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ICTV Code Assigned: 2011.001Ag Officers)
This form should be used for all taxonomic proposals. Please complete all those modules that are applicable (and then delete the unwanted sections). For guidance, see the notes written in blue and the separate document “Help with completing a taxonomic proposal” Please try to keep related proposals within a single document; you can copy the modules to create more than one genus within a new family, for example. MODULE 1: TITLE, AUTHORS, etc (to be completed by ICTV Code assigned: 2011.001aG officers) Short title: Change existing virus species names to non-Latinized binomials (e.g. 6 new species in the genus Zetavirus) Modules attached 1 2 3 4 5 (modules 1 and 9 are required) 6 7 8 9 Author(s) with e-mail address(es) of the proposer: Van Regenmortel Marc, [email protected] Burke Donald, [email protected] Calisher Charles, [email protected] Dietzgen Ralf, [email protected] Fauquet Claude, [email protected] Ghabrial Said, [email protected] Jahrling Peter, [email protected] Johnson Karl, [email protected] Holbrook Michael, [email protected] Horzinek Marian, [email protected] Keil Guenther, [email protected] Kuhn Jens, [email protected] Mahy Brian, [email protected] Martelli Giovanni, [email protected] Pringle Craig, [email protected] Rybicki Ed, [email protected] Skern Tim, [email protected] Tesh Robert, [email protected] Wahl-Jensen Victoria, [email protected] Walker Peter, [email protected] Weaver Scott, [email protected] List the ICTV study group(s) that have seen this proposal: A list of study groups and contacts is provided at http://www.ictvonline.org/subcommittees.asp . -
High Variety of Known and New RNA and DNA Viruses of Diverse Origins in Untreated Sewage
Edinburgh Research Explorer High variety of known and new RNA and DNA viruses of diverse origins in untreated sewage Citation for published version: Ng, TF, Marine, R, Wang, C, Simmonds, P, Kapusinszky, B, Bodhidatta, L, Oderinde, BS, Wommack, KE & Delwart, E 2012, 'High variety of known and new RNA and DNA viruses of diverse origins in untreated sewage', Journal of Virology, vol. 86, no. 22, pp. 12161-12175. https://doi.org/10.1128/jvi.00869-12 Digital Object Identifier (DOI): 10.1128/jvi.00869-12 Link: Link to publication record in Edinburgh Research Explorer Document Version: Publisher's PDF, also known as Version of record Published In: Journal of Virology Publisher Rights Statement: Copyright © 2012, American Society for Microbiology. All Rights Reserved. General rights Copyright for the publications made accessible via the Edinburgh Research Explorer is retained by the author(s) and / or other copyright owners and it is a condition of accessing these publications that users recognise and abide by the legal requirements associated with these rights. Take down policy The University of Edinburgh has made every reasonable effort to ensure that Edinburgh Research Explorer content complies with UK legislation. If you believe that the public display of this file breaches copyright please contact [email protected] providing details, and we will remove access to the work immediately and investigate your claim. Download date: 09. Oct. 2021 High Variety of Known and New RNA and DNA Viruses of Diverse Origins in Untreated Sewage Terry Fei Fan Ng,a,b Rachel Marine,c Chunlin Wang,d Peter Simmonds,e Beatrix Kapusinszky,a,b Ladaporn Bodhidatta,f Bamidele Soji Oderinde,g K. -
Suivi De La Thèse
UNIVERSITE OUAGA I UNIVERSITÉ DE LA PR JOSEPH KI-ZERBO RÉUNION ---------- ---------- Unité de Formation et de Recherche Faculté des Sciences et Sciences de la Vie et de la Terre Technologies UMR Peuplements Végétaux et Bio-agresseurs en Milieu Tropical CIRAD – Université de La Réunion INERA – LMI Patho-Bios THÈSE EN COTUTELLE Pour obtenir le diplôme de Doctorat en Sciences Epidémiologie moléculaire des géminivirus responsables de maladies émergentes sur les cultures maraîchères au Burkina Faso par Alassane Ouattara Soutenance le 14 Décembre 2017, devant le jury composé de Stéphane POUSSIER Professeur, Université de La Réunion Président Justin PITA Professeur, Université Houphouët-Boigny, Côte d'Ivoire Rapporteur Philippe ROUMAGNAC Chercheur HDR, CIRAD, UMR BGPI, France Rapporteur Fidèle TIENDREBEOGO Chercheur, INERA, Burkina Faso Examinateur Nathalie BECKER Maître de conférences HDR MNHN, UMR ISYEB, France Examinatrice Jean-Michel LETT Chercheur HDR, CIRAD, UMR PVBMT, La Réunion Co-Directeur de thèse Nicolas BARRO Professeur, Université Ouagadougou, Burkina Faso Co-Directeur de thèse DEDICACES A mon épouse Dadjata et à mon fils Jaad Kaamil: merci pour l’amour, les encouragements et la compréhension tout au long de ces trois années. A mon père Kassoum, à ma mère Salimata, à ma belle-mère Bila, à mon oncle Soumaïla et son épouse Abibata : merci pour votre amour, j’ai toujours reçu soutien, encouragements et bénédictions de votre part. Puisse Dieu vous garder en bonne santé ! REMERCIEMENTS Mes remerciements vont à l’endroit du personnel des Universités Ouaga I Pr Joseph KI- ZERBO et de La Réunion pour avoir accepté mon inscription. Je remercie les différents financeurs de mes travaux : l’AIRD (Projet PEERS-EMEB), l’Union Européenne (ERDF), le Conseil Régional de La Réunion et le Cirad (Bourse Cirad-Sud). -
Next Generation Sequencing for Studying Viruses and RNA Silencing-Based Antiviral Defense in Crop Plants
Next Generation Sequencing for studying viruses and RNA silencing-based antiviral defense in crop plants Inauguraldissertation zur Erlangung der Würde eines Doktors der Philosophie vorgelegt der Philosophisch-Naturwissenschaftlichen Fakultät der Universität Basel von Jonathan Seguin von Frankreich Basel, 2016 Originaldokument gespeichert auf dem Dokumentenserver der Universität Basel edoc.unibas.ch Genehmigt von der Philosophisch-Naturwissenschaftlichen Fakultät auf Antrag von Prof. Thomas Boller, PD Dr. Mikhail M. Pooggin und Prof. Mihaela Zavolan. Basel, 9 dezember 2014 Prof. Dr. Jörg Schibler General Preface Financial support of this PhD work was provided by the COST action 'Food and Agriculture' (FA) 0806, which has for final objective to create a RNA-based vaccine to immunize crop plants against viral infection. This work was done within a collaboration between the Fasteris SA company, directed by Dr. Laurent Farinelli, and the team of Dr. Mikhail Pooggin from the Plant Physiology research group in Botany at the University of Basel. The expertise of Dr. Laurent Farinelli's company was requested in the objective to use Illumina-Solexa technology to sequence small RNA and perform bioinformatic analysis. The expertise of Dr. Mikhail Pooggin was requested in order to study the defense mechanisms based on sRNA within plant infected by Geminiviruses, Pararetroviruses and Tobamoviruses. Consequently, this work as part of the action FA0806 involved several different other collaborations with COST member european scientists. Acknowledgments I would like to thanks and prove my gratitude to all people who help me during my whole doctoral study and who make this thesis possible. First, I would like to thank my supervisors, PD Dr. -
Evidence to Support Safe Return to Clinical Practice by Oral Health Professionals in Canada During the COVID-19 Pandemic: a Repo
Evidence to support safe return to clinical practice by oral health professionals in Canada during the COVID-19 pandemic: A report prepared for the Office of the Chief Dental Officer of Canada. November 2020 update This evidence synthesis was prepared for the Office of the Chief Dental Officer, based on a comprehensive review under contract by the following: Paul Allison, Faculty of Dentistry, McGill University Raphael Freitas de Souza, Faculty of Dentistry, McGill University Lilian Aboud, Faculty of Dentistry, McGill University Martin Morris, Library, McGill University November 30th, 2020 1 Contents Page Introduction 3 Project goal and specific objectives 3 Methods used to identify and include relevant literature 4 Report structure 5 Summary of update report 5 Report results a) Which patients are at greater risk of the consequences of COVID-19 and so 7 consideration should be given to delaying elective in-person oral health care? b) What are the signs and symptoms of COVID-19 that oral health professionals 9 should screen for prior to providing in-person health care? c) What evidence exists to support patient scheduling, waiting and other non- treatment management measures for in-person oral health care? 10 d) What evidence exists to support the use of various forms of personal protective equipment (PPE) while providing in-person oral health care? 13 e) What evidence exists to support the decontamination and re-use of PPE? 15 f) What evidence exists concerning the provision of aerosol-generating 16 procedures (AGP) as part of in-person -
The Origin and Evolution of Geminivirus-Related DNA Sequences in Nicotiana
Heredity (2004) 92, 352–358 & 2004 Nature Publishing Group All rights reserved 0018-067X/04 $25.00 www.nature.com/hdy The origin and evolution of geminivirus-related DNA sequences in Nicotiana L Murad1, JP Bielawski2, R Matyasek1,3, A Kovarı´k3, RA Nichols1, AR Leitch1 and CP Lichtenstein1 1School of Biological Sciences, Queen Mary University of London, London E1 4NS, UK; 2Department of Biology, University College London, Gower Street, London, UK; 3Institute of Biophysics, Academy of Sciences of the Czech Republic, Kra´lovopolska´ 135, 612 65 Brno, Czech Republic A horizontal transmission of a geminiviral DNA sequence, and found none within the GRD3 and GRD5 families. into the germ line of an ancestral Nicotiana, gave rise to However, the substitutions between GRD3 and GRD5 do multiple repeats of geminivirus-related DNA, GRD, in the show a significant excess of synonymous changes, suggest- genome. We follow GRD evolution in Nicotiana tabacum ing purifying selection and hence a period of autonomous (tobacco), an allotetraploid, and its diploid relatives, and evolution between GRD3 and GRD5 integration. We observe show GRDs are derived from begomoviruses. GRDs in the GRD3 family, features of Helitrons, a major new class occur in two families: the GRD5 family’s ancestor integrated of putative rolling-circle replicating eukaryotic transposon, into the common ancestor of three diploid species, not found in the GRD5 family or geminiviruses. We speculate Nicotiana kawakamii, Nicotiana tomentosa and Nicotiana that the second integration event, resulting in the GRD3 tomentosiformis, on homeologous group 4 chromosomes. family, involved a free-living geminivirus, a Helitron and The GRD3 family was acquired more recently on chromo- perhaps also GRD5. -
A Family of Viruses Geminiviridae and Analysis of Phytosanitary Risk in Ukraine A
UDC 578.4/632.93 © 2016 A family of viruses Geminiviridae and analysis of phytosanitary risk in Ukraine A. Kyrychenko, Candidate of Biological Sciences Institute of Microbiology and Virology. DK Zabolotny National Academy of Sciences of Ukraine The purpose. To study of the basic biological properties of viruses of family Geminiviridae – the important virus pathogens of food and ornamental crops in the majority of the countries of the world. Analysis of correlation between risk of the contagions caused by viruses of this family, change of climatic conditions and ecology of a transmitting agent. Methods. Monographic, economic-statistical, theoretical generalization. Results. Biological features of viruses of family Geminiviridae and their transmitting agents are presented. Analysis of epidemiological situation concerning viruses Geminiviridae in Ukraine in view of probability and possible after-effects of introduction of viruses and their transmitting agents in agro-ecosystems is made. Conclusions. To one of means of prevention virus epiphytoties should become analysis of phytosanitory risk with the purpose of scientific and engineering justification of phytosanitory provisions which are applied concerning hazardous organisms or the imported goods. Key words: viruses of plants, Geminiviridae, tobacco whitefly Bemisia tabaci, climate, phytosanitory supervisory control. The viruses of Geminiviridae family cause many economically important virus diseases of crops worldwide, limiting the vegetable production in tropical, subtropical and temperate -
University of Florida Thesis Or Dissertation Formatting
BIOPHYSICAL CHARACTERIZATION OF THE ASSEMBLY AND DISASSEMBLY OF THE ssDNA VIRUSES By ANTONETTE DENISE BENNETT A DISSERTATION PRESENTED TO THE GRADUATE SCHOOL OF THE UNIVERSITY OF FLORIDA IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY UNIVERSITY OF FLORIDA 2009 1 © 2009 Antonette D Bennett 2 To my mother Iris Barrett-Browne, my brother Matthew Browne, my sister Shema Barrett, nephew Luke Walters and my son John-Claude Hutchinson 3 ACKNOWLEDGMENTS I am indebted to Professor Mavis McKenna for her mentorship, her patience and for allowing me the opportunity to work with her, as well as, in her lab for the last 5 years. Her commitment to excellence in all aspects of science has inspired and motivated me. I would also like to thank Dr Nicholas Muzyczka for his Co-chairing of my committee as well as allowing me to work in his lab for part of this study and his co-mentorship is greatly appreciated. I would also like to thank the members of my supervisory committee, Dr. Michael Bubb, Dr. J. Bert Flannegan, and Dr Jane Polston. They have been helpful and supportive in the work that I am presenting. I would like to thank the members of the McKenna lab and the Muuzyczka lab (past and present) for their assistance, friendship and their kindness. I would also like to show my appreciation of the Biochemistry staff and the IDP recruiting and clerical staff, without whom I could not have completed this work. I want to thank my parents Iris and Eric Browne, my brother Mathew Browne, my sister Shema Barrett, cousins, my aunts, my uncles, and my son John-Claude Hutchinson. -
Virus Discovery in All Three Major Lineages of Terrestrial Arthropods Highlights the Diversity of Single-Stranded DNA Viruses Associated with Invertebrates
Virus discovery in all three major lineages of terrestrial arthropods highlights the diversity of single-stranded DNA viruses associated with invertebrates Karyna Rosario1, Kaitlin A. Mettel1, Bayleigh E. Benner1, Ryan Johnson1, Catherine Scott2, Sohath Z. Yusseff-Vanegas3, Christopher C.M. Baker4,5, Deby L. Cassill6, Caroline Storer7, Arvind Varsani8,9 and Mya Breitbart1 1 College of Marine Science, University of South Florida, Saint Petersburg, FL, USA 2 Department of Biological Sciences, University of Toronto, Scarborough, Scarborough, ON, Canada 3 Department of Biology, University of Vermont, Burlington, VT, USA 4 Department of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ, USA 5 Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA, USA 6 Department of Biological Sciences, University of South Florida Saint Petersburg, Saint Petersburg, FL, USA 7 School of Forest Resources and Conservation, University of Florida, Gainesville, FL, USA 8 The Biodesign Center for Fundamental and Applied Microbiomics, School of Life Sciences, Center for Evolution and Medicine, Arizona State University, Tempe, AZ, USA 9 Structural Biology Research Unit, Department of Clinical Laboratory Sciences, University of Cape Town, Cape Town, South Africa ABSTRACT Viruses encoding a replication-associated protein (Rep) within a covalently closed, single-stranded (ss)DNA genome are among the smallest viruses known to infect eukaryotic organisms, including economically valuable agricultural crops and livestock. -
Plant Viruses Infecting Solanaceae Family Members in the Cultivated and Wild Environments: a Review
plants Review Plant Viruses Infecting Solanaceae Family Members in the Cultivated and Wild Environments: A Review Richard Hanˇcinský 1, Daniel Mihálik 1,2,3, Michaela Mrkvová 1, Thierry Candresse 4 and Miroslav Glasa 1,5,* 1 Faculty of Natural Sciences, University of Ss. Cyril and Methodius, Nám. J. Herdu 2, 91701 Trnava, Slovakia; [email protected] (R.H.); [email protected] (D.M.); [email protected] (M.M.) 2 Institute of High Mountain Biology, University of Žilina, Univerzitná 8215/1, 01026 Žilina, Slovakia 3 National Agricultural and Food Centre, Research Institute of Plant Production, Bratislavská cesta 122, 92168 Piešt’any, Slovakia 4 INRAE, University Bordeaux, UMR BFP, 33140 Villenave d’Ornon, France; [email protected] 5 Biomedical Research Center of the Slovak Academy of Sciences, Institute of Virology, Dúbravská cesta 9, 84505 Bratislava, Slovakia * Correspondence: [email protected]; Tel.: +421-2-5930-2447 Received: 16 April 2020; Accepted: 22 May 2020; Published: 25 May 2020 Abstract: Plant viruses infecting crop species are causing long-lasting economic losses and are endangering food security worldwide. Ongoing events, such as climate change, changes in agricultural practices, globalization of markets or changes in plant virus vector populations, are affecting plant virus life cycles. Because farmer’s fields are part of the larger environment, the role of wild plant species in plant virus life cycles can provide information about underlying processes during virus transmission and spread. This review focuses on the Solanaceae family, which contains thousands of species growing all around the world, including crop species, wild flora and model plants for genetic research. -
Zoonotic Diseases July 02-04, 2018 | Vienna, Austria
conferenceseries.com JOINT EVENT 10th International Virology Summit & 4th International Conference on Influenza & Zoonotic Diseases July 02-04, 2018 | Vienna, Austria Scientific Tracks & Abstracts Day 1 Euro Virology 2018 & Influenza 2018 Page 47 Session-1 Day 1 July 02, 2018 Human Virology and Hepatitis|HIV, AIDS and other Emerging Viruses |Molecular Virology Medical Virology |Plant Virology | Current Focus in Virology Research | Viral Oncology Current and Novel Approach for Influenza vaccines | Influenza Vaccines and Vaccination Pathogenesis of Influenza Virus | Influenza Viruses -Advance in Detection & Differentiation Session Chair Session Co-Chair Joseph C. Glorioso Alfredo Berzal-Herranz University of Pittsburgh, USA Institute of Parasitology and Biomedicine, Spain Session Introduction Title: Role of Herpesviruses dUTPases in the immune dysregulation associated with Myalgic Encephalomyelitis/Chronic Fatigue Syndrome and Gulf war illness Maria Eugenia Ariza, The Ohio State University, USA Title: Generation of monoclonal antibodies against foot-and-mouth disease virus SAT 2 and development of lateral flow strip test for virus detection Ming Yang, Canadian Food Inspection Agency, Canada Title: Proteins candidates for complementary diagnosis of goats naturally infected by Lentivirus Angela Maria Xavier Eloy, Brazilian Agricultural Research Corporation, Brazil Title: Protein binders mimicking surface glycoprotein epitopes recognized by broadly neutralizing antibodies as a new platform for identification of peptide-prints as tools for -
Evolutionary Dynamics of Begomovirus Populations: Variability in Cultivated and Non-Cultivated Hosts and Their Quasispecies Nature
ALISON TALIS MARTINS LIMA EVOLUTIONARY DYNAMICS OF BEGOMOVIRUS POPULATIONS: VARIABILITY IN CULTIVATED AND NON-CULTIVATED HOSTS AND THEIR QUASISPECIES NATURE Tese apresentada à Universidade Federal de Viçosa, como parte das exigências do Programa de Pós- Graduação em Fitopatologia, para obtenção do título de Doctor Scientiae VIÇOSA MINAS GERAIS – BRASIL 2012 Ficha catalográfica preparada pela Seção de Catalogação e Classificação da Biblioteca Central da UFV T Lima, Alison Talis Martins, 1982- L732e Evolutionary dynamics of begomovirus populations : 2012 variability in cultivated and non-cultivated hosts and their quasispecies nature / Alison Talis Martins Lima. – Viçosa, MG, 2012. ix, 182f. : il. ; (algumas col.) ; 29cm. Inclui apêndices. Orientador: Francisco Murilo Zerbini Júnior Tese (doutorado) - Universidade Federal de Viçosa. Inclui bibliografia. 1. Begomovírus. 2. Geminivírus. 3. Mutação (Biologia). 4. Recombinação (Genética). 5. Evolução (Biologia). I. Universidade Federal de Viçosa. Departamento de Fitopatologia. Programa de Pós-Graduação em Fitopatologia. II. Título. CDD 22. ed. 571.9928 ALISON TALIS MARTINS LIMA EVOLUTIONARY DYNAMICS OF BEGOMOVIRUS POPULATIONS: VARIABILITY IN CULTIVATED AND NON-CULTIVATED HOSTS AND THEIR QUASISPECIES NATURE Tese apresentada à Universidade Federal de Viçosa, como parte das exigências do Programa de Pós- Graduação em Fitopatologia, para obtenção do título de Doctor Scientiae APROVADA: 28 de Agosto de 2012 Prof. Siobain Marie Deirdre Duffy Prof. Karla Suemy Clemente Yotoko Prof. Marisa Vieira de