Chapter 1 Wild Plant Genetic Resources in North America
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
"National List of Vascular Plant Species That Occur in Wetlands: 1996 National Summary."
Intro 1996 National List of Vascular Plant Species That Occur in Wetlands The Fish and Wildlife Service has prepared a National List of Vascular Plant Species That Occur in Wetlands: 1996 National Summary (1996 National List). The 1996 National List is a draft revision of the National List of Plant Species That Occur in Wetlands: 1988 National Summary (Reed 1988) (1988 National List). The 1996 National List is provided to encourage additional public review and comments on the draft regional wetland indicator assignments. The 1996 National List reflects a significant amount of new information that has become available since 1988 on the wetland affinity of vascular plants. This new information has resulted from the extensive use of the 1988 National List in the field by individuals involved in wetland and other resource inventories, wetland identification and delineation, and wetland research. Interim Regional Interagency Review Panel (Regional Panel) changes in indicator status as well as additions and deletions to the 1988 National List were documented in Regional supplements. The National List was originally developed as an appendix to the Classification of Wetlands and Deepwater Habitats of the United States (Cowardin et al.1979) to aid in the consistent application of this classification system for wetlands in the field.. The 1996 National List also was developed to aid in determining the presence of hydrophytic vegetation in the Clean Water Act Section 404 wetland regulatory program and in the implementation of the swampbuster provisions of the Food Security Act. While not required by law or regulation, the Fish and Wildlife Service is making the 1996 National List available for review and comment. -
Genome-Wide Identification of NBS-Encoding Resistance
G C A T T A C G G C A T genes Article Genome-Wide Identification of NBS-Encoding Resistance Genes in Sunflower (Helianthus annuus L.) Surendra Neupane ID , Ethan J. Andersen, Achal Neupane ID and Madhav P. Nepal * ID Department of Biology and Microbiology, South Dakota State University, Brookings, SD 57007, USA; [email protected] (S.N.); [email protected] (E.J.A.); [email protected] (A.N.) * Correspondence: [email protected]; Tel.: +1-605-688-5971 Received: 31 May 2018; Accepted: 20 July 2018; Published: 30 July 2018 Abstract: Nucleotide Binding Site—Leucine-Rich Repeat (NBS-LRR) genes encode disease resistance proteins involved in plants’ defense against their pathogens. Although sunflower is affected by many diseases, only a few molecular details have been uncovered regarding pathogenesis and resistance mechanisms. Recent availability of sunflower whole genome sequences in publicly accessible databases allowed us to accomplish a genome-wide identification of Toll-interleukin-1 receptor-like Nucleotide-binding site Leucine-rich repeat (TNL), Coiled Coil (CC)-NBS-LRR (CNL), Resistance to powdery mildew8 (RPW8)-NBS-LRR (RNL) and NBS-LRR (NL) protein encoding genes. Hidden Markov Model (HMM) profiling of 52,243 putative protein sequences from sunflower resulted in 352 NBS-encoding genes, among which 100 genes belong to CNL group including 64 genes with RX_CC like domain, 77 to TNL, 13 to RNL, and 162 belong to NL group. We also identified signal peptides and nuclear localization signals present in the identified genes and their homologs. We found that NBS genes were located on all chromosomes and formed 75 gene clusters, one-third of which were located on chromosome 13. -
(Prunus Spp) Using Random Amplified Microsatellite Polymorphism Markers
Assessment of genetic diversity and relationships among wild and cultivated Tunisian plums (Prunus spp) using random amplified microsatellite polymorphism markers H. Ben Tamarzizt, S. Ben Mustapha, G. Baraket, D. Abdallah and A. Salhi-Hannachi Laboratory of Molecular Genetics, Immunology & Biotechnology, Faculty of Sciences of Tunis, University of Tunis El Manar, El Manar, Tunis, Tunisia Corresponding author: A. Salhi-Hannachi E-mail: [email protected] Genet. Mol. Res. 14 (1): 1942-1956 (2015) Received January 8, 2014 Accepted July 8, 2014 Published March 20, 2015 DOI http://dx.doi.org/10.4238/2015.March.20.4 ABSTRACT. The usefulness of random amplified microsatellite polymorphism markers to study the genetic diversity and relationships among cultivars belonging to Prunus salicina and P. domestica and their wild relatives (P. insititia and P. spinosa) was investigated. A total of 226 of 234 bands were polymorphic (96.58%). The 226 random amplified microsatellite polymorphism markers were screened using 15 random amplified polymorphic DNA and inter-simple sequence repeat primers combinations for 54 Tunisian plum accessions. The percentage of polymorphic bands (96.58%), the resolving power of primers values (135.70), and the polymorphic information content demonstrated the efficiency of the primers used in this study. The genetic distances between accessions ranged from 0.18 to 0.79 with a mean of 0.24, suggesting a high level of genetic diversity at the intra- and interspecific levels. The unweighted pair group with arithmetic mean dendrogram Genetics and Molecular Research 14 (1): 1942-1956 (2015) ©FUNPEC-RP www.funpecrp.com.br Genetic diversity of Tunisian plums using RAMPO markers 1943 and principal component analysis discriminated cultivars efficiently and illustrated relationships and divergence between spontaneous, locally cultivated, and introduced plum types. -
State of New York City's Plants 2018
STATE OF NEW YORK CITY’S PLANTS 2018 Daniel Atha & Brian Boom © 2018 The New York Botanical Garden All rights reserved ISBN 978-0-89327-955-4 Center for Conservation Strategy The New York Botanical Garden 2900 Southern Boulevard Bronx, NY 10458 All photos NYBG staff Citation: Atha, D. and B. Boom. 2018. State of New York City’s Plants 2018. Center for Conservation Strategy. The New York Botanical Garden, Bronx, NY. 132 pp. STATE OF NEW YORK CITY’S PLANTS 2018 4 EXECUTIVE SUMMARY 6 INTRODUCTION 10 DOCUMENTING THE CITY’S PLANTS 10 The Flora of New York City 11 Rare Species 14 Focus on Specific Area 16 Botanical Spectacle: Summer Snow 18 CITIZEN SCIENCE 20 THREATS TO THE CITY’S PLANTS 24 NEW YORK STATE PROHIBITED AND REGULATED INVASIVE SPECIES FOUND IN NEW YORK CITY 26 LOOKING AHEAD 27 CONTRIBUTORS AND ACKNOWLEGMENTS 30 LITERATURE CITED 31 APPENDIX Checklist of the Spontaneous Vascular Plants of New York City 32 Ferns and Fern Allies 35 Gymnosperms 36 Nymphaeales and Magnoliids 37 Monocots 67 Dicots 3 EXECUTIVE SUMMARY This report, State of New York City’s Plants 2018, is the first rankings of rare, threatened, endangered, and extinct species of what is envisioned by the Center for Conservation Strategy known from New York City, and based on this compilation of The New York Botanical Garden as annual updates thirteen percent of the City’s flora is imperiled or extinct in New summarizing the status of the spontaneous plant species of the York City. five boroughs of New York City. This year’s report deals with the City’s vascular plants (ferns and fern allies, gymnosperms, We have begun the process of assessing conservation status and flowering plants), but in the future it is planned to phase in at the local level for all species. -
Checklist of Illinois Native Trees
Technical Forestry Bulletin · NRES-102 Checklist of Illinois Native Trees Jay C. Hayek, Extension Forestry Specialist Department of Natural Resources & Environmental Sciences Updated May 2019 This Technical Forestry Bulletin serves as a checklist of Tree species prevalence (Table 2), or commonness, and Illinois native trees, both angiosperms (hardwoods) and gym- county distribution generally follows Iverson et al. (1989) and nosperms (conifers). Nearly every species listed in the fol- Mohlenbrock (2002). Additional sources of data with respect lowing tables† attains tree-sized stature, which is generally to species prevalence and county distribution include Mohlen- defined as having a(i) single stem with a trunk diameter brock and Ladd (1978), INHS (2011), and USDA’s The Plant Da- greater than or equal to 3 inches, measured at 4.5 feet above tabase (2012). ground level, (ii) well-defined crown of foliage, and(iii) total vertical height greater than or equal to 13 feet (Little 1979). Table 2. Species prevalence (Source: Iverson et al. 1989). Based on currently accepted nomenclature and excluding most minor varieties and all nothospecies, or hybrids, there Common — widely distributed with high abundance. are approximately 184± known native trees and tree-sized Occasional — common in localized patches. shrubs found in Illinois (Table 1). Uncommon — localized distribution or sparse. Rare — rarely found and sparse. Nomenclature used throughout this bulletin follows the Integrated Taxonomic Information System —the ITIS data- Basic highlights of this tree checklist include the listing of 29 base utilizes real-time access to the most current and accept- native hawthorns (Crataegus), 21 native oaks (Quercus), 11 ed taxonomy based on scientific consensus. -
Wild Helianthus Anomalus and H. Deserticola from the Desert Southwest USA: a Potential Source of Stress Genes for Cultivated Sunflower
Wild Helianthus anomalus and H. deserticola from the Desert Southwest USA: a Potential Source of Stress Genes for Cultivated Sunflower Gerald J. Seiler U.S. Department of Agriculture, Agricultural Research Service, Northern Crop Science Laboratory, Fargo, North Dakota USA 58105 www.fargo.ars.usda.gov Email [email protected] Abstract The narrow genetic base of cultivated sunflower has been broadened by the infusion of genes from wild species, which continue to be a valuable source of desirable agronomic traits. Helianthus anomalus Blake is a wild annual species adapted to sandy dunes of the southwest USA. Helianthus deserticola Heiser is another wild annual species adapted to high desert areas of the same region. The adaptation of these species to harsh habitats makes them potential candidates for improving stress tolerance in the cultivated sunflower crop. Since seed of these species was not available in the USDA-ARS Sunflower Germplasm Collection, an exploration was undertaken in September, 2000 to collect populations for future research. Due to the extremely dry weather in 2000, only two populations of H. anomalus and one H. deserticola were collected. These collections are the first populations of these species added to the sunflower collection in over 20 years. Future research calls for introgression of the wild species into cultivated sunflower and evaluating the progeny for ecophysiological characteristics. Media summary Wild annual sunflowers from the southwestern deserts of the USA have the potential to improve stress tolerance in cultivated sunflower. Key Words Exploration, drought, ecophysiological, germplasm, genetic diversity. Introduction The genus Helianthus is comprised of 51 species with 14 annual and 37 perennial, all native to North America. -
Southwestern Rare and Endangered Plants
The Importance of Competition in the Isolation and Establishment of Helianthus Paradoxus (Asteraceae) 1 OSCAR W. VAN AUKEN AND JANIS. K. BUSH Department of Earth and Environmental Sciences, University of Texas at San Antonio, San Antonio, TX 78249 1Author for correspondence and reprints. FAX 210-458-5658; E-mail [email protected] ABSTRACT: Helianthus paradoxus (the Pecos or puzzle sunflower) is a threatened, federally listed annual species that is found in a few locations in west Texas and New Mexico. Two greenhouse experiments were conducted to evaluate the ability of H. paradoxus to compete with its progenitors and a with potential ecosystem competitor, Distichlis spicata (saltgrass) in simulated salt marsh and non-salt marsh environments. The results were usually dependent on soil salinity. Helianthus paradoxus was the better competitor in high saline soil and its progenitor H. annuus (common sunflower) was the better competitor in low saline soil. However, H. paradoxus was the better competitor in both high and low saline soils when compared to it progenitor H. petiolaris (plains sunflower) and to D. spicata, an ecosystem competitor. The ability of H. paradoxus to tolerate higher saline conditions, and perhaps even restrict the more geographically widespread H. annuus in saline soils may have allowed H. paradoxus to establish, become genetically isolated and survive as a species in inland salt marshes. Data presented here indicate that while H. paradoxus can grow in low saline soil, interference from H. annuus in low saline soils could restrict H. paradoxus to saline environments within salt marshes. The ability of H. paradoxus to out-compete D. -
Literature Cited
Literature Cited Robert W. Kiger, Editor This is a consolidated list of all works cited in volumes 19, 20, and 21, whether as selected references, in text, or in nomenclatural contexts. In citations of articles, both here and in the taxonomic treatments, and also in nomenclatural citations, the titles of serials are rendered in the forms recommended in G. D. R. Bridson and E. R. Smith (1991). When those forms are abbre- viated, as most are, cross references to the corresponding full serial titles are interpolated here alphabetically by abbreviated form. In nomenclatural citations (only), book titles are rendered in the abbreviated forms recommended in F. A. Stafleu and R. S. Cowan (1976–1988) and F. A. Stafleu and E. A. Mennega (1992+). Here, those abbreviated forms are indicated parenthetically following the full citations of the corresponding works, and cross references to the full citations are interpolated in the list alphabetically by abbreviated form. Two or more works published in the same year by the same author or group of coauthors will be distinguished uniquely and consistently throughout all volumes of Flora of North America by lower-case letters (b, c, d, ...) suffixed to the date for the second and subsequent works in the set. The suffixes are assigned in order of editorial encounter and do not reflect chronological sequence of publication. The first work by any particular author or group from any given year carries the implicit date suffix “a”; thus, the sequence of explicit suffixes begins with “b”. Works missing from any suffixed sequence here are ones cited elsewhere in the Flora that are not pertinent in these volumes. -
BOTANY SECTION Compiled by Richard E. Weaver, Jr., Ph.D., and Patti J
TRI-OLOGY, Vol. 47, No. 5 Patti J. Anderson, Ph.D., Managing Editor SEPTEMBER-OCTOBER 2008 DACS-P-00124 Wayne N. Dixon, Ph. D., Editor Page 1 of 13 BOTANY SECTION Compiled by Richard E. Weaver, Jr., Ph.D., and Patti J. Anderson, Ph.D. For this period, 167 specimens were submitted to the Botany Section for identification, and 1,418 were received from other sections for identification/name verification for a total of 1,585. In addition, 57 specimens were added to the herbarium, and 48 specimens of invasive species were prepared for the Division of Forestry’s Forest Health Project. Some of the samples received for identification are discussed below: Helianthus simulans E. E. Wats. (an endemic North American genus of 49 species, occurring throughout the United States and adjacent Canada, as well as in Baja California). Compositae (Asteraceae). Muck sunflower. It is unfortunate that such an attractive plant has such an unattractive common name. Growing to more than 2 m tall, this sunflower makes a showy and impressive specimen in the garden. In its best forms, the lanceolate leaves are leathery and dark green, somewhat reminiscent of those of the oleander (Nerium oleander). The flower heads, with bright yellow rays and usually a reddish- purple disk, are borne in profusion in October and November and vary from 7-10 cm across. Although it grows at least twice as tall and the leaves are broader and not revolute (turned under along the margins), it is often confused with the very common Helianthus simulans Photograph courtesy of Sally Wasowski and swamp sunflower (H. -
Characterization of CYP71AX36 from Sunflower (Helianthus Annuus L., Asteraceae)
www.nature.com/scientificreports OPEN Characterization of CYP71AX36 from Sunfower (Helianthus annuus L., Asteraceae) Received: 23 April 2019 Maximilian Frey 1, Iris Klaiber2, Jürgen Conrad3, Aylin Bersch1, Irini Pateraki 4, Accepted: 10 September 2019 Dae-Kyun Ro5 & Otmar Spring1 Published: xx xx xxxx Sesquiterpene lactones (STL) are a subclass of isoprenoids with many known bioactivities frequently found in the Asteraceae family. In recent years, remarkable progress has been made regarding the biochemistry of STL, and today the biosynthetic pathway of the core backbones of many STLs has been elucidated. Consequently, the focus has shifted to the discovery of the decorating enzymes that can modify the core skeleton with functional hydroxy groups. Using in vivo pathway reconstruction assays in heterologous organisms such as Saccharomyces cerevisiae and Nicotiana benthamiana, we have analyzed several cytochrome P450 enzyme genes of the CYP71AX subfamily from Helianthus annuus clustered in close proximity to one another on the sunfower genome. We show that one member of this subfamily, CYP71AX36, can catalyze the conversion of costunolide to 14-hydroxycostunolide. The catalytic activity of CYP71AX36 may be of use for the chemoenzymatic production of antileukemic 14-hydroxycostunolide derivatives and other STLs of pharmaceutical interest. We also describe the full 2D-NMR assignment of 14-hydroxycostunolide and provide all 13C chemical shifts of the carbon skeleton for the frst time. Sesquiterpene lactones (STL) are a diverse group of specialized plant metabolites, particularly characteristic to the Asteraceae family, which contain a C15 backbone and an α-methylene γ-lactone ring1. Recently, the enzy- matic steps leading to the basic 6,7-cis and 7,8-trans STL structures, such as costunolide (1) and inunolide, have been described. -
Missouriensis Volume 28 / 29
Missouriensis Volume 28/29 (2008) In this issue: Improved Status of Auriculate False Foxglove (Agalinis auriculata) in Missouri in 2007 Tim E. Smith, Tom Nagel, and Bruce Schuette ......................... 1 Current Status of Yellow False Mallow (Malvastrum hispidum) in Missouri Tim E. Smith.................................................................................... 5 Heliotropium europaeum (Heliotropiaceae) New to Missouri Jay A. Raveill and George Yatskievych ..................................... 10 Melica mutica (Poaceae) New for the Flora of Missouri Alan E. Brant ................................................................................. 18 Schoenoplectus californicus (Cyperaceae) New to Missouri Timothy E. Vogt and Paul M. McKenzie ................................. 22 Flora of Galloway Creek Nature Park, Howell County, Missouri Bill Summers .................................................................................. 27 Journal of the Missouri Native Plant Society Missouriensis, Volume 28/29 2008 1 IMPROVED STATUS OF AURICULATE FALSE FOXGLOVE (AGALINIS AURICULATA) IN MISSOURI IN 2007 Tim E. Smith Missouri Department of Conservation P.O. Box 180, Jefferson City, MO 65102-0180 Tom Nagel Missouri Department of Conservation 701 James McCarthy Drive St. Joseph, MO 64507-2194 Bruce Schuette Missouri Department of Natural Resources Cuivre River State Park 678 State Rt. 147 Troy, MO 63379 Populations of annual plant species are known to have periodic “boom” and “bust” years as well as years when plant numbers more closely approach long-term averages. In tracking populations of plant species of conservation concern (Missouri Natural Heritage Program, 2007), there are sometimes also boom years in the number of reports of new populations. Because of reports of five new populations and a surge in numbers of plants at some previously-known sites, 2007 provided encouraging news for the conservation of the auriculate false foxglove [Agalinis auriculata (Michx.) Blake] in Missouri. -
Lntrogression and Its Consequences in Plants Loren H
Botany Publication and Papers Botany 1993 lntrogression and Its Consequences in Plants Loren H. Rieseberg Rancho Santa Ana Botanic Garden Jonathan F. Wendel Iowa State University, [email protected] Follow this and additional works at: http://lib.dr.iastate.edu/bot_pubs Part of the Botany Commons, Evolution Commons, and the Plant Breeding and Genetics Commons Recommended Citation Rieseberg, Loren H. and Wendel, Jonathan F., "lntrogression and Its Consequences in Plants" (1993). Botany Publication and Papers. 8. http://lib.dr.iastate.edu/bot_pubs/8 This Book Chapter is brought to you for free and open access by the Botany at Iowa State University Digital Repository. It has been accepted for inclusion in Botany Publication and Papers by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. lntrogression and Its Consequences in Plants Abstract The or le of introgression in plant evolution has been the subject of considerable discussion since the publication of Anderson's influential monograph, Introgressive Hybridization (Anderson, 1949). Anderson promoted the view, since widely held by botanists, that interspecific transfer of genes is a potent evolutionary force. He suggested that "the raw material for evolution brought about by introgression must greatly exceed the new genes produced directly by mutation" ( 1949, p. 102) and reasoned, as have many subsequent authors, that the resulting increases in genetic diversity and number of genetic combinations promote the development or acquisition of novel adaptations (Anderson, 1949, 1953; Stebbins, 1959; Rattenbury, 1962; Lewontin and Birch, 1966; Raven, 1976; Grant, 1981 ). In contrast to this "adaptationist" perspective, others have accorded little ve olutionary significance to introgression, suggesting instead that it should be considered a primarily local phenomenon with only transient effects, a kind of"evolutionary noise" (Barber and Jackson, 1957; Randolph et al., 1967; Wagner, 1969, 1970; Hardin, 1975).