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Persoonia 29, 2012: 146–201 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE http://dx.doi.org/10.3767/003158512X661589 Fungal Planet description sheets: 128–153 P.W. Crous1, R.G. Shivas2, M.J. Wingfield3, B.A. Summerell4, A.Y. Rossman5, J.L. Alves6, G.C. Adams7, R.W. Barreto6, A. Bell8, M.L. Coutinho9, S.L. Flory10, G. Gates11, K.R. Grice12, G.E.St.J. Hardy13, N.M. Kleczewski14, L. Lombard1, C.M.O. Longa15, G. Louis-Seize16, F. Macedo9, D.P. Mahoney8, G. Maresi17, P.M. Martin-Sanchez18, L. Marvanová19, A.M. Minnis20, L.N. Morgado21, M.E. Noordeloos21, A.J.L. Phillips22, W. Quaedvlieg1, P.G. Ryan23, C. Saiz-Jimenez18, K.A. Seifert16, W.J. Swart24, Y.P. Tan2, J.B. Tanney16, P.Q. Thu25, S.I.R. Videira1, D.M. Walker26, J.Z. Groenewald1 Key words Abstract Novel species of microfungi described in the present study include the following from Australia: Catenulo­ stroma corymbiae from Corymbia, Devriesia stirlingiae from Stirlingia, Penidiella carpentariae from Carpentaria, ITS DNA barcodes Phaeococcomyces eucalypti from Eucalyptus, Phialophora livistonae from Livistona, Phyllosticta aristolochiicola LSU from Aristolochia, Clitopilus austroprunulus on sclerophyll forest litter of Eucalyptus regnans and Toxicocladosporium novel fungal species posoqueriae from Posoqueria. Several species are also described from South Africa, namely: Ceramothyrium podo­ systematics carpi from Podocarpus, Cercospora chrysanthemoides from Chrysanthemoides, Devriesia shakazului from Aloe, Penidiella drakensbergensis from Protea, Strelitziana cliviae from Clivia and Zasmidium syzygii from Syzygium. Other species include Bipolaris microstegii from Microstegium and Synchaetomella acerina from Acer (USA), Brun­ neiapiospora austropalmicola from Rhopalostylis (New Zealand), Calonectria pentaseptata from Eucalyptus and Macadamia (Vietnam), Ceramothyrium melastoma from Melastoma (Indonesia), Collembolispora aristata from stream foam (Czech Republic), Devriesia imbrexigena from glazed decorative tiles (Portugal), Microcyclospora rhoicola from Rhus (Canada), Seiridium phylicae from Phylica (Tristan de Cunha, Inaccessible Island), Passalora lobeliae­ fistulosis from Lobelia (Brazil) and Zymoseptoria verkleyi from Poa (The Netherlands). Valsalnicola represents a new ascomycete genus from Alnus (Austria) and Parapenidiella a new hyphomycete genus from Eucalyptus (Australia). Morphological and culture characteristics along with ITS DNA barcodes are also provided. Article info Received: 1 October 2012; Accepted: 26 October 2012; Published: 20 December 2012. Acknowledgements We thank the technical staff, A. van Iperen (cultures), 150). The South African National Antarctic Programme is thanked for logistic M. Vermaas (photographic plates), and M. Starink-Willemse (DNA isolation, support and Tristan da Cunha’s Conservation Department for permission to amplification and sequencing) for their invaluable assistance. Sincere thanks collect samples (FP 147). Fundação para a Ciência e a Tecnologia, Portugal to Dr Barry Sneddon and Dr Patrick Brownsey for their help in confirming is thanked for grant SFRH/BD/46038/2008 (M. Couthinho) and PEst-OE/ the host substrate (FP 130), and to Kerie McCombe and Andrew Millar for BIA/UI0457/2011 (A.J.L. Phillips). The contribution of L. Marvanová is part some of the photographs used. Kathie Hodge, Rebecca Bennett and D.H. of the project MSM 0021622416 of the Ministry of Education, Youth and DeFoe are thanked for collecting some of the specimens studied here (FP Sports, Czech Republic. 1 CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, 15 FEM-IASMA – Research and Innovation Centre, Sustainable Agro- The Netherlands; corresponding author e-mail: [email protected]. Ecosystems and Bioresources Department. Via E. Mach 1, 38010 San 2 Biosecurity Queensland, Ecosciences Precinct, Level 2C East, GPO Box Michele all’Adige (TN), Italy. 267, Brisbane 4001, Queensland, Australia. 16 Biodiversity (Mycology & Botany), Agriculture & Agri-Food Canada, 960 3 Forestry and Agricultural Biotechnology Institute, University of Pretoria, Carling Ave., Ottawa, Ontario K1A 0C6, Canada. South Africa. 17 IASMA - Centre for Technology Transfer, Via E. Mach 1, 38010 San 4 Royal Botanic Gardens and Domain Trust, Mrs. Macquaries Road, Syd- Michele all’Adige (TN), Italy. ney, NSW 2000, Australia. 18 Instituto de Recursos Naturales y Agrobiologia, IRNAS-CSIC, Av. Reina 5 Systematic Mycology & Microbiology Laboratory, USDA-ARS, Rm. 246, Mercedes 10, 41012 Sevilla, Spain. B010A, 10300 Baltimore Ave., Beltsville, MD 20705, USA. 19 Czech Collection of Microorganisms, Institute of Experimental Bio logy, 6 Universidade Federal de Viçosa UFV, Campus Universitário, 36570-00, Faculty of Science, Masaryk University, Tvrdého 14, 602 00 Brno, Czech Viçosa, Brazil. Republic. 7 Department of Plant Pathology, University of Nebraska, Lincoln, NE 20 Center for Forest Mycology Research, Northern Research Station, USDA- 68583, USA. Forest Service, One Gifford Pinochet Dr., Madison, WI 53726, USA. 8 Gurney Road 45, Lower Hutt, New Zealand. 21 National Herbarium of the Netherlands, Naturalis Biodiversity Center, 9 REQUIMTE – CQFB and Departamento de Conservação e Restauro, Leiden University, P.O. Box 9514, 2300 RA Leiden, The Netherlands. Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, 22 CREM, Departamento de Ciências da Vida, Faculdade de Ciências e Monte de Caparica, 2829-516 Caparica, Portugal. Tecnologia, Universidade Nova de Lisboa, Monte de Caparica, 2829-516 10 Agronomy Department, University of Florida, Gainesville, FL 32611, USA. Caparica, Portugal. 11 School of Plant Science, University of Tasmania, Hobart, Australia. 23 Percy FitzPatrick Institute of African Ornithology, University of Cape 12 Agri-Science Queensland, PO Box 1054, Mareeba 4880, Queensland, Town, Rondebosch 7701, South Africa. Australia. 24 Department of Plant Pathology, University of the Free State, P.O. Box 13 School of Biological Sciences and Biotechnology, Murdoch University, 339, Bloemfontein 9300, South Africa. Murdoch, Western Australia, 6150. 25 Forest Science Institute of Vietnam, Dong Ngac, Tu Liem, Hanoi, Viet- 14 Department of Botany and Plant Pathology, Purdue University, South- nam. west Purdue Agricultural Program, 4369 North Purdue Rd., Vincennes, 26 Department of Natural Sciences, The University of Findlay, Findlay, OH IN 47591, USA. 45840, USA. © 2012 Nationaal Herbarium Nederland & Centraalbureau voor Schimmelcultures You are free to share - to copy, distribute and transmit the work, under the following conditions: Attribution: You must attribute the work in the manner specified by the author or licensor (but not in any way that suggests that they endorse you or your use of the work). Non-commercial: You may not use this work for commercial purposes. No derivative works: You may not alter, transform, or build upon this work. For any reuse or distribution, you must make clear to others the license terms of this work, which can be found at http://creativecommons.org/licenses/by-nc-nd/3.0/legalcode. Any of the above conditions can be waived if you get permission from the copyright holder. Nothing in this license impairs or restricts the author’s moral rights. Fungal Planet description sheets 147 Saccharomyces cerevisiae Z73326 Dothideomycetes sp. GU323986 Phaeococcomyces nigricans AF050278 Fungal Planet 133 - Phaeococcomyces eucalypti CPC 17606 Incertae sedis Dothideomycetes sp. GU323985 Fungal Planet 131 - Phyllosticta aristolochiicola JX486128 Phyllosticta abietis EU754193 Botryosphaeriales Phyllosticta minima EU754194 Toxicocladosporium irritans EU040243 Toxicocladosporium strelitziae JX069858 Toxicocladosporium pseudoveloxum JF499868 Fungal Planet 144 - Toxicocladosporium posoqueriae CPC 19305 Cladosporium ramotenellum JF499859 Cladosporium grevilleae JF770462 Zasmidium citri GQ852733 Ramichloridium cerophilum GU214485 0.10 Zasmidium nocoxi GQ852735 Fungal Planet 140 - Zasmidium syzygii CPC 19792 Zymoseptoria passerinii JQ739843 Fungal Planet 143 - Zymoseptoria verkleyi CBS 133618 Zymoseptoria tritici EU019298 Zymoseptoria brevis JQ739832 Fungal Planet 142 - Cercospora chrysanthemoides CPC 20529 Cercospora sojina GU253861 Mycosphaerella valgourgensis JF951175 Fungal Planet 152 - Passalora lobelia-fistulosae VIC 31840 Passalora brachycarpa GU214664 Capnodiales Pantospora guazumae JN190954 Fungal Planet 146 - Penidiella carpentariae CPC 19439 Fungal Planet 139 - Devriesia shakazului CPC 19782 Devriesia hilliana GU214414 Fungal Planet 151 - Devriesia imbrexigena CAP1373 Fungal Planet 141 - Devriesia stirlingiae CPC 19948 Devriesia lagerstroemiae GU214415 Teratosphaeria knoxdaviesii EU707865 Fungal Planet 134 - Penidiella drakensbergensis CPC 19778 Fungal Planet 145 - Catenulostroma corymbiae CPC 19437 Catenulostroma chromoblastomycosum EU019251 Teratosphaeria encephalarti FJ372417 Parapenidiella pseudotasmaniensis GQ852625 Parapenidiella tasmaniensis GU214452 Fungal Planet 148 - Microcyclospora rhoicola Microcyclospora malicola GU570550 Microcyclospora pomicola GU570551 Microcyclospora tardicrescens GU570552 Seiridium unicorne DQ414532 Fungal Planet 147 - Seiridium phylicae CPC 19964 Xylariales Seiridium eucalypti DQ414533 Fungal Planet 132 - Calonectria pentaseptata CBS 133349 Calonectria queenslandica GQ280741 Hypocreales Calonectria terrae-reginae GQ280779 Fungal Planet 128 - Valsalnicola oxystoma JX519563 Melanconis marginalis AF408373 Gnomonia petiolorum AY818963 Diaporthales Amphiporthe hranicensis DQ323521 Setosphaeria monoceras AY016368 Dendryphiella
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    Plant Pathology Science ﺩﺍﻧﺶ ﺑﻴﻤﺎﺭﻱﺷﻨﺎﺳﻲ ﮔﻴﺎﻫﻲ Volume 7(1), 2018 ISSN:2251-9270 ﺳﺎﻝ ﻫﻔﺘﻢ، ﺟﻠﺪ 1، ﭘﺎﻳﻴﺰﻭ ﺯﻣﺴﺘﺎﻥ 1396 ﺷﺎﭘﺎ: 2251-9270 Contents ﺩﺍﻧﺶ ﺑﻴﻤﺎﺭﻱ ﺷﻨﺎﺳﻲ ﮔﻴﺎﻫﻲ ﻓﻬﺮﺳﺖ ﻣﻄﺎﻟﺐ Title Page ﻋﻨﻮﺍﻥ ﺻﻔﺤﻪ 1- Important criteria for identification of the Cercospora species 1- ﻣﻌﻴﺎﺭﻫﺎﻱ ﻣﻬﻢ ﺷﻨﺎﺳﺎﻳﻲ ﮔ ﻮ ﻧ ﻪ ﻫ ﺎ ﻱ Cercospora M. Bakhshi………………………………………….…………………….……………….……….….1 ﻣﻮﻧﺲ ﺑﺨﺸﻲ...........................................................................................................................................................................1 2- Sooty canker of fruit trees in Iran 2- ﺷﺎﻧﻜﺮ ﺩ ﻭ ﺩ ﻩ ﺍ ﻱ ﺩﺭﺧﺘﺎﻥ ﻣﻴﻮﻩ ﺩﺭ ﺍﻳﺮﺍﻥ R. Dastjerdi, S. Nadi & S. Damyar……….………..……………………………………………….15 ﺭﻋﻨﺎ ﺩﺳﺘﺠﺮﺩﻱ، ﺳﻮﻟﻤﺎﺯ ﻧﺎﺩﻱ ﻭ ﺳﻴﻤﺎ ﺩﺍﻣﻴﺎﺭ...........................................................................................................................15 3- Root lesion nematode Pratylenchus thornei 3- ﻧﻤﺎﺗﺪ ﻣﻮﻟﺪ ﺯﺧﻢ ﺭﻳﺸﻪ Pratylenchus thornei E. Fatemi & H. Charehgani…………………………....…………………………………………...28 ﺍﺣﺴﺎﻥ ﻓﺎﻃﻤﻲ ﻭ ﺣﺒﻴﺐ ﺍﻟﻪ ﭼﺎﺭﻩ ﮔﺎﻧﻲ........................................................................................................................................28 4- Olive quick decline syndrome disease 4- ﺑﻴﻤﺎﺭﻱ ﺳﻨﺪﺭﻭﻡ ﺯﻭﺍﻝ ﺳﺮﻳﻊ ﺯﻳﺘﻮﻥ M. Keshavarzi…………..…..……………………………………………………………………..….40 ﻣﻨﺼﻮﺭﻩ ﻛﺸﺎﻭﺭﺯﻱ..................................................................................................................................................................40 5- Mycoviruses application in biocontrol of fugal pathogens ﺳﺎﻝ ﻫﻔﺘﻢ، ﺟﻠﺪ 1
  • Index of Fungal Names

    Index of Fungal Names

    INDEX OF FUNGAL NAMES Alternaria cerealis 187 Alternaria cetera 188–189 Alphabetical list of fungal species, genera and families treated in Alternaria chartarum 201 the Taxonomy sections of the included manuscripts. Alternaria chartarum f. stemphylioides 201 Alternaria cheiranthi 189 A Alternaria chlamydospora 190, 199 Alternaria chlamydosporigena 190 Acicuseptoria 376–377 Alternaria “chlamydosporum” 199 Acicuseptoria rumicis 376–377 Alternaria chrysanthemi 204 Allantozythia 384 Alternaria cichorii 200 Allewia 183 Alternaria cinerariae 202 Allewia eureka 193 Alternaria cinerea 207 Allewia proteae 193 Alternaria cirsinoxia 200 Alternaria 183, 186, 190, 193, 198, 207 Alternaria citriarbusti 187 Alternaria abundans 189 Alternaria citrimacularis 187 Alternaria acalyphicola 200 Alternaria colombiana 187 Alternaria agerati 200 Alternaria concatenata 201 Alternaria agripestis 200 Alternaria conjuncta 196 Alternaria allii 191 Alternaria conoidea 188 Alternaria alternantherae 185 Alternaria “consortiale” 204 Alternaria alternariae 206 Alternaria consortialis 204 Alternaria alternarina 195 Alternaria crassa 200 Alternaria cretica 200 Alternaria alternata 183, 185–186 Alternaria cucumerina 200 Alternaria anagallidis 200 Alternaria cucurbitae 204 Alternaria angustiovoidea 187 Alternaria cumini 193 Alternaria anigozanthi 193 Alternaria cyphomandrae 201 Alternaria aragakii 200 Alternaria danida 201 Alternaria araliae 199 Alternaria dauci 201 Alternaria arborescens 187, 201 Alternaria daucicaulis 196 Alternaria arbusti 195 Alternaria daucifollii 187
  • Characterising Plant Pathogen Communities and Their Environmental Drivers at a National Scale

    Characterising Plant Pathogen Communities and Their Environmental Drivers at a National Scale

    Lincoln University Digital Thesis Copyright Statement The digital copy of this thesis is protected by the Copyright Act 1994 (New Zealand). This thesis may be consulted by you, provided you comply with the provisions of the Act and the following conditions of use: you will use the copy only for the purposes of research or private study you will recognise the author's right to be identified as the author of the thesis and due acknowledgement will be made to the author where appropriate you will obtain the author's permission before publishing any material from the thesis. Characterising plant pathogen communities and their environmental drivers at a national scale A thesis submitted in partial fulfilment of the requirements for the Degree of Doctor of Philosophy at Lincoln University by Andreas Makiola Lincoln University, New Zealand 2019 General abstract Plant pathogens play a critical role for global food security, conservation of natural ecosystems and future resilience and sustainability of ecosystem services in general. Thus, it is crucial to understand the large-scale processes that shape plant pathogen communities. The recent drop in DNA sequencing costs offers, for the first time, the opportunity to study multiple plant pathogens simultaneously in their naturally occurring environment effectively at large scale. In this thesis, my aims were (1) to employ next-generation sequencing (NGS) based metabarcoding for the detection and identification of plant pathogens at the ecosystem scale in New Zealand, (2) to characterise plant pathogen communities, and (3) to determine the environmental drivers of these communities. First, I investigated the suitability of NGS for the detection, identification and quantification of plant pathogens using rust fungi as a model system.