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Ciliate Diversity, Community Structure, and Novel Taxa in Lakes of the Mcmurdo Dry Valleys, Antarctica
Reference: Biol. Bull. 227: 175–190. (October 2014) © 2014 Marine Biological Laboratory Ciliate Diversity, Community Structure, and Novel Taxa in Lakes of the McMurdo Dry Valleys, Antarctica YUAN XU1,*†, TRISTA VICK-MAJORS2, RACHAEL MORGAN-KISS3, JOHN C. PRISCU2, AND LINDA AMARAL-ZETTLER4,5,* 1Laboratory of Protozoology, Institute of Evolution & Marine Biodiversity, Ocean University of China, Qingdao 266003, China; 2Montana State University, Department of Land Resources and Environmental Sciences, 334 Leon Johnson Hall, Bozeman, Montana 59717; 3Department of Microbiology, Miami University, Oxford, Ohio 45056; 4The Josephine Bay Paul Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory, Woods Hole, Massachusetts 02543; and 5Department of Earth, Environmental and Planetary Sciences, Brown University, Providence, Rhode Island 02912 Abstract. We report an in-depth survey of next-genera- trends in dissolved oxygen concentration and salinity may tion DNA sequencing of ciliate diversity and community play a critical role in structuring ciliate communities. A structure in two permanently ice-covered McMurdo Dry PCR-based strategy capitalizing on divergent eukaryotic V9 Valley lakes during the austral summer and autumn (No- hypervariable region ribosomal RNA gene targets unveiled vember 2007 and March 2008). We tested hypotheses on the two new genera in these lakes. A novel taxon belonging to relationship between species richness and environmental an unknown class most closely related to Cryptocaryon conditions -
PROTISTAS MARINOS Viviana A
PROTISTAS MARINOS Viviana A. Alder INTRODUCCIÓN plantas y animales. Según este esquema básico, a las plantas les correspondían las características de En 1673, el editor de Philosophical Transac- ser organismos sésiles con pigmentos fotosinté- tions of the Royal Society of London recibió una ticos para la síntesis de las sustancias esenciales carta del anatomista Regnier de Graaf informan- para su metabolismo a partir de sustancias inor- do que un comerciante holandés, Antonie van gánicas (nutrición autótrofa), y de poseer células Leeuwenhoek, había “diseñado microscopios rodeadas por paredes de celulosa. En oposición muy superiores a aquéllos que hemos visto has- a las plantas, les correspondía a los animales los ta ahora”. Van Leeuwenhoek vendía lana, algo- atributos de tener motilidad activa y de carecer dón y otros materiales textiles, y se había visto tanto de pigmentos fotosintéticos (debiendo por en la necesidad de mejorar las lentes de aumento lo tanto procurarse su alimento a partir de sustan- que comúnmente usaba para contar el número cias orgánicas sintetizadas por otros organismos) de hebras y evaluar la calidad de fibras y tejidos. como de paredes celulósicas en sus células. Así fue que construyó su primer microscopio de Es a partir de los estudios de Georg Gol- lente única: simple, pequeño, pero con un poder dfuss (1782-1848) que estos diminutos organis- de magnificación de hasta 300 aumentos (¡diez mos, invisibles a ojo desnudo, comienzan a ser veces más que sus precursores!). Este magnífico clasificados como plantas primarias -
Dynamic of the Sargassum Tide Holobiont in the Caribbean Islands
From the Sea to the Land: Dynamic of the Sargassum Tide Holobiont in the Caribbean Islands Pascal Jean Lopez ( [email protected] ) CNRS Délégation Paris B https://orcid.org/0000-0002-9914-4252 Vincent Hervé Max-Planck-Institut for Terrestrial Microbiology Josie Lambourdière Centre National de la Recherche Scientique Malika René-Trouillefou Universite des Antilles et de la Guyane Damien Devault Centre National de la Recherche Scientique Research Keywords: Macroalgae, Methanogenic archaea, Sulfate-reducing bacteria, Epibiont, Microbial communities, Nematodes, Ciliates Posted Date: June 9th, 2020 DOI: https://doi.org/10.21203/rs.3.rs-33861/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 1/27 Abstract Background Over the last decade, intensity and frequency of Sargassum blooms in the Caribbean Sea and central Atlantic Ocean have dramatically increased, causing growing ecological, social and economic concern throughout the entire Caribbean region. These golden-brown tides form an ecosystem that maintains life for a large number of associated species, and their circulation across the Atlantic Ocean support the displacement and maybe the settlement of various species, especially microorganisms. To comprehensively identify the micro- and meiofauna associated to Sargassum, one hundred samples were collected during the 2018 tide events that were the largest ever recorded. Results We investigated the composition and the existence of specic species in three compartments, namely, Sargassum at tide sites, in the surrounding seawater, and in inland seaweed storage sites. Metabarcoding data revealed shifts between compartments in both prokaryotic and eukaryotic communities, and large differences for eukaryotes especially bryozoans, nematodes and ciliates. -
Biologia Celular – Cell Biology
Biologia Celular – Cell Biology BC001 - Structural Basis of the Interaction of a Trypanosoma cruzi Surface Molecule Implicated in Oral Infection with Host Cells and Gastric Mucin CORTEZ, C.*1; YOSHIDA, N.1; BAHIA, D.1; SOBREIRA, T.2 1.UNIFESP, SÃO PAULO, SP, BRASIL; 2.SINCROTRON, CAMPINAS, SP, BRASIL. e-mail:[email protected] Host cell invasion and dissemination within the host are hallmarks of virulence for many pathogenic microorganisms. As concerns Trypanosoma cruzi that causes Chagas disease, the insect vector-derived metacyclic trypomastigotes (MT) initiate infection by invading host cells, and later blood trypomastigotes disseminate to diverse organs and tissues. Studies with MT generated in vitro and tissue culture-derived trypomastigotes (TCT), as counterparts of insect- borne and bloodstream parasites, have implicated members of the gp85/trans-sialidase superfamily, MT gp82 and TCT Tc85-11, in cell invasion and interaction with host factors. Here we analyzed the gp82 structure/function characteristics and compared them with those previously reported for Tc85-11. One of the gp82 sequences identified as a cell binding site consisted of an alpha-helix, which connects the N-terminal beta-propeller domain to the C- terminal beta-sandwich domain where the second binding site is nested. In the gp82 structure model, both sites were exposed at the surface. Unlike gp82, the Tc85-11 cell adhesion sites are located in the N-terminal beta-propeller region. The gp82 sequence corresponding to the epitope for a monoclonal antibody that inhibits MT entry into target cells was exposed on the surface, upstream and contiguous to the alpha-helix. Located downstream and close to the alpha-helix was the gp82 gastric mucin binding site, which plays a central role in oral T. -
VII EUROPEAN CONGRESS of PROTISTOLOGY in Partnership with the INTERNATIONAL SOCIETY of PROTISTOLOGISTS (VII ECOP - ISOP Joint Meeting)
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/283484592 FINAL PROGRAMME AND ABSTRACTS BOOK - VII EUROPEAN CONGRESS OF PROTISTOLOGY in partnership with THE INTERNATIONAL SOCIETY OF PROTISTOLOGISTS (VII ECOP - ISOP Joint Meeting) Conference Paper · September 2015 CITATIONS READS 0 620 1 author: Aurelio Serrano Institute of Plant Biochemistry and Photosynthesis, Joint Center CSIC-Univ. of Seville, Spain 157 PUBLICATIONS 1,824 CITATIONS SEE PROFILE Some of the authors of this publication are also working on these related projects: Use Tetrahymena as a model stress study View project Characterization of true-branching cyanobacteria from geothermal sites and hot springs of Costa Rica View project All content following this page was uploaded by Aurelio Serrano on 04 November 2015. The user has requested enhancement of the downloaded file. VII ECOP - ISOP Joint Meeting / 1 Content VII ECOP - ISOP Joint Meeting ORGANIZING COMMITTEES / 3 WELCOME ADDRESS / 4 CONGRESS USEFUL / 5 INFORMATION SOCIAL PROGRAMME / 12 CITY OF SEVILLE / 14 PROGRAMME OVERVIEW / 18 CONGRESS PROGRAMME / 19 Opening Ceremony / 19 Plenary Lectures / 19 Symposia and Workshops / 20 Special Sessions - Oral Presentations / 35 by PhD Students and Young Postdocts General Oral Sessions / 37 Poster Sessions / 42 ABSTRACTS / 57 Plenary Lectures / 57 Oral Presentations / 66 Posters / 231 AUTHOR INDEX / 423 ACKNOWLEDGMENTS-CREDITS / 429 President of the Organizing Committee Secretary of the Organizing Committee Dr. Aurelio Serrano -
Deep Sequencing of Subseafloor Eukaryotic Rrna Reveals Active Fungi Across Marine Subsurface Provinces
Deep Sequencing of Subseafloor Eukaryotic rRNA Reveals Active Fungi across Marine Subsurface Provinces William Orsi1*, Jennifer F. Biddle2, Virginia Edgcomb1 1 Department of Geology and Geophysics, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts, United States of America, 2 College of Earth, Ocean, and Environment, University of Delaware, Lewes, Delaware, United States of America Abstract The deep marine subsurface is a vast habitat for microbial life where cells may live on geologic timescales. Because DNA in sediments may be preserved on long timescales, ribosomal RNA (rRNA) is suggested to be a proxy for the active fraction of a microbial community in the subsurface. During an investigation of eukaryotic 18S rRNA by amplicon pyrosequencing, unique profiles of Fungi were found across a range of marine subsurface provinces including ridge flanks, continental margins, and abyssal plains. Subseafloor fungal populations exhibit statistically significant correlations with total organic carbon (TOC), nitrate, sulfide, and dissolved inorganic carbon (DIC). These correlations are supported by terminal restriction length polymorphism (TRFLP) analyses of fungal rRNA. Geochemical correlations with fungal pyrosequencing and TRFLP data from this geographically broad sample set suggests environmental selection of active Fungi in the marine subsurface. Within the same dataset, ancient rRNA signatures were recovered from plants and diatoms in marine sediments ranging from 0.03 to 2.7 million years old, suggesting that rRNA from some eukaryotic taxa may be much more stable than previously considered in the marine subsurface. Citation: Orsi W, Biddle JF, Edgcomb V (2013) Deep Sequencing of Subseafloor Eukaryotic rRNA Reveals Active Fungi across Marine Subsurface Provinces. PLoS ONE 8(2): e56335. -
Morphology, Ultrastructure, Genomics, and Phylogeny of Euplotes Vanleeuwenhoeki Sp
www.nature.com/scientificreports OPEN Morphology, ultrastructure, genomics, and phylogeny of Euplotes vanleeuwenhoeki sp. nov. and its ultra‑reduced endosymbiont “Candidatus Pinguicoccus supinus” sp. nov. Valentina Serra1,7, Leandro Gammuto1,7, Venkatamahesh Nitla1, Michele Castelli2,3, Olivia Lanzoni1, Davide Sassera3, Claudio Bandi2, Bhagavatula Venkata Sandeep4, Franco Verni1, Letizia Modeo1,5,6* & Giulio Petroni1,5,6* Taxonomy is the science of defning and naming groups of biological organisms based on shared characteristics and, more recently, on evolutionary relationships. With the birth of novel genomics/ bioinformatics techniques and the increasing interest in microbiome studies, a further advance of taxonomic discipline appears not only possible but highly desirable. The present work proposes a new approach to modern taxonomy, consisting in the inclusion of novel descriptors in the organism characterization: (1) the presence of associated microorganisms (e.g.: symbionts, microbiome), (2) the mitochondrial genome of the host, (3) the symbiont genome. This approach aims to provide a deeper comprehension of the evolutionary/ecological dimensions of organisms since their very frst description. Particularly interesting, are those complexes formed by the host plus associated microorganisms, that in the present study we refer to as “holobionts”. We illustrate this approach through the description of the ciliate Euplotes vanleeuwenhoeki sp. nov. and its bacterial endosymbiont “Candidatus Pinguicoccus supinus” gen. nov., sp. nov. The endosymbiont possesses an extremely reduced genome (~ 163 kbp); intriguingly, this suggests a high integration between host and symbiont. Taxonomy is the science of defning and naming groups of biological organisms based on shared characteristics and, more recently, based on evolutionary relationships. Classical taxonomy was exclusively based on morpho- logical-comparative techniques requiring a very high specialization on specifc taxa. -
The Hydrogenosomes of Psalteriomonas Lanterna
BMC Evolutionary Biology BioMed Central Research article Open Access The hydrogenosomes of Psalteriomonas lanterna Rob M de Graaf†1, Isabel Duarte†2, Theo A van Alen1, Jan WP Kuiper1,4, Klaas Schotanus1,5, Jörg Rosenberg3, Martijn A Huynen2,6 and Johannes HP Hackstein*1 Address: 1Department of Evolutionary Microbiology, IWWR, Radboud University Nijmegen, Heyendaalseweg 135, 6525AJ Nijmegen, The Netherlands, 2Center for Molecular and Biomolecular Informatics, Nijmegen Center for Molecular Life Sciences, Radboud University Nijmegen Medical Centre, Geert Grooteplein 28, 6525GA Nijmegen, The Netherlands, 3Sommerhaus 45, D-50129 Bergheim, Germany, 4CIHR Group in Matrix Dynamics, University of Toronto, 150 College Street, Toronto, Ontario, Canada M5S 3E2, 5Department of Ecology and Evolutionary Biology, 106A Guyot Hall, Princeton University, Princeton NJ 08554-2016, USA and 6Netherlands Bioinformatic Centre, Geert Grooteplein 28, 6525 GA Nijmegen, The Netherlands Email: Rob M de Graaf - [email protected]; Isabel Duarte - [email protected]; Theo A van Alen - [email protected]; Jan WP Kuiper - [email protected]; Klaas Schotanus - [email protected]; Jörg Rosenberg - [email protected]; Martijn A Huynen - [email protected]; Johannes HP Hackstein* - [email protected] * Corresponding author †Equal contributors Published: 9 December 2009 Received: 20 July 2009 Accepted: 9 December 2009 BMC Evolutionary Biology 2009, 9:287 doi:10.1186/1471-2148-9-287 This article is available from: http://www.biomedcentral.com/1471-2148/9/287 © 2009 de Graaf et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. -
The Revised Classification of Eukaryotes
Published in Journal of Eukaryotic Microbiology 59, issue 5, 429-514, 2012 which should be used for any reference to this work 1 The Revised Classification of Eukaryotes SINA M. ADL,a,b ALASTAIR G. B. SIMPSON,b CHRISTOPHER E. LANE,c JULIUS LUKESˇ,d DAVID BASS,e SAMUEL S. BOWSER,f MATTHEW W. BROWN,g FABIEN BURKI,h MICAH DUNTHORN,i VLADIMIR HAMPL,j AARON HEISS,b MONA HOPPENRATH,k ENRIQUE LARA,l LINE LE GALL,m DENIS H. LYNN,n,1 HILARY MCMANUS,o EDWARD A. D. MITCHELL,l SHARON E. MOZLEY-STANRIDGE,p LAURA W. PARFREY,q JAN PAWLOWSKI,r SONJA RUECKERT,s LAURA SHADWICK,t CONRAD L. SCHOCH,u ALEXEY SMIRNOVv and FREDERICK W. SPIEGELt aDepartment of Soil Science, University of Saskatchewan, Saskatoon, SK, S7N 5A8, Canada, and bDepartment of Biology, Dalhousie University, Halifax, NS, B3H 4R2, Canada, and cDepartment of Biological Sciences, University of Rhode Island, Kingston, Rhode Island, 02881, USA, and dBiology Center and Faculty of Sciences, Institute of Parasitology, University of South Bohemia, Cˇeske´ Budeˇjovice, Czech Republic, and eZoology Department, Natural History Museum, London, SW7 5BD, United Kingdom, and fWadsworth Center, New York State Department of Health, Albany, New York, 12201, USA, and gDepartment of Biochemistry, Dalhousie University, Halifax, NS, B3H 4R2, Canada, and hDepartment of Botany, University of British Columbia, Vancouver, BC, V6T 1Z4, Canada, and iDepartment of Ecology, University of Kaiserslautern, 67663, Kaiserslautern, Germany, and jDepartment of Parasitology, Charles University, Prague, 128 43, Praha 2, Czech -
Adl S.M., Simpson A.G.B., Lane C.E., Lukeš J., Bass D., Bowser S.S
The Journal of Published by the International Society of Eukaryotic Microbiology Protistologists J. Eukaryot. Microbiol., 59(5), 2012 pp. 429–493 © 2012 The Author(s) Journal of Eukaryotic Microbiology © 2012 International Society of Protistologists DOI: 10.1111/j.1550-7408.2012.00644.x The Revised Classification of Eukaryotes SINA M. ADL,a,b ALASTAIR G. B. SIMPSON,b CHRISTOPHER E. LANE,c JULIUS LUKESˇ,d DAVID BASS,e SAMUEL S. BOWSER,f MATTHEW W. BROWN,g FABIEN BURKI,h MICAH DUNTHORN,i VLADIMIR HAMPL,j AARON HEISS,b MONA HOPPENRATH,k ENRIQUE LARA,l LINE LE GALL,m DENIS H. LYNN,n,1 HILARY MCMANUS,o EDWARD A. D. MITCHELL,l SHARON E. MOZLEY-STANRIDGE,p LAURA W. PARFREY,q JAN PAWLOWSKI,r SONJA RUECKERT,s LAURA SHADWICK,t CONRAD L. SCHOCH,u ALEXEY SMIRNOVv and FREDERICK W. SPIEGELt aDepartment of Soil Science, University of Saskatchewan, Saskatoon, SK, S7N 5A8, Canada, and bDepartment of Biology, Dalhousie University, Halifax, NS, B3H 4R2, Canada, and cDepartment of Biological Sciences, University of Rhode Island, Kingston, Rhode Island, 02881, USA, and dBiology Center and Faculty of Sciences, Institute of Parasitology, University of South Bohemia, Cˇeske´ Budeˇjovice, Czech Republic, and eZoology Department, Natural History Museum, London, SW7 5BD, United Kingdom, and fWadsworth Center, New York State Department of Health, Albany, New York, 12201, USA, and gDepartment of Biochemistry, Dalhousie University, Halifax, NS, B3H 4R2, Canada, and hDepartment of Botany, University of British Columbia, Vancouver, BC, V6T 1Z4, Canada, and iDepartment -
Evolution of Hydrogenosomes in Anaerobic Ciliates
Evolution of hydrogenosomes in anaerobic ciliates William H. Lewis Doctor of Philosophy Institute for Cell and Molecular Biosciences March 2017 i Abstract Within ciliates (protozoa of the phylum Ciliophora), anaerobic species are widespread and typically possess organelles which produce H2 and ATP, called hydrogenosomes. Hydrogenosomes are mitochondrial homologues and are a product of evolutionary convergence, having been found in wide-ranging and diverse anaerobic eukaryotes. Ciliates seem to have evolved hydrogenosomes on multiple occasions from the mitochondria of their aerobic ancestors. The hydrogenosomes of the ciliate Nyctotherus ovalis were studied in detail previously but little is known about the hydrogenosomes from other ciliate species. In the present study seven species of ciliate, Cyclidium porcatum, Metopus contortus, Metopus es, Metopus striatus, Nyctotherus ovalis, Plagiopyla frontata and Trimyema sp. were cultured and their hydrogenosomes were investigated using genomic and transcriptomic sequencing from whole genome amplifications from single and small numbers of isolated cells. The data were then used to reconstruct putative hydrogenosome metabolic pathways. Components of these pathways are typically encoded by the ciliate nuclear genomes but Nyctotherus ovalis, Metopus contortus, Metopus es, Metopus striatus and Cyclidium porcatum have also retained mitochondrial (now hydrogenosomal) genomes which were sequenced for the first time. The most complete of these genomes were from Nyctotherus ovalis and Metopus contortus. -
Los Invertebrados Marinos
LOS INVERTEBRADOS MARINOS Editor responsable Javier A. Calcagno LOS INVERTEBRADOS MARINOS VAZQUEZ MAZZINI EDITORES Fundación de Historia Natural Félix de Azara Departamento de Ciencias Naturales y Antropológicas CEBBAD - Instituto Superior de Investigaciones Universidad Maimónides Hidalgo 775 - 7° piso (1405BDB), Ciudad Autónoma de Buenos Aires, República Argentina. Teléfonos: 011-4905-1100 (int. 1228) E-mail: [email protected] Página web: www.fundacionazara.org.ar Editor responsable: Javier A. Calcagno Foto de Tapa: Sergio Massaro Fotos de contratapa: Foto de la izquierda, Gentileza de Agustín Schiariti Las otras fotos son Gentileza de Cota Cero Buceo (Las Grutas, Río Negro) Realización, diseño y producción gráfica: José Luis Vázquez, Fernando Vázquez Mazzini y Cristina Zavatarelli Vázquez Mazzini Editores [email protected] www.vmeditores.com.ar Re ser va dos los de re chos pa ra to dos los paí ses. Nin gu na par te de es ta pu bli ca ción, in cluido el di se ño de la cu bier ta, pue de ser re pro du ci da, al ma ce na da, o trans mi ti da de nin gu na for ma, ni por nin gún me dio, sea es te electró ni co, quí- mi co, me cá ni co, electro-óp ti co, gra ba ción, fo to co pia, CD Rom, In ter net, o cual quier otro, sin la pre via au to ri za ción es cri ta por par te de la edi to rial. Este trabajo refleja exclusivamente las opiniones profesionales y científicas de los autores y no es responsabilidad de la editorial el contenido de la presente obra.