Antibacterial Activities of Daldina Concentrica
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Phylogenetic Assignment of the Fungicolous Hypoxylon Invadens (Ascomycota, Xylariales) and Investigation of Its Secondary Metabolites
microorganisms Article Phylogenetic Assignment of the Fungicolous Hypoxylon invadens (Ascomycota, Xylariales) and Investigation of its Secondary Metabolites Kevin Becker 1,2 , Christopher Lambert 1,2,3 , Jörg Wieschhaus 1 and Marc Stadler 1,2,* 1 Department of Microbial Drugs, Helmholtz Centre for Infection Research GmbH (HZI), Inhoffenstraße 7, 38124 Braunschweig, Germany; [email protected] (K.B.); [email protected] (C.L.); [email protected] (J.W.) 2 German Centre for Infection Research Association (DZIF), Partner site Hannover-Braunschweig, Inhoffenstraße 7, 38124 Braunschweig, Germany 3 Department for Molecular Cell Biology, Helmholtz Centre for Infection Research GmbH (HZI) Inhoffenstraße 7, 38124 Braunschweig, Germany * Correspondence: [email protected]; Tel.: +49-531-6181-4240; Fax: +49-531-6181-9499 Received: 23 July 2020; Accepted: 8 September 2020; Published: 11 September 2020 Abstract: The ascomycete Hypoxylon invadens was described in 2014 as a fungicolous species growing on a member of its own genus, H. fragiforme, which is considered a rare lifestyle in the Hypoxylaceae. This renders H. invadens an interesting target in our efforts to find new bioactive secondary metabolites from members of the Xylariales. So far, only volatile organic compounds have been reported from H. invadens, but no investigation of non-volatile compounds had been conducted. Furthermore, a phylogenetic assignment following recent trends in fungal taxonomy via a multiple sequence alignment seemed practical. A culture of H. invadens was thus subjected to submerged cultivation to investigate the produced secondary metabolites, followed by isolation via preparative chromatography and subsequent structure elucidation by means of nuclear magnetic resonance (NMR) spectroscopy and high-resolution mass spectrometry (HR-MS). -
Savoryellales (Hypocreomycetidae, Sordariomycetes): a Novel Lineage
Mycologia, 103(6), 2011, pp. 1351–1371. DOI: 10.3852/11-102 # 2011 by The Mycological Society of America, Lawrence, KS 66044-8897 Savoryellales (Hypocreomycetidae, Sordariomycetes): a novel lineage of aquatic ascomycetes inferred from multiple-gene phylogenies of the genera Ascotaiwania, Ascothailandia, and Savoryella Nattawut Boonyuen1 Canalisporium) formed a new lineage that has Mycology Laboratory (BMYC), Bioresources Technology invaded both marine and freshwater habitats, indi- Unit (BTU), National Center for Genetic Engineering cating that these genera share a common ancestor and Biotechnology (BIOTEC), 113 Thailand Science and are closely related. Because they show no clear Park, Phaholyothin Road, Khlong 1, Khlong Luang, Pathumthani 12120, Thailand, and Department of relationship with any named order we erect a new Plant Pathology, Faculty of Agriculture, Kasetsart order Savoryellales in the subclass Hypocreomyceti- University, 50 Phaholyothin Road, Chatuchak, dae, Sordariomycetes. The genera Savoryella and Bangkok 10900, Thailand Ascothailandia are monophyletic, while the position Charuwan Chuaseeharonnachai of Ascotaiwania is unresolved. All three genera are Satinee Suetrong phylogenetically related and form a distinct clade Veera Sri-indrasutdhi similar to the unclassified group of marine ascomy- Somsak Sivichai cetes comprising the genera Swampomyces, Torpedos- E.B. Gareth Jones pora and Juncigera (TBM clade: Torpedospora/Bertia/ Mycology Laboratory (BMYC), Bioresources Technology Melanospora) in the Hypocreomycetidae incertae -
UC Riverside UC Riverside Previously Published Works
UC Riverside UC Riverside Previously Published Works Title Contributions of North American endophytes to the phylogeny, ecology, and taxonomy of Xylariaceae (Sordariomycetes, Ascomycota). Permalink https://escholarship.org/uc/item/3fm155t1 Authors U'Ren, Jana M Miadlikowska, Jolanta Zimmerman, Naupaka B et al. Publication Date 2016-05-01 DOI 10.1016/j.ympev.2016.02.010 License https://creativecommons.org/licenses/by-nc-nd/4.0/ 4.0 Peer reviewed eScholarship.org Powered by the California Digital Library University of California *Graphical Abstract (for review) ! *Highlights (for review) • Endophytes illuminate Xylariaceae circumscription and phylogenetic structure. • Endophytes occur in lineages previously not known for endophytism. • Boreal and temperate lichens and non-flowering plants commonly host Xylariaceae. • Many have endophytic and saprotrophic life stages and are widespread generalists. *Manuscript Click here to view linked References 1 Contributions of North American endophytes to the phylogeny, 2 ecology, and taxonomy of Xylariaceae (Sordariomycetes, 3 Ascomycota) 4 5 6 Jana M. U’Ren a,* Jolanta Miadlikowska b, Naupaka B. Zimmerman a, François Lutzoni b, Jason 7 E. Stajichc, and A. Elizabeth Arnold a,d 8 9 10 a University of Arizona, School of Plant Sciences, 1140 E. South Campus Dr., Forbes 303, 11 Tucson, AZ 85721, USA 12 b Duke University, Department of Biology, Durham, NC 27708-0338, USA 13 c University of California-Riverside, Department of Plant Pathology and Microbiology and Institute 14 for Integrated Genome Biology, 900 University Ave., Riverside, CA 92521, USA 15 d University of Arizona, Department of Ecology and Evolutionary Biology, 1041 E. Lowell St., 16 BioSciences West 310, Tucson, AZ 85721, USA 17 18 19 20 21 22 23 24 * Corresponding author: University of Arizona, School of Plant Sciences, 1140 E. -
Brandsvampbaggen Biphyllus Lunatus På Gotland
Brandsvampbaggen Biphyllus lunatus på Gotland Rapporter om natur och miljö – nr 2007: 7 Brandsvampbaggen Biphyllus lunatus på Gotland — en hotad art beroende av brända björkar LARS-OVE WIKARS & JONAS SANDSTRÖM Omslagsbild: Brandsvampbagge. Foto Lars-Ove Wikars. ISSN 1653-7041 LÄNSSTYRELSEN I GOTLANDS LÄN – VISBY 2007 1 2 Sammanfattning Brandsvampbaggen är en brandberoende skalbagge som idag bara återfinns på Gotland efter att redan under 1800-talet ha dött ut på fastlandet. Den utvecklas i fruktkroppar av svampen brandskiktdyna som enbart växer på brandskadade lövträd, främst björk. Orsaken till att den fortfarande finns på Gotland antas vara den unika skötseln av ängen, då ris och grenar traditionsenligt bränns på våren. Vi sökte efter arten på tretton brandfält och fyra ängen på främst norra och centrala Gotland. Vi hittade arten på ett enda brandfält skapat genom skjutövningar på Tofta skjutfält söder om Visby. Tofta skjutfält är idag sannolikt det område på Gotland som har bäst förutsättningar att hysa brandsvampbagge. Aktiv naturvårdsbränning kan dock snart behövas eftersom skjutfältsaktiviteten kan komma att upphöra i en nära framtid. Få av de undersökta brandfälten erbjöd lämpliga miljöer för brandsvampbagge. Generellt skapar spontana bränder ytterst sällan lämplig miljö för brandsvampbagge. Bränderna berör sällan trädbevuxna områden, särskilt sådana med ett innehåll av lövträd. Dessutom är bränderna av liten areal och har normalt en så låg intensitet att träd ej dödas. Den skogstyp som brinner mest frekvent och med störst intensitet på Gotland är torr tallskog, som normalt saknar ett större inslag av björk och andra lövträd. De största naturvärdena på brandfälten är ofta knutna till branddödade tallar. Ängena saknar idag troligen betydelse för brandsvampbaggen pga. -
Recent Progress in Biodiversity Research on the Xylariales and Their Secondary Metabolism
The Journal of Antibiotics (2021) 74:1–23 https://doi.org/10.1038/s41429-020-00376-0 SPECIAL FEATURE: REVIEW ARTICLE Recent progress in biodiversity research on the Xylariales and their secondary metabolism 1,2 1,2 Kevin Becker ● Marc Stadler Received: 22 July 2020 / Revised: 16 September 2020 / Accepted: 19 September 2020 / Published online: 23 October 2020 © The Author(s) 2020. This article is published with open access Abstract The families Xylariaceae and Hypoxylaceae (Xylariales, Ascomycota) represent one of the most prolific lineages of secondary metabolite producers. Like many other fungal taxa, they exhibit their highest diversity in the tropics. The stromata as well as the mycelial cultures of these fungi (the latter of which are frequently being isolated as endophytes of seed plants) have given rise to the discovery of many unprecedented secondary metabolites. Some of those served as lead compounds for development of pharmaceuticals and agrochemicals. Recently, the endophytic Xylariales have also come in the focus of biological control, since some of their species show strong antagonistic effects against fungal and other pathogens. New compounds, including volatiles as well as nonvolatiles, are steadily being discovered from these fi 1234567890();,: 1234567890();,: ascomycetes, and polythetic taxonomy now allows for elucidation of the life cycle of the endophytes for the rst time. Moreover, recently high-quality genome sequences of some strains have become available, which facilitates phylogenomic studies as well as the elucidation of the biosynthetic gene clusters (BGC) as a starting point for synthetic biotechnology approaches. In this review, we summarize recent findings, focusing on the publications of the past 3 years. -
Complete References List
Aanen, D. K. & T. W. Kuyper (1999). Intercompatibility tests in the Hebeloma crustuliniforme complex in northwestern Europe. Mycologia 91: 783-795. Aanen, D. K., T. W. Kuyper, T. Boekhout & R. F. Hoekstra (2000). Phylogenetic relationships in the genus Hebeloma based on ITS1 and 2 sequences, with special emphasis on the Hebeloma crustuliniforme complex. Mycologia 92: 269-281. Aanen, D. K. & T. W. Kuyper (2004). A comparison of the application of a biological and phenetic species concept in the Hebeloma crustuliniforme complex within a phylogenetic framework. Persoonia 18: 285-316. Abbott, S. O. & Currah, R. S. (1997). The Helvellaceae: Systematic revision and occurrence in northern and northwestern North America. Mycotaxon 62: 1-125. Abesha, E., G. Caetano-Anollés & K. Høiland (2003). Population genetics and spatial structure of the fairy ring fungus Marasmius oreades in a Norwegian sand dune ecosystem. Mycologia 95: 1021-1031. Abraham, S. P. & A. R. Loeblich III (1995). Gymnopilus palmicola a lignicolous Basidiomycete, growing on the adventitious roots of the palm sabal palmetto in Texas. Principes 39: 84-88. Abrar, S., S. Swapna & M. Krishnappa (2012). Development and morphology of Lysurus cruciatus--an addition to the Indian mycobiota. Mycotaxon 122: 217-282. Accioly, T., R. H. S. F. Cruz, N. M. Assis, N. K. Ishikawa, K. Hosaka, M. P. Martín & I. G. Baseia (2018). Amazonian bird's nest fungi (Basidiomycota): Current knowledge and novelties on Cyathus species. Mycoscience 59: 331-342. Acharya, K., P. Pradhan, N. Chakraborty, A. K. Dutta, S. Saha, S. Sarkar & S. Giri (2010). Two species of Lysurus Fr.: addition to the macrofungi of West Bengal. -
Xylariales, Ascomycota), Designation of an Epitype for the Type Species of Iodosphaeria, I
VOLUME 8 DECEMBER 2021 Fungal Systematics and Evolution PAGES 49–64 doi.org/10.3114/fuse.2021.08.05 Phylogenetic placement of Iodosphaeriaceae (Xylariales, Ascomycota), designation of an epitype for the type species of Iodosphaeria, I. phyllophila, and description of I. foliicola sp. nov. A.N. Miller1*, M. Réblová2 1Illinois Natural History Survey, University of Illinois Urbana-Champaign, Champaign, IL, USA 2Czech Academy of Sciences, Institute of Botany, 252 43 Průhonice, Czech Republic *Corresponding author: [email protected] Key words: Abstract: The Iodosphaeriaceae is represented by the single genus, Iodosphaeria, which is composed of nine species with 1 new taxon superficial, black, globose ascomata covered with long, flexuous, brown hairs projecting from the ascomata in a stellate epitypification fashion, unitunicate asci with an amyloid apical ring or ring lacking and ellipsoidal, ellipsoidal-fusiform or allantoid, hyaline, phylogeny aseptate ascospores. Members of Iodosphaeria are infrequently found worldwide as saprobes on various hosts and a wide systematics range of substrates. Only three species have been sequenced and included in phylogenetic analyses, but the type species, taxonomy I. phyllophila, lacks sequence data. In order to stabilize the placement of the genus and family, an epitype for the type species was designated after obtaining ITS sequence data and conducting maximum likelihood and Bayesian phylogenetic analyses. Iodosphaeria foliicola occurring on overwintered Alnus sp. leaves is described as new. Five species in the genus form a well-supported monophyletic group, sister to thePseudosporidesmiaceae in the Xylariales. Selenosporella-like and/or ceratosporium-like synasexual morphs were experimentally verified or found associated with ascomata of seven of the nine accepted species in the genus. -
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Identification and control of fungal contamination in ancient heritage documents Nuno Miguel da Costa Pinheiro Meneses Mesquita Setembro 2013 Dissertação apresentada à Universidade de Coimbra para a obtenção do grau de Doutor em Biologia, especialidade em Biologia Molecular, realizada sob a orientação científica do Professor Doutor António Manuel Santos Carriço Portugal e co-orientação da Professora Doutora Helena Maria de Oliveira Freitas do Departamento de Ciências da Vida da Faculdade de Ciências e Tecnologia da Universidade de Coimbra. This research was funded by Fundação para a Ciência e a Tecnologia (FCT) and the European Social Fund through the Programa Operacional Potencial Humano (POPH) of the National Strategic Reference Network, with the reference SFRH/BD/41287/2007. This work was also funded by Fundo Europeu de Desenvolvimento Regional (FEDER) through the Programa Operacional Fatores de Competitividade (POFC-COMPETE) and national funds, through FCT under the project with the reference PTDC/HAH/65262/2006. Acknowledgements To Fundação para a Ciência e a Tecnologia for sponsoring this work with a PhD grant (SFRH/BD/41287/2007). To my supervisor, Professor António Portugal, for his trust in having me as a PhD student; for his friendship, advice and utmost support in so many different matters. To Professor Helena Freitas, my co-supervisor, for the open-minded ideas and advice. To the Centre for Functional Ecology of the University of Coimbra, for allowing me to perform and develop my thesis. To Professor Teresa Gonçalves, for all the interesting conversations and support. To João Loureiro for his support and advice during the flow cytometry experiences. To my lab partners, in alphabetical order (to prevent malicious sample contaminations in the future): Diana, Elisa, Gabriela, Helena, Hugo, John, Sandra, Susana and Trovão. -
Biodiversity and Bioactivity of Stromatic Xylariales Collected from Mu Ko Chang National Park, Thailand
Sutjaritvorakul – Chutipaijit: Biodiversity and bioactivity of stromatic Xylariales collected from Ko Chang Island, Mu Ko Chang National Park, Thailand - 8309 - BIODIVERSITY AND BIOACTIVITY OF STROMATIC XYLARIALES COLLECTED FROM MU KO CHANG NATIONAL PARK, THAILAND SUTJARITVORAKUL, T.1 – CHUTIPAIJIT, S.2* 1Faculty of Science and Technology, Pathumwan Institute of Technology, Bangkok 10330, Thailand 2College of Nanotechnology, King Mongkut’s Institute of Technology Ladkrabang, Bangkok 10520, Thailand *Corresponding author e-mail: [email protected] (Received 13th Aug 2020; accepted 19th Nov 2020) Abstract. Ko Chang Island is a tropical rain forest island of Mu Ko Chang national park, Thailand, which has a wide variety of macro-fungi. The objective of this research was to study the biodiversity of Xylariales and to investigate the bioactive activity of ethyl acetate crude extracts. The fungi were collected from the forest area of the waterfalls all over the island. The crude extracts of selected fungi were tested for antibacterial activity by agar well diffusion method and the cancer cell viability was assessed using the MTT assay. Three genera of Xylariaceae and Hypoxylaceae were found including Xylaria, Daldinia and Hypoxylon. The crude extracts inhibited the growth of Gram positive bacteria more than that of Gram negative bacteria and showed broad spectrum inhibition to all cancer cell lines. The crude extract of Xylaria sp.3 showed the highest potential of antibacterial activity and selectively inhibited gastric carcinoma (Kato III) and T cell leukemia (Jurket) with the percentage survival of 26.12 ± 0.90% and 35.37 ± 0.40% respectively. The molecular identification of Xylaria sp.3 was identified as Xylaria sp.TP5BS101. -
Biogeographical Patterns in Pyrenomycetous Fungi and Their Taxonomy
ISSN (print) 0093-4666 © 2011. Mycotaxon, Ltd. ISSN (online) 2154-8889 MYCOTAXON http://dx.doi.org/10.5248/117.331 Volume 117, pp. 331–342 July–September 2011 Biogeographical patterns in pyrenomycetous fungi and their taxonomy. 2. Additions to the Grayan disjunction Larissa N. Vasilyeva1* & Steven L. Stephenson2 1Institute of Biology & Soil Science, Far East Branch of the Russian Academy of Sciences, Vladivostok 690022, Russia 2Department of Biological Sciences, University of Arkansas, Fayetteville, AR 72701, USA *Correspondence to: [email protected] Abstract — We report additional examples of pyrenomycetous fungi that display the biogeographical pattern known as the Grayan disjunction. Daldinia grayana and Diatrypella informis are described as new species, and Nemania pseudoillita is proposed as a new combination. Key words — Ascomycota, biogeography, new species Introduction Additional collecting trips and visits to several different herbaria have revealed a number of specimens that warranted a re-identification. The data available on their distribution indicate that they display the biogeographical pattern known as the Grayan disjunction, which was discussed in a previous paper (Vasilyeva & Stephenson 2010). Two types of this distribution pattern have been observed in pyrenomycetous fungi—vicariance and non-vicariance. In addition, there are two other groups of fungi restricted to either eastern Asia or eastern North America that do not have close relatives in the other region. Although these two groups of species are seemingly pertinent to the two regions under consideration, the biogeographical patterns they exhibit have different explanations, which will be considered in a forthcoming paper. The purpose of the present paper is to provide additional information relating to the Grayan disjunction in pyrenomycetes and to discuss certain aspects of this pattern. -
Ecology of Dazdinia Spp. with Special Emphasis on Daldinia Zoculata
Ecology of DaZdinia spp. with Special Emphasis on Daldinia Zoculata Hanna Johannesson Department of Forest Mycology and Pathology Uppsala Doctoral thesis Swedish University of Agricultural Sciences Uppsala 2000 Acta Universitatis Agriculturae Sueciae Silvestria 168 ISSN 1401-6230 ISBN 91-576-6052-2 0 2000 Hanna Johannesson, Uppsala Tryck: SLU Service/Repro, Uppsala 2000 Abstract Johannesson, H. 2000. Ecology of Daldinia spp. with special emphasis on Daldinia loculata. Doctor’s dissertation. ISSN 1401-6230, ISBN 91-576-6052-2 This thesis comprises studies on the xerophytic ascomycete genus Daldinia. By studying ecological, morphological and molecular characters of herbarium specimens, five distinct Daldinia species were identified from northern Europe: D. concentrica, D. fissa, D. grandis, D. loculata and D. petriniae. The last two mentioned have previously been referred to as D. concentrica in the literature. The distinct stromatal host-specificity of the three species: D. concentrica, D. loculata and D. petriniae was studied in an inoculation experiment. The results indicate that the observed substrate-specificity is not a result of enhanced wood-decaying capability in the substrate on which stromata are usually found. Reproducible PCR-based molecular markers were developed for the postfire species D. loculata by using available sequence data of nuclear genes from species closely related to D. loculata. Each marker spans over one or several introns and showed relatively high intraspecific variability. The genetic variation of D. loculata was studied both within and among forest sites. In a local population structure study of D. loculata in burned birches, we found that it can establish endophytically in sound-looking wood of living trees, most probably by sexual ascospores. -
Germplasm of Xylariales Fungal Diversity of Gujarat, India
Available online at www.worldscientificnews.com WSN 66 (2017) 43-55 EISSN 2392-2192 Germplasm of xylariales fungal diversity of Gujarat, India Praveen Kumar Nagadesi1,*, Arun Arya2 1Department of Botany, P.G. Section, Andhra Loyola College, Vijayawada - 520008, Andhra Pradesh, India 2Department of Botany, Faculty of Science, The Maharaja Sayajirao University of Baroda, Vadodara - 390002, Gujarat, India *E-mail address: [email protected] ABSTRACT The present paper deals with the eleven species germplasm of Xylariales collected from forest of Gujarat, India. An intensive survey in Gujarat was carried out from 2007–2015. From the total collection 11 xylariaceous fungi were identified in which six belong to daldinia four belong to xylaria and one belong to hypoxylon of Xylariaceae. Daldinia bambusicola Y.-M. Ju, J. D. Rogers, & San Martín, Daldinia loculata (Lév.) Sacc., Daldinia petriniae Y.-M. Ju, J. D. Rogers, & San Martín, are new records to Gujarat. Although some of these species have been previously recorded, present collections showed remarkable morphological differences to the previously described ones. Keywords: Germplasm, Xylariales, Fungal Diversity, Gujarat, Daldinia 1. INTRODUCTION Although conservative estimate of fungal species worldwide ranges from 1.5 to 5.1 million, currently accepted number of fungi ranges between 0.5 and 3 million [1,2]. According to The Dictionary of the Fungi and Index of Fungi, from 1943 and 2008, on an average 950 species in 73 genera of fungi have been introduced. The number of ascomycetes World Scientific News 66 (2017) 43-55 as a percentage of known fungi has almost doubled during this period [3]. India is one of the mega biodiversity countries in the tropics with a very notable diverse fungal population.