Helianthus Annuus L., Asteraceae)
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution
Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution by William Allen Freyman A dissertation submitted in partial satisfaction of the requirements for the degree of Doctor of Philosophy in Integrative Biology and the Designated Emphasis in Computational and Genomic Biology in the Graduate Division of the University of California, Berkeley Committee in charge: Dr. Bruce G. Baldwin, Chair Dr. John P. Huelsenbeck Dr. Brent D. Mishler Dr. Kipling W. Will Fall 2017 Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution Copyright 2017 by William Allen Freyman Abstract Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution by William Allen Freyman Doctor of Philosophy in Integrative Biology and the Designated Emphasis in Computational and Genomic Biology University of California, Berkeley Dr. Bruce G. Baldwin, Chair Key evolutionary transitions have shaped the tree of life by driving the processes of spe- ciation and extinction. This dissertation aims to advance statistical and computational ap- proaches that model the timing and nature of these transitions over evolutionary trees. These methodological developments in phylogenetic comparative biology enable formal, model- based, statistical examinations of the macroevolutionary consequences of trait evolution. Chapter 1 presents computational tools for data mining the large-scale molecular sequence datasets needed for comparative phylogenetic analyses. I describe a novel metric, the miss- ing sequence decisiveness score (MSDS), which assesses the phylogenetic decisiveness of a matrix given the pattern of missing sequence data. In Chapter 2, I introduce a class of phylogenetic models of chromosome number evolution that accommodate both anagenetic and cladogenetic change. -
Characterization of CYP71AX36 from Sunflower (Helianthus Annuus L., Asteraceae)
www.nature.com/scientificreports OPEN Characterization of CYP71AX36 from Sunfower (Helianthus annuus L., Asteraceae) Received: 23 April 2019 Maximilian Frey 1, Iris Klaiber2, Jürgen Conrad3, Aylin Bersch1, Irini Pateraki 4, Accepted: 10 September 2019 Dae-Kyun Ro5 & Otmar Spring1 Published: xx xx xxxx Sesquiterpene lactones (STL) are a subclass of isoprenoids with many known bioactivities frequently found in the Asteraceae family. In recent years, remarkable progress has been made regarding the biochemistry of STL, and today the biosynthetic pathway of the core backbones of many STLs has been elucidated. Consequently, the focus has shifted to the discovery of the decorating enzymes that can modify the core skeleton with functional hydroxy groups. Using in vivo pathway reconstruction assays in heterologous organisms such as Saccharomyces cerevisiae and Nicotiana benthamiana, we have analyzed several cytochrome P450 enzyme genes of the CYP71AX subfamily from Helianthus annuus clustered in close proximity to one another on the sunfower genome. We show that one member of this subfamily, CYP71AX36, can catalyze the conversion of costunolide to 14-hydroxycostunolide. The catalytic activity of CYP71AX36 may be of use for the chemoenzymatic production of antileukemic 14-hydroxycostunolide derivatives and other STLs of pharmaceutical interest. We also describe the full 2D-NMR assignment of 14-hydroxycostunolide and provide all 13C chemical shifts of the carbon skeleton for the frst time. Sesquiterpene lactones (STL) are a diverse group of specialized plant metabolites, particularly characteristic to the Asteraceae family, which contain a C15 backbone and an α-methylene γ-lactone ring1. Recently, the enzy- matic steps leading to the basic 6,7-cis and 7,8-trans STL structures, such as costunolide (1) and inunolide, have been described. -
Baja California, Mexico, and a Vegetation Map of Colonet Mesa Alan B
Aliso: A Journal of Systematic and Evolutionary Botany Volume 29 | Issue 1 Article 4 2011 Plants of the Colonet Region, Baja California, Mexico, and a Vegetation Map of Colonet Mesa Alan B. Harper Terra Peninsular, Coronado, California Sula Vanderplank Rancho Santa Ana Botanic Garden, Claremont, California Mark Dodero Recon Environmental Inc., San Diego, California Sergio Mata Terra Peninsular, Coronado, California Jorge Ochoa Long Beach City College, Long Beach, California Follow this and additional works at: http://scholarship.claremont.edu/aliso Part of the Biodiversity Commons, Botany Commons, and the Ecology and Evolutionary Biology Commons Recommended Citation Harper, Alan B.; Vanderplank, Sula; Dodero, Mark; Mata, Sergio; and Ochoa, Jorge (2011) "Plants of the Colonet Region, Baja California, Mexico, and a Vegetation Map of Colonet Mesa," Aliso: A Journal of Systematic and Evolutionary Botany: Vol. 29: Iss. 1, Article 4. Available at: http://scholarship.claremont.edu/aliso/vol29/iss1/4 Aliso, 29(1), pp. 25–42 ’ 2011, Rancho Santa Ana Botanic Garden PLANTS OF THE COLONET REGION, BAJA CALIFORNIA, MEXICO, AND A VEGETATION MAPOF COLONET MESA ALAN B. HARPER,1 SULA VANDERPLANK,2 MARK DODERO,3 SERGIO MATA,1 AND JORGE OCHOA4 1Terra Peninsular, A.C., PMB 189003, Suite 88, Coronado, California 92178, USA ([email protected]); 2Rancho Santa Ana Botanic Garden, 1500 North College Avenue, Claremont, California 91711, USA; 3Recon Environmental Inc., 1927 Fifth Avenue, San Diego, California 92101, USA; 4Long Beach City College, 1305 East Pacific Coast Highway, Long Beach, California 90806, USA ABSTRACT The Colonet region is located at the southern end of the California Floristic Province, in an area known to have the highest plant diversity in Baja California. -
Copyright by Ruth Evangeline Timme 2006
Copyright by Ruth Evangeline Timme 2006 The Dissertation Committee for Ruth Evangeline Timme Certifies that this is the approved version of the following dissertation: Reticulate Evolution in Helianthus (Asteraceae) Committee: C. Randal Linder, Supervisor Beryl B. Simpson, Co-Supervisor Robert K. Jansen Thomas E. Juenger David M. Hillis Reticulate Evolution in Helianthus (Asteraceae) by Ruth Evangeline Timme, B.S.; M.A. Dissertation Presented to the Faculty of the Graduate School of The University of Texas at Austin in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy The University of Texas at Austin August 2006 Acknowledgements First, I want to thank both of my advisors: Randy Linder for his funding for my project and providing me with an RAship for two years, and both Randy Linder and my co-advisor, Beryl Simpson, for all their helpful advise and support during my time at UT. They both have been so willing to help at a moments notice and have been excellent advisors. I also want to thank Bob Jansen who advised my on my fourth chapter and has served as an informal third advisor for my dissertation. My other two committee members, Tom Juenger and David Hillis were also very accommodating throughout the years in scheduling committee meetings and in giving insightful comments and feedback to my research. I am also grateful to Sheri Church and Eric Baack for sending me leaf material and allowing me to use a molecular marker they had developed in the Rieseberg lab. Also Sherri Church performed two plates of sequences for the polyploids and has been very helpful in discussions regarding my project. -
UC Berkeley UC Berkeley Electronic Theses and Dissertations
UC Berkeley UC Berkeley Electronic Theses and Dissertations Title Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution Permalink https://escholarship.org/uc/item/29n8r0nm Author Freyman, William Allen Publication Date 2017 Peer reviewed|Thesis/dissertation eScholarship.org Powered by the California Digital Library University of California Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution by William Allen Freyman A dissertation submitted in partial satisfaction of the requirements for the degree of Doctor of Philosophy in Integrative Biology and the Designated Emphasis in Computational and Genomic Biology in the Graduate Division of the University of California, Berkeley Committee in charge: Dr. Bruce G. Baldwin, Chair Dr. John P. Huelsenbeck Dr. Brent D. Mishler Dr. Kipling W. Will Fall 2017 Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution Copyright 2017 by William Allen Freyman Abstract Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution by William Allen Freyman Doctor of Philosophy in Integrative Biology and the Designated Emphasis in Computational and Genomic Biology University of California, Berkeley Dr. Bruce G. Baldwin, Chair Key evolutionary transitions have shaped the tree of life by driving the processes of spe- ciation and extinction. This dissertation aims to advance statistical and computational ap- proaches that model the timing and nature of these transitions over evolutionary trees. These methodological developments in phylogenetic comparative biology enable formal, model- based, statistical examinations of the macroevolutionary consequences of trait evolution. Chapter 1 presents computational tools for data mining the large-scale molecular sequence datasets needed for comparative phylogenetic analyses. -
Chapter 1 Wild Plant Genetic Resources in North America
Published by: Springer Nature Switzerland AG 2018 Citation: Greene SL, Khoury CK, and Williams KA (2018). “Wild plant genetic resources in North America: an overview”. In: Greene SL, Williams KA, Khoury CK, Kantar MB, and Marek LF, eds., North American Crop Wild Relatives, Volume 1: Conservation Strategies. Springer, doi: 10.1007/978-3-319-95101-0_1. https://doi.org/10.1007/978-3-319-95101-0_1 https://link.springer.com/chapter/10.1007%2F978-3-319-95101-0_1 Chapter 1 Wild plant genetic resources in North America: an overview Stephanie L. Greene*, Colin K. Khoury, and Karen A. Williams Stephanie L. Greene*, USDA, Agricultural Research Service, Center for Agricultural Resources Research, National Laboratory for Genetic Resources Preservation, Fort Collins, CO, USA, [email protected] *corresponding author Colin K. Khoury, USDA, Agricultural Research Service, Center for Agricultural Resources Research, National Laboratory for Genetic Resources Preservation, Fort Collins, CO, USA and International Center for Tropical Agriculture (CIAT), Cali, Colombia [email protected], [email protected] Karen A. Williams, USDA, Agricultural Research Service, National Germplasm Resources Laboratory, Beltsville Agricultural Research Center ,Beltsville, MD, USA, [email protected] Abstract North America, including Canada, Mexico and the United States, is rich in plant species used by humans in both ancient and modern times. A select number of these have become globally important domesticated crops, including maize, beans, cotton, and sunflower. Many other native and also naturalized species have potential for use, either directly or as genetic resources for breeding agricultural crops. However, despite increasing recognition of their potential value, deficiencies in information, conservation, and access to the diversity in these plants hinder their further use. -
Santa Monica Mountains National Recreation Area Vascular Plant
Santa Monica Mountains National Recreation Area Vascular Plant Species List (as derived from NPSpecies 18 Dec 2006) FAMILY NAME Scientific Name (Common Name) (* = non-native) - [Abundance] ASPLENIACEAE AIZOACEAE Asplenium vespertinum (spleenwort) - [Rare] Carpobrotus edulis (hottentot-fig) * - [Common] Galenia pubescens * - [Rare] AZOLLACEAE Malephora crocea * - [Uncommon] Azolla filiculoides (duck fern, mosquito fern) - [Rare] Mesembryanthemum crystallinum (common ice plant) * - [Common] BLECHNACEAE Mesembryanthemum nodiflorum (slender-leaved ice plant) * Woodwardia fimbriata (chain fern) - [Uncommon] - [Uncommon] DENNSTAEDTIACEAE Tetragonia tetragonioides (New Zealand-spinach) * - Pteridium aquilinum var. pubescens (western bracken) - [Uncommon] [Uncommon] AMARANTHACEAE DRYOPTERIDACEAE Amaranthus albus (tumbleweed) - [Common] Dryopteris arguta (coastal woodfern) - [Common] Amaranthus blitoides (prostrate pigweed) * - [Common] Amaranthus californicus (California amaranth) - [Uncommon] EQUISETACEAE Amaranthus deflexus (low amaranth) * - [Uncommon] Equisetum arvense - [Uncommon] Amaranthus powellii - [Unknown] Equisetum hyemale ssp. affine (common scouring rush) - Amaranthus retroflexus (rough pigweed) * - [Common] [Uncommon] Equisetum laevigatum (smooth scouring-rush) - [Uncommon] ANACARDIACEAE Equisetum telmateia ssp. braunii (giant horsetail) - Malosma laurina (laurel sumac) - [Common] [Uncommon] Rhus integrifolia (lemonadeberry) - [Common] Equisetum X ferrissi ((sterile hybrid)) - [Unknown] Rhus ovata (sugar -
Sensitive Plant Species Surveys: Santa Clara River" (2004; 2004A) SENSITIVE PLANT SPECIES SURVEYS
FLx, "Sensitive Plant Species Surveys: Santa Clara River" (2004; 2004A) SENSITIVE PLANT SPECIES SURVEYS SANTA CLARA RIVER NEWHALL RANCH/VALENCIA COMPANY PROJECT SITES LOS ANGELES COUNTY, CALIFORNIA Submitted to: NEWHALL LAND AND FARMING COMPANY 23823 Valencia Boulevard Valencia, CA 91355 ATTN: Mark Subbotin Submitted by: Anuja Parikh, Ph.D., PWS Nathan Gale, Ph.D., PWS FLx 1215 Bajada Santa Barbara, CA 93109 Tel/FAX: 805-564-1352 October 2004 Sensitive Plant Species Surveys, Santa Clara River 1. INTRODUCTION The Santa Clara River in the Newhall Ranch/Valencia Company project area, Los Angeles County, California, was surveyed for sensitive plant species and vegetation types in 2004. The area surveyed in the main channel of the river extended from the Water Reclamation Plant, located at Rye Canyon Road south of the junction of Interstate 5 and State Highway 126, westwards to the Los Angeles/Ventura County line. In addition, the tributary Castaic Creek was surveyed from Interstate 5 southwest to its confluence with the main river channel (Figure 1). The length of the Santa Clara River surveyed was approximately 6.8 miles, and that of Castaic Creek was about 2.6 miles. In both these riparian corridors, the extent of surveys included the scoured channel bottom, sandbars and islands in the channel, and low terraces at the immediate edge of the channels. Agricultural activities currently constitute the primary land use in most of the surrounding area. A team of two consultants from FLx (Dr. Anuja Parikh and Dr. Nathan Gale) conducted the vegetation and sensitive plant species surveys in two phases. The first survey was carried out from May 31 through June 3, and from June 15 through June 17, 2004. -
DISTRIBUTION of Helianthus, Viguiera and Tithonia GENERA in MEXTCO
HELU,18, Nr. 23,p.p.27-40 ("1995) UDC s28'9982 (72) DISTRIBUTION OF Helianthus, Viguiera AND Tithonia GENERA IN MEXTCO Daniel G6mez Sânchezl. Socorro GonzâlezElizondo2 IINIFAP Durango. Ap.p. 186 Cp. 34000, Durango, Dgo. Méico 'CIIDIR-COFAA-IPN. Ap.p. 738 C.p. 34000, Durango, Dgo. México. Received: Apil 29. 1994 Accepted: Iuly 11. 1995 SUMMARY The objectives of this study were to determine the geographic and ecological distribu- tion of Helianthus, Vigtiera and Tithonia genera in Mexico in order to preserve their species and utilize them in plant breeding and taxonomic studies. Information from the Mexican herbaria: MEXU, ENCB and CIIDIR were used to localize the areas where wild species of Helianthus, Tithonia and Wguiera grow. Ten species of l1ellanthus,19 of Tithonia and 88 of Viguiera were found. Helianthus has its main distribution surrounding the Sierra Madre Occidental and Sierra Madre Oriental highlands. É1ellanthus annuus has the widest distribu- tion. Tithonia genus is mainly distributed in the highlands with T. nbiformls being the most abundant species in this ecological area. Tithonia genus possibly occupies the ecological area in the highlands hkeHelianthus does in the lowlands.Viguiera has thewidest distribution being found in almost all the Mexican States. Key words: Distribution in Mexico, Helianthus, sunllower, Tithonia, Viguicra, wild species. INTRODUCTION Present-day cultivated sunflower has little genetic variabilily while breeding to im- prove some traits such as drought tolerance, oil and protein quality, disease and pest resistance, requires a larger genetic pool to be successful. Greater genetic diversity exists in wild populations of the genvs Helianthus. (I-aferriére, 1986; Skorié and Vannozzi, 1984). -
Checklist of the Vascular Plants of San Diego County 5Th Edition
cHeckliSt of tHe vaScUlaR PlaNtS of SaN DieGo coUNty 5th edition Pinus torreyana subsp. torreyana Downingia concolor var. brevior Thermopsis californica var. semota Pogogyne abramsii Hulsea californica Cylindropuntia fosbergii Dudleya brevifolia Chorizanthe orcuttiana Astragalus deanei by Jon P. Rebman and Michael G. Simpson San Diego Natural History Museum and San Diego State University examples of checklist taxa: SPecieS SPecieS iNfRaSPecieS iNfRaSPecieS NaMe aUtHoR RaNk & NaMe aUtHoR Eriodictyon trichocalyx A. Heller var. lanatum (Brand) Jepson {SD 135251} [E. t. subsp. l. (Brand) Munz] Hairy yerba Santa SyNoNyM SyMBol foR NoN-NATIVE, NATURaliZeD PlaNt *Erodium cicutarium (L.) Aiton {SD 122398} red-Stem Filaree/StorkSbill HeRBaRiUM SPeciMeN coMMoN DocUMeNTATION NaMe SyMBol foR PlaNt Not liSteD iN THE JEPSON MANUAL †Rhus aromatica Aiton var. simplicifolia (Greene) Conquist {SD 118139} Single-leaF SkunkbruSH SyMBol foR StRict eNDeMic TO SaN DieGo coUNty §§Dudleya brevifolia (Moran) Moran {SD 130030} SHort-leaF dudleya [D. blochmaniae (Eastw.) Moran subsp. brevifolia Moran] 1B.1 S1.1 G2t1 ce SyMBol foR NeaR eNDeMic TO SaN DieGo coUNty §Nolina interrata Gentry {SD 79876} deHeSa nolina 1B.1 S2 G2 ce eNviRoNMeNTAL liStiNG SyMBol foR MiSiDeNtifieD PlaNt, Not occURRiNG iN coUNty (Note: this symbol used in appendix 1 only.) ?Cirsium brevistylum Cronq. indian tHiStle i checklist of the vascular plants of san Diego county 5th edition by Jon p. rebman and Michael g. simpson san Diego natural history Museum and san Diego state university publication of: san Diego natural history Museum san Diego, california ii Copyright © 2014 by Jon P. Rebman and Michael G. Simpson Fifth edition 2014. isBn 0-918969-08-5 Copyright © 2006 by Jon P. -
UC Riverside UC Riverside Electronic Theses and Dissertations
UC Riverside UC Riverside Electronic Theses and Dissertations Title Correlates of Plant Biodiversity in Mediterranean Baja California, Mexico. Permalink https://escholarship.org/uc/item/3qd3x9t8 Author Vanderplank, Sula Elizabeth Publication Date 2013 Peer reviewed|Thesis/dissertation eScholarship.org Powered by the California Digital Library University of California UNIVERSITY OF CALIFORNIA RIVERSIDE Correlates of Plant Biodiversity in Mediterranean Baja California, Mexico. A Dissertation submitted in partial satisfaction of the requirements for the degree of Doctor of Philosophy in Plant Biology by Sula Vanderplank August 2013 Dissertation Committee: Dr. Exequiel Ezcurra, Chairperson Dr. Norman Ellstrand Dr. Richard Minnich Copyright by Sula Vanderplank 2013 The Dissertation of Sula Vanderplank is approved: Committee Chairperson University of California, Riverside Acknowledgements First and foremost I acknowledge my advisor, Exequiel Ezcurra, for his patience, kindness and excellence in mentoring. Similarly Richard Minnich and Norman Ellstrand of my committee have both been highly supportive and academically nurturing and I am most grateful. I remain indebted to my long-term mentors Lucinda McDade and Richard Felger for their ongoing support; and for academic counsel throughout the last three years I sincerely thank the following individuals who have contributed importantly to my academic formation: Jon Rebman, Naomi Fraga, Alan Harper, Bart O’Brien, Steve Junak, Jose Delgadillo, Hugo Riemann, Tom Oberbauer and Phil Rundel. For archeological and malacological information I am grateful to Tom Demare, Jerry Moore, Margaret Conkey, Hans Bertsch, Carlos Figueroa, Enah Fonsecca and Matthew Des Lauriers. I am grateful to my lab-mates Benjamin Wilder, Alejandra Martinez and Andrew Semotiuk who have been my friends and colleagues. -
Genomic Variation in Helianthus: Learning from the Past and Looking to the Future Michael B
BRIEFINGS IN FUNCTIONAL GENOMICS. VOL 13. NO 4. 328 ^340 doi:10.1093/bfgp/elu004 Genomic variation in Helianthus: learning from the past and looking to the future Michael B. Kantar, Gregory J. Baute, Dan G. Bock and Loren H. Rieseberg Advance Access publication date 3 March 2014 Abstract Helianthus is an economically important and genetically diverse genus, containing both evolutionary model species and cultivated species. Genetic variation within this genus has been examined at many different scales, from genome size changes to chromosomal structure to nucleotide variation. The growing amount of genomic resources within the genus has yielded insights into the importance of paleopolyploid events, and how transposable elements can cause rapid genome size increases. The rapidly evolving chromosomes in Helianthus have provided a system whereby it has been possible to study how chromosomal rearrangements impact speciation, adaptation and intro- gression. Population and quantitative genetic studies have used the abundant nucleotide variation to identify a number of candidate genes which may be involved in both local adaptation and domestication. The results from these investigations have provided basic knowledge about evolution and how to utilize genetic resources for both agriculture and conservation. Targeting Helianthus for further study as new technologies emerge will allow for a better understanding of how different types of genomic variation interact and contribute to phenotypic variation in a complex system that is ecologically and economically significant. Keywords: transposableelements;karyotype;nucleotidevariation;hybridization;speciation INTRODUCTION karyotyping methods and high-throughput DNA Genetic variation is the raw material that natural and sequencing, it is now possible to assess genome- artificial selection acts on.