Ablation of XP-V Gene Causes Adipose Tissue Senescence and Metabolic Abnormalities
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The Hypotensive Effect of Activated Apelin Receptor Is Correlated with Β
This is the accepted (postprint) version of the following article: Besserer-Offroy É, et al. (2018), Pharmacol Res. doi: 10.1016/j.phrs.2018.02.032, which has been accepted and published in its final form at https://www.sciencedirect.com/science/article/pii/S1043661817313804 The hypotensive effect of activated apelin receptor is correlated with β-arrestin recruitment Élie Besserer-Offroya,c,ORCID ID, Patrick Bérubéa,c, Jérôme Côtéa,c, Alexandre Murzaa,c, Jean-Michel Longpréa,c, Robert Dumainea, Olivier Lesurb,c, Mannix Auger-Messierb,ORCID ID, Richard Leduca,c,ORCID ID, Éric Marsaulta,c,*,ORCID ID, Philippe Sarreta,c* Affiliations a Department of Pharmacology-Physiology, Faculty of Medicine and Health Sciences, Université de Sherbrooke, Sherbrooke, Québec, CANADA J1H 5N4 b Department of Medicine, Faculty of Medicine and Health Sciences, Université de Sherbrooke, Sherbrooke, Québec, CANADA J1H 5N4 c Institut de pharmacologie de Sherbrooke, Université de Sherbrooke, Sherbrooke, Québec, CANADA J1H 5N4 e-mail addresses [email protected] (ÉBO); [email protected] (PB); [email protected] (JC); [email protected] (AM); Jean- [email protected] (JML); [email protected] (RD); [email protected] (OL); [email protected] (MAM); [email protected] (RL); [email protected] (EM); [email protected] (PS) © 2018. This manuscript version is made available under the CC-BY-NC-ND 4.0 license http://creativecommons.org/licenses/by-nc-nd/4.0/ This is the accepted (postprint) version of the following article: Besserer-Offroy É, et al. (2018), Pharmacol Res. doi: 10.1016/j.phrs.2018.02.032, which has been accepted and published in its final form at https://www.sciencedirect.com/science/article/pii/S1043661817313804 Corresponding Authors *To whom correspondence should be addressed: Philippe Sarret, Ph.D.; [email protected]; Tel. -
Yeast DNA Polymerase Zeta ()Is Essential for Error-Free Replication Past Thymine Glycol
Downloaded from genesdev.cshlp.org on September 24, 2021 - Published by Cold Spring Harbor Laboratory Press Yeast DNA polymerase zeta ()is essential for error-free replication past thymine glycol Robert E. Johnson, Sung-Lim Yu, Satya Prakash, and Louise Prakash1 Sealy Center for Molecular Science, University of Texas Medical Branch at Galveston, Galveston, Texas 77555-1061, USA DNA polymerase zeta (Pol) promotes the mutagenic bypass of DNA lesions in eukaryotes. Genetic studies in Saccharomyces cerevisiae have indicated that relative to the contribution of other pathways, Pol makes only a modest contribution to lesion bypass. Intriguingly, however, disruption of the REV3 gene, which encodes the catalytic subunit of Pol, causes early embryonic lethality in mice. Here, we present genetic and biochemical evidence for the requirement of yeast Pol for predominantly error-free replication past thymine glycol (Tg), a DNA lesion formed frequently by free radical attack. These results raise the possibility that, as in yeast, in higher eukaryotes also, Pol makes a major contribution to the replicative bypass of Tgs as well as other lesions that block synthesis by replicative DNA polymerases. Such a preeminent role of Pol in lesion bypass would ensure that rapid cell divisions continue unabated during early embryonic development, thereby minimizing the generation of DNA strand breaks, chromosome aberrations, and the ensuing apoptotic response. [Keywords: DNApolymerase ; thymine glycol; translesion DNAsynthesis; Pol as an extender; error-free translesion DNAsynthesis by Pol ; yeast] Received October 4, 2002; revised version accepted October 31, 2002. Genetic studies in the yeast Saccharomyces cerevisiae et al. 2000b; Washington et al. 2000). Genetic studies in have indicated the requirement of Rad6–Rad18-depen- yeast have additionally indicated a role for Pol in the dent processes in promoting replication of damaged error-free bypass of cyclobutane pyrimidine dimers DNA. -
Table SI. Genes Upregulated ≥ 2-Fold by MIH 2.4Bl Treatment Affymetrix ID
Table SI. Genes upregulated 2-fold by MIH 2.4Bl treatment Fold UniGene ID Description Affymetrix ID Entrez Gene Change 1558048_x_at 28.84 Hs.551290 231597_x_at 17.02 Hs.720692 238825_at 10.19 93953 Hs.135167 acidic repeat containing (ACRC) 203821_at 9.82 1839 Hs.799 heparin binding EGF like growth factor (HBEGF) 1559509_at 9.41 Hs.656636 202957_at 9.06 3059 Hs.14601 hematopoietic cell-specific Lyn substrate 1 (HCLS1) 202388_at 8.11 5997 Hs.78944 regulator of G-protein signaling 2 (RGS2) 213649_at 7.9 6432 Hs.309090 serine and arginine rich splicing factor 7 (SRSF7) 228262_at 7.83 256714 Hs.127951 MAP7 domain containing 2 (MAP7D2) 38037_at 7.75 1839 Hs.799 heparin binding EGF like growth factor (HBEGF) 224549_x_at 7.6 202672_s_at 7.53 467 Hs.460 activating transcription factor 3 (ATF3) 243581_at 6.94 Hs.659284 239203_at 6.9 286006 Hs.396189 leucine rich single-pass membrane protein 1 (LSMEM1) 210800_at 6.7 1678 translocase of inner mitochondrial membrane 8 homolog A (yeast) (TIMM8A) 238956_at 6.48 1943 Hs.741510 ephrin A2 (EFNA2) 242918_at 6.22 4678 Hs.319334 nuclear autoantigenic sperm protein (NASP) 224254_x_at 6.06 243509_at 6 236832_at 5.89 221442 Hs.374076 adenylate cyclase 10, soluble pseudogene 1 (ADCY10P1) 234562_x_at 5.89 Hs.675414 214093_s_at 5.88 8880 Hs.567380; far upstream element binding protein 1 (FUBP1) Hs.707742 223774_at 5.59 677825 Hs.632377 small nucleolar RNA, H/ACA box 44 (SNORA44) 234723_x_at 5.48 Hs.677287 226419_s_at 5.41 6426 Hs.710026; serine and arginine rich splicing factor 1 (SRSF1) Hs.744140 228967_at 5.37 -
GPCR Regulation of ATP Efflux from Astrocytes
G PROTEIN-COUPLED RECEPTOR REGULATION OF ATP RELEASE FROM ASTROCYTES by ANDREW EDWARD BLUM Thesis advisor: Dr. George R. Dubyak Submitted in partial fulfillment of the requirements For the degree of Doctor of Philosophy Department of Physiology and Biophysics CASE WESTERN RESERVE UNIVERSITY May, 2010 CASE WESTERN RESERVE UNIVERSITY SCHOOL OF GRADUATE STUDIES We hereby approve the thesis/dissertation of _____________________________________________________ candidate for the ______________________degree *. (signed)_______________________________________________ (chair of the committee) ________________________________________________ ________________________________________________ ________________________________________________ ________________________________________________ ________________________________________________ (date) _______________________ *We also certify that written approval has been obtained for any proprietary material contained therein. Dedication I am greatly indebted to my thesis advisor Dr. George Dubyak. Without his support, patience, and advice this work would not have been possible. I would also like to acknowledge Dr. Robert Schleimer and Dr. Walter Hubbard for their encouragement as I began my research career. My current and past thesis committee members Dr. Matthias Buck, Dr. Cathleen Carlin, Dr. Edward Greenfield, Dr. Ulrich Hopfer, Dr. Gary Landreth, Dr. Corey Smith, Dr. Jerry Silver have provided invaluable guidance and advice for which I am very grateful. A special thanks to all of the past and present -
Ubiquitin and Ubiquitin-Like Proteins Are Essential Regulators of DNA Damage Bypass
cancers Review Ubiquitin and Ubiquitin-Like Proteins Are Essential Regulators of DNA Damage Bypass Nicole A. Wilkinson y, Katherine S. Mnuskin y, Nicholas W. Ashton * and Roger Woodgate * Laboratory of Genomic Integrity, National Institute of Child Health and Human Development, National Institutes of Health, 9800 Medical Center Drive, Rockville, MD 20850, USA; [email protected] (N.A.W.); [email protected] (K.S.M.) * Correspondence: [email protected] (N.W.A.); [email protected] (R.W.); Tel.: +1-301-435-1115 (N.W.A.); +1-301-435-0740 (R.W.) Co-first authors. y Received: 29 August 2020; Accepted: 29 September 2020; Published: 2 October 2020 Simple Summary: Ubiquitin and ubiquitin-like proteins are conjugated to many other proteins within the cell, to regulate their stability, localization, and activity. These modifications are essential for normal cellular function and the disruption of these processes contributes to numerous cancer types. In this review, we discuss how ubiquitin and ubiquitin-like proteins regulate the specialized replication pathways of DNA damage bypass, as well as how the disruption of these processes can contribute to cancer development. We also discuss how cancer cell survival relies on DNA damage bypass, and how targeting the regulation of these pathways by ubiquitin and ubiquitin-like proteins might be an effective strategy in anti-cancer therapies. Abstract: Many endogenous and exogenous factors can induce genomic instability in human cells, in the form of DNA damage and mutations, that predispose them to cancer development. Normal cells rely on DNA damage bypass pathways such as translesion synthesis (TLS) and template switching (TS) to replicate past lesions that might otherwise result in prolonged replication stress and lethal double-strand breaks (DSBs). -
Dissection of Gtpase-Activating Proteins Reveals Functional Asymmetry in the COPI Coat of Budding Yeast Eric C
© 2019. Published by The Company of Biologists Ltd | Journal of Cell Science (2019) 132, jcs232124. doi:10.1242/jcs.232124 RESEARCH ARTICLE Dissection of GTPase-activating proteins reveals functional asymmetry in the COPI coat of budding yeast Eric C. Arakel1, Martina Huranova2,3,*, Alejandro F. Estrada2,*, E-Ming Rau2, Anne Spang2,‡ and Blanche Schwappach1,4,‡ ABSTRACT The COPI coat is formed by an obligate heptamer – also termed – α β′ ε β γ δ ζ The Arf GTPase controls formation of the COPI vesicle coat. Recent coatomer consisting of , , , , , and subunits, and is recruited structural models of COPI revealed the positioning of two Arf1 en bloc to membranes (Hara-Kuge et al., 1994). Fundamentally, the molecules in contrasting molecular environments. Each of these COPI coat mediates the retrograde trafficking of proteins and lipids pockets for Arf1 is expected to also accommodate an Arf GTPase- from the Golgi to the ER, and within intra-Golgi compartments activating protein (ArfGAP). Structural evidence and protein (Arakel et al., 2016; Beck et al., 2009; Pellett et al., 2013; Spang and interactions observed between isolated domains indirectly suggest Schekman, 1998). Several reports have also implicated COPI in that each niche preferentially recruits one of the two ArfGAPs known endosomal recycling and regulation of lipid droplet homeostasis to affect COPI, i.e. Gcs1/ArfGAP1 and Glo3/ArfGAP2/3, although (Aniento et al., 1996; Beller et al., 2008; Xu et al., 2017). only partial structures are available. The functional role of the unique Activation of the small GTPase Arf1 and its subsequent non-catalytic domain of either ArfGAP has not been integrated into membrane anchoring by exchanging GDP with GTP through a the current COPI structural model. -
Allosteric Activation of the Nitric Oxide Receptor Soluble Guanylate Cyclase
RESEARCH ARTICLE Allosteric activation of the nitric oxide receptor soluble guanylate cyclase mapped by cryo-electron microscopy Benjamin G Horst1†, Adam L Yokom2,3†, Daniel J Rosenberg4,5, Kyle L Morris2,3‡, Michal Hammel4, James H Hurley2,3,4,5*, Michael A Marletta1,2,3* 1Department of Chemistry, University of California, Berkeley, Berkeley, United States; 2Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, United States; 3Graduate Group in Biophysics, University of California, Berkeley, Berkeley, United States; 4Molecular Biophysics and Integrated Bioimaging, Lawrence Berkeley National Laboratory, Berkeley, United States; 5California Institute for Quantitative Biosciences, University of California, Berkeley, Berkeley, United States Abstract Soluble guanylate cyclase (sGC) is the primary receptor for nitric oxide (NO) in mammalian nitric oxide signaling. We determined structures of full-length Manduca sexta sGC in both inactive and active states using cryo-electron microscopy. NO and the sGC-specific stimulator YC-1 induce a 71˚ rotation of the heme-binding b H-NOX and PAS domains. Repositioning of the b *For correspondence: H-NOX domain leads to a straightening of the coiled-coil domains, which, in turn, use the motion to [email protected] (JHH); move the catalytic domains into an active conformation. YC-1 binds directly between the b H-NOX [email protected] (MAM) domain and the two CC domains. The structural elongation of the particle observed in cryo-EM was †These authors contributed corroborated in solution using small angle X-ray scattering (SAXS). These structures delineate the equally to this work endpoints of the allosteric transition responsible for the major cyclic GMP-dependent physiological Present address: ‡MRC London effects of NO. -
Rhodopsin-Cyclases for Photocontrol of Cgmp/Camp and 2.3 Å Structure of the Adenylyl Cyclase Domain
ARTICLE DOI: 10.1038/s41467-018-04428-w OPEN Rhodopsin-cyclases for photocontrol of cGMP/cAMP and 2.3 Å structure of the adenylyl cyclase domain Ulrike Scheib1, Matthias Broser1, Oana M. Constantin 2, Shang Yang3, Shiqiang Gao3 Shatanik Mukherjee1, Katja Stehfest1, Georg Nagel3, Christine E. Gee 2 & Peter Hegemann1 1234567890():,; The cyclic nucleotides cAMP and cGMP are important second messengers that orchestrate fundamental cellular responses. Here, we present the characterization of the rhodopsin- guanylyl cyclase from Catenaria anguillulae (CaRhGC), which produces cGMP in response to green light with a light to dark activity ratio >1000. After light excitation the putative signaling state forms with τ = 31 ms and decays with τ = 570 ms. Mutations (up to 6) within the nucleotide binding site generate rhodopsin-adenylyl cyclases (CaRhACs) of which the double mutated YFP-CaRhAC (E497K/C566D) is the most suitable for rapid cAMP production in neurons. Furthermore, the crystal structure of the ligand-bound AC domain (2.25 Å) reveals detailed information about the nucleotide binding mode within this recently discovered class of enzyme rhodopsin. Both YFP-CaRhGC and YFP-CaRhAC are favorable optogenetic tools for non-invasive, cell-selective, and spatio-temporally precise modulation of cAMP/cGMP with light. 1 Institute for Biology, Experimental Biophysics, Humboldt-Universität zu Berlin, 10115 Berlin, Germany. 2 Institute for Synaptic Physiology, Center for Molecular Neurobiology Hamburg, University Medical Center Hamburg-Eppendorf, 20251 Hamburg, Germany. 3 Department of Biology, Institute for Molecular Plant Physiology and Biophysics, Biocenter, Julius-Maximilians-University of Würzburg, Julius-von-Sachs-Platz 2, 97082 Würzburg, Germany. These authors contributed equally: Christine E. -
Endogenous Overexpression of an Active Phosphorylated Form of DNA Polymerase Β Under Oxidative Stress in Trypanosoma Cruzi
RESEARCH ARTICLE Endogenous overexpression of an active phosphorylated form of DNA polymerase β under oxidative stress in Trypanosoma cruzi Diego A. Rojas1☯, Fabiola Urbina2☯, Sandra Moreira-Ramos2, Christian Castillo3, Ulrike Kemmerling3, Michel Lapier4, Juan Diego Maya4, Aldo Solari2, Edio Maldonado2¤* 1 Microbiology and Micology Program, ICBM, Faculty of Medicine, University of Chile, Santiago, Chile, 2 Cellular and Molecular Biology Program, ICBM, Faculty of Medicine, University of Chile, Santiago, Chile, 3 Anatomy and Developmental Biology Program, ICBM, Faculty of Medicine, University of Chile, Santiago, a1111111111 Chile, 4 Molecular and Clinical Pharmacology Program, ICBM, Faculty of Medicine, University of Chile, a1111111111 Santiago, Chile a1111111111 a1111111111 ☯ These authors contributed equally to this work. a1111111111 ¤ Current address: Independencia, Santiago, Chile * [email protected] Abstract OPEN ACCESS Trypanosoma cruzi is exposed during its life to exogenous and endogenous oxidative Citation: Rojas DA, Urbina F, Moreira-Ramos S, Castillo C, Kemmerling U, Lapier M, et al. (2018) stress, leading to damage of several macromolecules such as DNA. There are many DNA Endogenous overexpression of an active repair pathways in the nucleus and mitochondria (kinetoplast), where specific protein com- phosphorylated form of DNA polymerase β under plexes detect and eliminate damage to DNA. One group of these proteins is the DNA poly- oxidative stress in Trypanosoma cruzi. PLoS Negl Trop Dis 12(2): e0006220. https://doi.org/10.1371/ merases. In particular, Tc DNA polymerase β participates in kinetoplast DNA replication and journal.pntd.0006220 repair. However, the mechanisms which control its expression under oxidative stress are Editor: Joachim Clos, Bernhard Nocht Institute for still unknown. -
Mcf7specificall
Glycoprotein hormones alpha chain Hormone ligand-binding receptors Glycoprotein hormones Mineralocorticoid biosynthesis TFAP2 (AP-2) family regulates transcriptionAndrogenThyroid of biosynthesis growth stimulating factors hormone and their receptor receptors Reactions specificThyroxine to the complex biosynthesis N-glycan synthesis pathway Multidrug resistance-associated proteinGlucagon-like 5 peptide 1 receptor 78 kDa glucose-regulated protein Hyaluronan biosynthesis and export Glucagon-type ligand receptors Platelet degranulation G alpha (s)ABC-family signalling proteinsevents mediated transport PERKATF6 regulates(ATF6-alpha) gene activates expression chaperones Guanine nucleotide-binding protein G(s), subunit alpha Regulation of HSF1-mediated heat shock response Glucagon-like Peptide-1 (GLP1) regulates insulin secretion ATF6 (ATF6-alpha)IRE1alpha activates activates chaperone chaperones genes Parathyroid hormone receptor Serotonin (5-HT)Prostacyclin receptorG alpha signalling (z) signalling through events prostacyclin receptor Ras-related protein Rab-9A G alpha (q) signalling events GlucagonHedgehog signaling 'off' in metabolic state regulation PKA activation in glucagon signalling RAB geranylgeranylation Ubiquitin carboxyl-terminal hydrolase 1 Vasopressin regulates renal water homeostasis via Aquaporins Rap guanine nucleotide exchange factor 3 Class B/2 (Secretin Neuropeptidefamily receptors) S receptor Rap guanine nucleotide exchange factor 4 RetrogradeRAB transportGEFs exchange at the Trans-Golgi-Network GTP for GDP on RABs Serotonin -
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by Submitted in partial satisfaction of the requirements for degree of in in the GRADUATE DIVISION of the UNIVERSITY OF CALIFORNIA, SAN FRANCISCO Approved: ______________________________________________________________________________ Chair ______________________________________________________________________________ ______________________________________________________________________________ ______________________________________________________________________________ ______________________________________________________________________________ Committee Members Copyright 2019 by Adolfo Cuesta ii Acknowledgements For me, completing a doctoral dissertation was a huge undertaking that was only possible with the support of many people along the way. First, I would like to thank my PhD advisor, Jack Taunton. He always gave me the space to pursue my own ideas and interests, while providing thoughtful guidance. Nearly every aspect of this project required a technique that was completely new to me. He trusted that I was up to the challenge, supported me throughout, helped me find outside resources when necessary. I remain impressed with his voracious appetite for the literature, and ability to recall some of the most subtle, yet most important details in a paper. Most of all, I am thankful that Jack has always been so generous with his time, both in person, and remotely. I’ve enjoyed our many conversations and hope that they will continue. I’d also like to thank my thesis committee, Kevan Shokat and David Agard for their valuable support, insight, and encouragement throughout this project. My lab mates in the Taunton lab made this such a pleasant experience, even on the days when things weren’t working well. I worked very closely with Tangpo Yang on the mass spectrometry aspects of this project. Xiaobo Wan taught me almost everything I know about protein crystallography. Thank you as well to Geoff Smith, Jordan Carelli, Pat Sharp, Yazmin Carassco, Keely Oltion, Nicole Wenzell, Haoyuan Wang, Steve Sethofer, and Shyam Krishnan, Shawn Ouyang and Qian Zhao. -
The ATP-Releasing Maxi-Cl Channel: Its Identity, Molecular Partners, and Physiological/Pathophysiological Implications
life Review The ATP-Releasing Maxi-Cl Channel: Its Identity, Molecular Partners, and Physiological/Pathophysiological Implications Ravshan Z. Sabirov 1,2,*, Md. Rafiqul Islam 1,3, Toshiaki Okada 1,4, Petr G. Merzlyak 1,2 , Ranokhon S. Kurbannazarova 1,2, Nargiza A. Tsiferova 1,2 and Yasunobu Okada 1,5,6,* 1 Division of Cell Signaling, National Institute for Physiological Sciences (NIPS), Okazaki 444-8787, Japan; rafi[email protected] (M.R.I.); [email protected] (T.O.); [email protected] (P.G.M.); [email protected] (R.S.K.); [email protected] (N.A.T.) 2 Institute of Biophysics and Biochemistry, National University of Uzbekistan, Tashkent 100174, Uzbekistan 3 Department of Biochemistry and Molecular Biology, Jagannath University, Dhaka 1100, Bangladesh 4 Veneno Technologies Co. Ltd., Tsukuba 305-0031, Japan 5 Department of Physiology, Kyoto Prefectural University of Medicine, Kyoto 602-8566, Japan 6 Department of Physiology, School of Medicine, Aichi Medical University, Nagakute 480-1195, Japan * Correspondence: [email protected] (R.Z.S.); [email protected] (Y.O.); Tel.: +81-46-858-1501 (Y.O.); Fax: +81-46-858-1542 (Y.O.) Abstract: The Maxi-Cl phenotype accounts for the majority (app. 60%) of reports on the large- conductance maxi-anion channels (MACs) and has been detected in almost every type of cell, including placenta, endothelium, lymphocyte, cardiac myocyte, neuron, and glial cells, and in cells originating from humans to frogs. A unitary conductance of 300–400 pS, linear current-to- Citation: Sabirov, R.Z.; Islam, M..R.; voltage relationship, relatively high anion-to-cation selectivity, bell-shaped voltage dependency, Okada, T.; Merzlyak, P.G.; and sensitivity to extracellular gadolinium are biophysical and pharmacological hallmarks of the Kurbannazarova, R.S.; Tsiferova, Maxi-Cl channel.