Vertical, Lateral and Temporal Structure in Larval Distributions at Hydrothermal Vents
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Genomic, Transcriptomic, and Proteomic Insights Into Intracellular
Zhou et al. Microbiome (2021) 9:182 https://doi.org/10.1186/s40168-021-01099-6 RESEARCH Open Access Arms race in a cell: genomic, transcriptomic, and proteomic insights into intracellular phage–bacteria interplay in deep-sea snail holobionts Kun Zhou1,2, Ying Xu 2,3*, Rui Zhang4,5* and Pei-Yuan Qian1* Abstract Background: Deep-sea animals in hydrothermal vents often form endosymbioses with chemosynthetic bacteria. Endosymbionts serve essential biochemical and ecological functions, but the prokaryotic viruses (phages) that determine their fate are unknown. Results: We conducted metagenomic analysis of a deep-sea vent snail. We assembled four genome bins for Caudovirales phages that had developed dual endosymbiosis with sulphur-oxidising bacteria (SOB) and methane- oxidising bacteria (MOB). Clustered regularly interspaced short palindromic repeat (CRISPR) spacer mapping, genome comparison, and transcriptomic profiling revealed that phages Bin1, Bin2, and Bin4 infected SOB and MOB. The observation of prophages in the snail endosymbionts and expression of the phage integrase gene suggested the presence of lysogenic infection, and the expression of phage structural protein and lysozyme genes indicated active lytic infection. Furthermore, SOB and MOB appear to employ adaptive CRISPR–Cas systems to target phage DNA. Additional expressed defence systems, such as innate restriction–modification systems and dormancy- inducing toxin–antitoxin systems, may co-function and form multiple lines for anti-viral defence. To counter host defence, phages Bin1, Bin2, and Bin3 appear to have evolved anti-restriction mechanisms and expressed methyltransferase genes that potentially counterbalance host restriction activity. In addition, the high-level expression of the auxiliary metabolic genes narGH, which encode nitrate reductase subunits, may promote ATP production, thereby benefiting phage DNA packaging for replication. -
Reproduction of Gastropods from Vents on the East Pacific Rise and the Mid-Atlantic Ridge
JOBNAME: jsr 27#1 2008 PAGE: 1 OUTPUT: Friday March 14 03:55:15 2008 tsp/jsr/159953/27-1-19 View metadata, citation and similar papers at core.ac.uk brought to you by CORE Journal of Shellfish Research, Vol. 27, No. 1, 107–118, 2008. provided by Woods Hole Open Access Server REPRODUCTION OF GASTROPODS FROM VENTS ON THE EAST PACIFIC RISE AND THE MID-ATLANTIC RIDGE PAUL A. TYLER,1* SOPHIE PENDLEBURY,1 SUSAN W. MILLS,2 LAUREN MULLINEAUX,2 KEVIN J. ECKELBARGER,3 MARIA BAKER1 AND CRAIG M. YOUNG4 1National Oceanography Centre, Southampton, University of Southampton, Southampton SO14 3ZH, United Kingdom; 2Biology Department Woods Hole Oceanographic Institution, Woods Hole Massachusetts 02543; 3Darling Marine Center, University of Maine, 193 Clark’s Cove Road. Walpole, Maine 04573; 4Oregon Institute of Marine Biology, University of Oregon, Charleston, Oregon 97420 ABSTRACT The gametogenic biology is described for seven species of gastropod from hydrothermal vents in the East Pacific and from the Mid-Atlantic Ridge. Species of the limpet genus Lepetodrilus (Family Lepetodrilidae) had a maximum unfertilized oocyte size of <90 mm and there was no evidence of reproductive periodicity or spatial variation in reproductive pattern. Individuals showed early maturity with females undergoing gametogenesis at less than one third maximum body size. There was a power relationship between shell length and fecundity, with a maximum of ;1,800 oocytes being found in one individual, although individual fecundity was usually <1,000. Such an egg size might be indicative of planktotrophic larval development, but there was never any indication of shell growth in larvae from species in this genus. -
The Specific and Exclusive Microbiome of the Deep-Sea Bone-Eating Snail, Rubyspira Osteovora Heidi S
FEMS Microbiology Ecology, 93, 2017, fiw250 doi: 10.1093/femsec/fiw250 Advance Access Publication Date: 16 December 2016 Research Article RESEARCH ARTICLE The specific and exclusive microbiome of the deep-sea bone-eating snail, Rubyspira osteovora Heidi S. Aronson, Amanda J. Zellmer and Shana K. Goffredi∗ Department of Biology, Occidental College, Los Angeles, CA 90041, USA ∗Corresponding author: Department of Biology, Occidental College, 1600 Campus Rd, Los Angeles, CA 90041, USA. Tel: +323-259-1470; E-mail: [email protected] One sentence summary: Rubyspira osteovora is an unusual snail found only at whalefalls in the deep-sea, with a gut microbiome dominated by bacteria not present in the surrounding environment. Editor: Julie Olson ABSTRACT Rubyspira osteovora is an unusual deep-sea snail from Monterey Canyon, California. This group has only been found on decomposing whales and is thought to use bone as a novel source of nutrition. This study characterized the gut microbiome of R. osteovora, compared to the surrounding environment, as well as to other deep-sea snails with more typical diets. Analysis of 16S rRNA gene sequences revealed that R. osteovora digestive tissues host a much lower bacterial diversity (average Shannon index of 1.9; n = 12), compared to environmental samples (average Shannon index of 4.4; n = 2) and are dominated by two bacterial genera: Mycoplasma and Psychromonas (comprising up to 56% and 42% average total recovered sequences, respectively). These two bacteria, along with Psychrilyobacter sp. (∼16% average recovered sequences), accounted for between 43% and 92% of the total recovered sequences in individual snail digestive systems, with other OTUs present at much lower proportions. -
New Archaeogastropod Limpets from Hydrothermal Vents New Family Peltospiridae, New Superfamily Peltospiracea
Zoologica Scripta, Vol. 18, No. 1, pp. 49-66,1989 0300-3256/89 $3.00 +.00 Printed in Great Britain Pergamon Press pic 1989 The Norwegian Academy of Science and Letters New archaeogastropod limpets from hydrothermal vents new family Peltospiridae, new superfamily Peltospiracea JAMES H. MCLEAN Accepted 25 February 1988 McLean, J. H. 1989. New archaeogastropod limpets from hydrothermal vents: new family Peltospiridae, new superfamily Peltospiracea.—Zool. Scr. 18:49-66. Seven new species of limpets from hydrothermal vents are described in five new genera in the new family Peltospiridae (new superfamily Peltospiracea). Limpets in this family are known only from the hydrothermal vent community at two sites, near 21°N and 13°N, on the East Pacific Rise. New genera and species are: Peltospira, type species P. operculata from both sites, and P. delicata from 13°N; Nodopelta, type species N. heminoda from both sites, and N. subnoda from 13°N; Rhynchopelta, type species R. concentrica from both sites; Echinopelta, type species E. fistulosa from 21°N; Hirtopelta, type species H. hirta from 13°N. These limpets are associated with the Pompei worm Alvinella, except for Rhynchopelta, which is associated with the vestimentiferan worm Riftia. James H. McLean, Los Angeles County Museum of Natural History, 900 Exposition Blvd, Los Angeles, CA 90007, U.S.A. Introduction and coiled gastropods were illustrated by Turner & Lutz (1984), Turner et al. (1985) and Lutz et al. (1986), who The hydrothermal vent community of the East Pacific has also discussd the potential for larval dispersal in hydro- now been known for a decade, following the first dis thermal vent mollusks. -
The Heart of a Dragon: 3D Anatomical Reconstruction of the 'Scaly-Foot Gastropod'
The heart of a dragon: 3D anatomical reconstruction of the 'scaly-foot gastropod' (Mollusca: Gastropoda: Neomphalina) reveals its extraordinary circulatory system Chen, C., Copley, J. T., Linse, K., Rogers, A. D., & Sigwart, J. D. (2015). The heart of a dragon: 3D anatomical reconstruction of the 'scaly-foot gastropod' (Mollusca: Gastropoda: Neomphalina) reveals its extraordinary circulatory system. Frontiers in zoology, 12(13), [13]. https://doi.org/10.1186/s12983-015-0105-1 Published in: Frontiers in zoology Document Version: Publisher's PDF, also known as Version of record Queen's University Belfast - Research Portal: Link to publication record in Queen's University Belfast Research Portal Publisher rights © 2015 Chen et al. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. General rights Copyright for the publications made accessible via the Queen's University Belfast Research Portal is retained by the author(s) and / or other copyright owners and it is a condition of accessing these publications that users recognise and abide by the legal requirements associated with these rights. Take down policy The Research Portal is Queen's institutional repository that provides access to Queen's research output. Every effort has been made to ensure that content in the Research Portal does not infringe any person's rights, or applicable UK laws. -
A Molecular Phylogeny of the Patellogastropoda (Mollusca: Gastropoda)
^03 Marine Biology (2000) 137: 183-194 ® Spnnger-Verlag 2000 M. G. Harasevvych A. G. McArthur A molecular phylogeny of the Patellogastropoda (Mollusca: Gastropoda) Received: 5 February 1999 /Accepted: 16 May 2000 Abstract Phylogenetic analyses of partiaJ J8S rDNA formia" than between the Patellogastropoda and sequences from species representing all living families of Orthogastropoda. Partial 18S sequences support the the order Patellogastropoda, most other major gastro- inclusion of the family Neolepetopsidae within the su- pod groups (Cocculiniformia, Neritopsma, Vetigastro- perfamily Acmaeoidea, and refute its previously hy- poda, Caenogastropoda, Heterobranchia, but not pothesized position as sister group to the remaining Neomphalina), and two additional classes of the phylum living Patellogastropoda. This region of the Í8S rDNA Mollusca (Cephalopoda, Polyplacophora) confirm that gene diverges at widely differing rates, spanning an order Patellogastropoda comprises a robust clade with high of magnitude among patellogastropod lineages, and statistical support. The sequences are characterized by therefore does not provide meaningful resolution of the the presence of several insertions and deletions that are relationships among higher taxa of patellogastropods. unique to, and ubiquitous among, patellogastropods. Data from one or more genes that evolve more uni- However, this portion of the 18S gene is insufficiently formly and more rapidly than the ISSrDNA gene informative to provide robust support for the mono- (possibly one or more -
University of Southampton Research Repository Eprints Soton
University of Southampton Research Repository ePrints Soton Copyright © and Moral Rights for this thesis are retained by the author and/or other copyright owners. A copy can be downloaded for personal non-commercial research or study, without prior permission or charge. This thesis cannot be reproduced or quoted extensively from without first obtaining permission in writing from the copyright holder/s. The content must not be changed in any way or sold commercially in any format or medium without the formal permission of the copyright holders. When referring to this work, full bibliographic details including the author, title, awarding institution and date of the thesis must be given e.g. AUTHOR (year of submission) "Full thesis title", University of Southampton, name of the University School or Department, PhD Thesis, pagination http://eprints.soton.ac.uk UNIVERSITY OF SOUTHAMPTON FACULTY OF NATURAL AND ENVIRONMENTAL SCIENCES Ocean and Earth Science Volume 1 of 1 Life-history biology and biogeography of invertebrates in deep-sea chemosynthetic environments by Verity Nye Thesis for the degree of Doctor of Philosophy December 2013 UNIVERSITY OF SOUTHAMPTON ABSTRACT FACULTY OF NATURAL AND ENVIRONMENTAL SCIENCES Ocean and Earth Science Thesis for the degree of Doctor of Philosophy LIFE-HISTORY BIOLOGY AND BIOGEOGRAPHY OF INVERTEBRATES IN DEEP-SEA CHEMOSYNTHETIC ENVIRONMENTS Verity Nye Globally-distributed, insular and ephemeral deep-sea hydrothermal vents with their endemic faunas provide ‘natural laboratories’ for studying the processes that shape global patterns of marine life. The continuing discovery of hydrothermal vents and their faunal assemblages has yielded hundreds of new species and revealed several biogeographic provinces, distinguished by differences in the taxonomic composition of their assemblages. -
FAU Institutional Repository
FAU Institutional Repository http://purl.fcla.edu/fau/fauir This paper was submitted by the faculty of FAU’s Harbor Branch Oceanographic Institute. Notice: © 1999 Marine Biological Association of the United Kingdom. This manuscript is an author version with the final publication available and may be cited as: Tyler, P.A., & Young, C. M. (1999). Reproduction and dispersal at vents and cold seeps. Journal of the Marine Biological Association of the United Kingdom, 79(2), 193-208. J. Mar. Biol. Ass. U.K. (1999), 79,193^208 Printed in the United Kingdom REVIEW Reproduction and dispersal at vents and cold seeps P.A. Tyler* and C.M. YoungO *School of Ocean and Earth Science, University of Southampton, SOC, Southampton, SO14 3ZH. ODivision of Marine Science, Harbor Branch Oceanographic Institution, 5600 US 1 N, Fort Pierce, FL 34946, USA Reproductive cycles are determined from samples taken at regular intervals over a period of time related to the assumed periodicity of the breeding cycle. Fiscal, ship time and sampling constraints have made this almost impossible at deep-sea vents and seeps, but there is an accumulating mass of data that cast light on these processes. It is becoming apparent that most reproductive processes are phylogeneti- cally conservative, even in extreme vent and seep habitats. Reproductive patterns of species occurring at vents and seeps are not dissimilar to those of species from the same phyla found in non-chemosynthetic environments. The demographic structure of most vent and seep animals is undescribed and the maximum ages and growth rates are not known. We know little about how the gametogenic cycle is initiated, though there is a growing body of data on the size at ¢rst reproduction. -
Abigail Jean Fusaro
SPATIAL AND TEMPORAL POPULATION GENETICS AT DEEP-SEA HYDROTHERMAL VENTS ALONG THE EAST PACIFIC RISE AND GALÁPAGOS RIFT by Abigail Jean Fusaro B.S., University of Rhode Island, 2002 Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy at the MASSACHUSETTS INSTITUTE OF TECHNOLOGY and the WOODS HOLE OCEANOGRAPHIC INSTITUTION September 2008 © 2008 Abigail J. Fusaro All rights reserved. The author hereby grants to MIT and WHOI permission to reproduce and distribute publicly paper and electronic copies of this thesis document in whole or in part in any medium now known or hereafter created. Signature of Author Joint Program in Oceanography/Applied Ocean Science and Engineering Massachusetts Institute of Technology and Woods Hole Oceanographic Institution July 7, 2008 Certified by Timothy M. Shank Thesis Supervisor Accepted by Edward F. DeLong Chair, Joint Committee for Biological Oceanography Massachusetts Institute of Technology and Woods Hole Oceanographic Institution 2 Spatial and Temporal Population Genetics at Deep-Sea Hydrothermal Vents Along the East Pacific Rise and Galápagos Rift by Abigail Jean Fusaro Submitted to the Department of Biology on July 7, 2008, in partial fulfillment of the requirements for the degree of Doctor of Philosophy Abstract Ecological processes at deep-sea hydrothermal vents on fast-spreading mid-ocean ridges are punctuated by frequent physical disturbance. Larval dispersal among disjunct vent sites facilitates the persistence of sessile invertebrate species in these geologically and chemically dynamic habitats despite local extinction events. Regional population extension and rapid recolonization by the siboglinid tubeworm Riftia pachyptila have been well documented along the East Pacific Rise and the Galápagos Rift. -
Neolepetopsidae, a New Docoglossate Limpet Family from Hydrothermal Vents and Its Relevance to Patellogastropod Evolution
J. ZooL, Lond. (1990) 222, 485-528 Neolepetopsidae, a new docoglossate limpet family from hydrothermal vents and its relevance to patellogastropod evolution JAMES H. MCLEAN Los Angeles County Museum of Natural History, Los Angeles, California 90007, USA {Accepted 21 May 1989) (With 12 plates and 1 figure in the text) Six new species of limpets from hydrothermal vents at spreading centres, hydrothermal vents on seamounts, or cold sulphide seeps are described in three new genera in the new family Neolepetopsidae. Anatomy is detailed separately by V. Fretter (1990). The family is considered to be a living descendant of the Palaeozoic-Mesozoic family Lepetopsidae (proposed herein), based on Lepetopsis Whitfield, 1882. Both families are placed in the new superfamily Lepetopsacea, new suborder Lepetopsina, order Patellogastropoda. New genera and species are: Neolepetopsis, type species N. gordensis, from the Gorda Ridge, and three additional species: N. densata, from an active sulphide chimney near 12° N on the East Pacific Rise, N. verruca from a sulphide chimney near 21 ° N on the East Pacific Rise, and N. occulta from hydrothermal vents on the caldera floor of Green Seamount near 21° N; Eulepetopsis, type species E. vitrea, from hydrothermal vents at the Galapagos Rift and the East Pacific Rise near 21°, 13° and 11° N; Paralepetopsis, type species P. floridensis, from cool, hypersaline, sulphide seeps at the base of the continental slope off the west coast of Florida. Inclusion in Patellogastropoda is indicated by plesiomorphic characters: symmetrical shell lacking coiled phase, no epipodium in adult, single dorsally arched jaw, docoglossate dentition with a licker below the tip of the radula, both left and right kidney, and gonad discharging through right kidney. -
Symmetromphalus Hageni Sp. N., a New Neomphalid Gastropod
ZOBODAT - www.zobodat.at Zoologisch-Botanische Datenbank/Zoological-Botanical Database Digitale Literatur/Digital Literature Zeitschrift/Journal: Annalen des Naturhistorischen Museums in Wien Jahr/Year: 1992 Band/Volume: 93B Autor(en)/Author(s): Beck Lothar A. Artikel/Article: Symmetromphalus hageni sp.n., a new neomphalid gastropod (Prosobranchia: Neomphalidae) from hydrothermal vents at the Manus Back- Arc Basin (Bismarck Sea, Papua New Guinea). 243-257 ©Naturhistorisches Museum Wien, download unter www.biologiezentrum.at Ann. Naturhist. Mus. Wien 93 B 243-257 Wien, 30. August 1992 Symmetromphalus hageni sp. n., a new neomphalid gastropod (Prosobranchia: Neomphalidae) from hydrothermal vents at the Manus Back-Arc Basin (Bismarck Sea, Papua New Guinea) By LOTHAR A. BECK1) (With 3 Tables, 6 Figures and 6 Plates) Manuscript submitted November 4th, 1991 Zusammenfassung Eine neue Gastropoden-Art von hydrothermalen Quellen (aktiven Sulfid-Schornsteinen) in der Spreizungszone des Manus Beckens (Bismarck See, Papua Neuguinea) wird beschrieben. Die neue Form hat eine fast symmetrische, napfförmige, flache Schale mit unregelmäßigem Rand. Reste des postembryonalen Gewindes sind adult nur noch selten in Form eines sehr kleinen Schlitzes im Inneren der Schale vorhanden. Die Oberfläche des Protoconchs zeigt eine netzförmige Struktur und einen glatten Bereich an der Mündung. Am Weichkörper fallen der verlängerte, augenlose Kopf- und Nackenbereich, der zu einem komplizierten Penis umgeformte linke Kopftentakel der Männchen, die stark vergrößerte Kieme sowie an der Radula nach distal größer werdende Lateralzähne und der fehlende 5. Lateralzahn auf. Die morphologischen Merkmale sprechen für eine mehr oder weniger festsitzende, filtrierende Lebensweise. Der neue Gastropode wird mit den bisher bekannten Neomphaliden-Arten Symmetrom- phalus regularis MCLEAN, 1990, Neomphalus fretterae MCLEAN, 1981, Cyathermia naticoides WAREN & BOUCHET, 1989 und Lacunoides exquisitus WAREN & BOUCHET, 1989 verglichen. -
Gastropoda: Prosobranchia: Neritacea: Phenacolepadidae
ZOBODAT - www.zobodat.at Zoologisch-Botanische Datenbank/Zoological-Botanical Database Digitale Literatur/Digital Literature Zeitschrift/Journal: Annalen des Naturhistorischen Museums in Wien Jahr/Year: 1992 Band/Volume: 93B Autor(en)/Author(s): Beck Lothar A. Artikel/Article: Two new neritacean limpets (Gastropoda: Prosobranchia: Neritacea: Phenacolepadidae) from active hydrothermal vents at Hydrothermal Field 1 "Wienerwald" in the Manus Back-Arc Basin (Bismarck Sea, Papua-New Guinea). 259-275 ©Naturhistorisches Museum Wien, download unter www.biologiezentrum.at Ann. Naturhist. Mus. Wien 93 B 259-275 Wien, 30. August 1992 Two new neritacean limpets (Gastropoda: Prosobranchia: Neritacea: Phenacolepadidae) from active hydrothermal vents at Hydrothermal Field 1 "Wienerwald" in the Manus Back-Arc Basin (Bismarck Sea, Papua-New Guinea) By LOTHAR A. BECK1) (With 3 Tables, 5 Figures and 7 Plates) Manuscript submitted January 19th, 1992 Zusammenfassung Zwei neue Gastropodenarten werden von hydrothermalen Quellen am Spreizungsrücken im Manus Back-Arc Basin (Bismarck-See, Papua-Neuguinea) beschrieben und die Morphologie ihrer Schale, des Weichkörpers und der Radula verglichen mit Shinkailepas kaikatensis OKUTANI & al., 1989 und der Gattung Phenacolepas. Beide neue Arten stimmen in folgenden Merkmalen mit Phenacolepas überein: Die Schalenform und -Skulptur ist sehr ähnlich; die Calcitschicht der Schale fehlt; das Schalenwachstum ändert sich abrupt vom gewundenen Protoconch zur napfförmigen Schale; die cuticularisierten Seitenbereiche der Fußsohle sind ableitbar von Randflächen der Fußsohle von Phenacolepas; die Fortpflanzungsorgane sind sehr ähnlich: bei Männchen ist der rechte Kopflappen zu einem Penis umgeformt, bei Weibchen sind u. a. ein Gonoporus und eine Vaginal-Öffnung mit anschließender Spermatophorentasche zu finden. Die Variabilität der Radulamerkmale innerhalb der Gattung Phenacolepas umfaßt auch die beiden neuen Arten.