From the Middle Triassic of Guizhou, China
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Vertebrate Proteins Predicted from Genomic Sequences
Vertebrate proteins predicted from genomic sequences VWD C8 TIL PTS Mucin2_WxxW F5_F8_type_C FCGBP_N VWC Lethenteron_camtschaticum Cyclostomata; Hyperoartia; Petromyzontiformes; Petromyzontidae; Lethenteron Lethenteron_camtschaticum.0.pep1 Petromyzon_marinus Cyclostomata; Hyperoartia; Petromyzontiformes; Petromyzontidae; Petromyzon Petromyzon_marinus.0.pep1 Callorhinchus_milii Gnathostomata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus Callorhinchus_milii.0.pep1 Callorhinchus_milii Gnathostomata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus Callorhinchus_milii.0.pep2 Callorhinchus_milii Gnathostomata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus Callorhinchus_milii.0.pep3 Lepisosteus_oculatus Gnathostomata; Teleostomi; Euteleostomi; Actinopterygii; Actinopteri; Neopterygii; Holostei; Semionotiformes; Lepisosteus_oculatus.0.pep1 Lepisosteus_oculatus Gnathostomata; Teleostomi; Euteleostomi; Actinopterygii; Actinopteri; Neopterygii; Holostei; Semionotiformes; Lepisosteus_oculatus.0.pep2 Lepisosteus_oculatus Gnathostomata; Teleostomi; Euteleostomi; Actinopterygii; Actinopteri; Neopterygii; Holostei; Semionotiformes; Lepisosteus_oculatus.0.pep3 Lepisosteus_oculatus Gnathostomata; Teleostomi; Euteleostomi; Actinopterygii; Actinopteri; Neopterygii; Holostei; Semionotiformes; Lepisosteus_oculatus.1.pep1 TILa Cynoglossus_semilaevis Gnathostomata; Teleostomi; Euteleostomi; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Cynoglossus_semilaevis.1.pep1 -
From the Crato Formation (Lower Cretaceous)
ORYCTOS.Vol. 3 : 3 - 8. Décembre2000 FIRSTRECORD OT CALAMOPLEU RUS (ACTINOPTERYGII:HALECOMORPHI: AMIIDAE) FROMTHE CRATO FORMATION (LOWER CRETACEOUS) OF NORTH-EAST BRAZTL David M. MARTILL' and Paulo M. BRITO'z 'School of Earth, Environmentaland PhysicalSciences, University of Portsmouth,Portsmouth, POl 3QL UK. 2Departmentode Biologia Animal e Vegetal,Universidade do Estadode Rio de Janeiro, rua SâoFrancisco Xavier 524. Rio de Janeiro.Brazll. Abstract : A partial skeleton representsthe first occurrenceof the amiid (Actinopterygii: Halecomorphi: Amiidae) Calamopleurus from the Nova Olinda Member of the Crato Formation (Aptian) of north east Brazil. The new spe- cimen is further evidencethat the Crato Formation ichthyofauna is similar to that of the slightly younger Romualdo Member of the Santana Formation of the same sedimentary basin. The extended temporal range, ?Aptian to ?Cenomanian,for this genus rules out its usefulnessas a biostratigraphic indicator for the Araripe Basin. Key words: Amiidae, Calamopleurus,Early Cretaceous,Brazil Première mention de Calamopleurus (Actinopterygii: Halecomorphi: Amiidae) dans la Formation Crato (Crétacé inférieur), nord est du Brésil Résumé : la première mention dans le Membre Nova Olinda de la Formation Crato (Aptien ; nord-est du Brésil) de I'amiidé (Actinopterygii: Halecomorphi: Amiidae) Calamopleurus est basée sur la découverted'un squelettepar- tiel. Le nouveau spécimen est un élément supplémentaireindiquant que I'ichtyofaune de la Formation Crato est similaire à celle du Membre Romualdo de la Formation Santana, située dans le même bassin sédimentaire. L'extension temporelle de ce genre (?Aptien à ?Cénomanien)ne permet pas de le considérer comme un indicateur biostratigraphiquepour le bassin de l'Araripe. Mots clés : Amiidae, Calamopleurus, Crétacé inférieu4 Brésil INTRODUCTION Araripina and at Mina Pedra Branca, near Nova Olinda where cf. -
Constraints on the Timescale of Animal Evolutionary History
Palaeontologia Electronica palaeo-electronica.org Constraints on the timescale of animal evolutionary history Michael J. Benton, Philip C.J. Donoghue, Robert J. Asher, Matt Friedman, Thomas J. Near, and Jakob Vinther ABSTRACT Dating the tree of life is a core endeavor in evolutionary biology. Rates of evolution are fundamental to nearly every evolutionary model and process. Rates need dates. There is much debate on the most appropriate and reasonable ways in which to date the tree of life, and recent work has highlighted some confusions and complexities that can be avoided. Whether phylogenetic trees are dated after they have been estab- lished, or as part of the process of tree finding, practitioners need to know which cali- brations to use. We emphasize the importance of identifying crown (not stem) fossils, levels of confidence in their attribution to the crown, current chronostratigraphic preci- sion, the primacy of the host geological formation and asymmetric confidence intervals. Here we present calibrations for 88 key nodes across the phylogeny of animals, rang- ing from the root of Metazoa to the last common ancestor of Homo sapiens. Close attention to detail is constantly required: for example, the classic bird-mammal date (base of crown Amniota) has often been given as 310-315 Ma; the 2014 international time scale indicates a minimum age of 318 Ma. Michael J. Benton. School of Earth Sciences, University of Bristol, Bristol, BS8 1RJ, U.K. [email protected] Philip C.J. Donoghue. School of Earth Sciences, University of Bristol, Bristol, BS8 1RJ, U.K. [email protected] Robert J. -
A Middle Triassic Kyphosichthyiform from Yunnan, China, and Phylogenetic Reassessment of Early Ginglymodians
SUPPLEMENTARY DATA A Middle Triassic kyphosichthyiform from Yunnan, China, and phylogenetic reassessment of early ginglymodians XU Guang-Hui1,2 MA Xin-Ying1,2,3 WU Fei-Xiang1,2 REN Yi1,2,3 (1 Key Laboratory of Vertebrate Evolution and Human Origins of Chinese Academy of Sciences, Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of Sciences Beijing 100044 [email protected]) (2 CAS Center for Excellence in Life and Paleoenvironment Beijing 100044) (3 University of Chinese Academy of Sciences Beijing 100049) Part A Material examined and references Amia calva and Solnhofenamia elongata (Grande and Bemis, 1998); Araripelepidotes temnurus (Maisey, 1991; Thies, 1996); Asialepidotus shingyiensis (Xu and Ma, 2018); Atractosteus spatula, Cuneatus wileyi, Dentilepisosteus laevis, Lepisosteus osseus, Masillosteus janeae, and Obaichthys decoratus (Grande, 2010); Caturus furcatus (Patterson, 1975; Lambers, 1992; Grande and Bemis, 1998; FMNH UC2057); Dorsetichthys (‘Pholidophorus’) bechei (Patterson, 1975; Grande and Bemis, 1998; Arratia, 2013); Elops hawaiensis (Forey, 1973); Fuyuanichthys wangi (Xu et al., 2018); Ichthyokentema purbeckensis (Griffith and Patterson, 1963); Ionoscopus cyprinoides (Grande and Bemis, 1998; Maisey, 1999; FMNH P15472); Isanichthys palustris (Cavin and Suteethorn, 2006); Kyphosichthys grandei (Xu and Wu, 2012; Sun and Ni, 2018); Lashanichthys (‘Sangiorgioichthys’) sui (López-Arbarello et al., 2011); Lashanichthys (‘Sangiorgioichthys’) yangjuanensis (Chen et al, 2014); Lepidotes gigas (Thies, -
Marine Early Triassic Osteichthyes from Spiti, Indian Himalayas
Swiss J Palaeontol (2016) 135:275–294 DOI 10.1007/s13358-015-0098-6 Marine Early Triassic Osteichthyes from Spiti, Indian Himalayas 1 1 1 1 Carlo Romano • David Ware • Thomas Bru¨hwiler • Hugo Bucher • Winand Brinkmann1 Received: 12 March 2015 / Accepted: 11 August 2015 / Published online: 28 September 2015 Ó Akademie der Naturwissenschaften Schweiz (SCNAT) 2015 Abstract A new, marine osteichthyan (bony fish) fauna strata of other localities. The study of Early Triassic fish from the Early Triassic of northern India is presented. The assemblages, including the presented one, is fundamental material was collected in situ at localities within Pin Valley for our understanding of the great osteichthyan diversifi- (Lahaul and Spiti District, Himachal Pradesh, India) and is cation after the Late Permian mass extinction event. dated as middle-late Dienerian (one specimen possibly earliest Smithian). The new ichthyofauna includes a lower Keywords Neotethys Á Northern Indian Margin Á jaw of the predatory basal ray-finned fish Saurichthys,a Gondwana Á Anoxia Á Biotic recovery Á Urohyal nearly complete specimen of a parasemionotid neoptery- gian (cf. Watsonulus cf. eugnathoides), as well as further Abbreviations articulated and disarticulated remains (Actinopterygii CMNFV Canadian Museum of Nature (Fossil indet., Actinistia indet.), and thus comprises the most Vertebrate), Ottawa, Canada complete Triassic fish fossils known from the Indian sub- MNHN.F Muse´um National d’Histoire Naturelle, Paris, continent. Saurichthys is known from many Triassic France localities and reached a global distribution rapidly after the PIMUZ Pala¨ontologisches Institut und Museum, Late Permian mass extinction event. Parasemionotidae, a Universita¨tZu¨rich, Zu¨rich, Schweiz species-rich family restricted to the Early Triassic, also achieved widespread distribution during this epoch. -
Article (PDF, 1844
Fossil Record 10(1) (2007), 17–37 / DOI 10.1002/mmng.200600016 Eurycormus –– Eurypoma, two Jurassic actinopterygian genera with mixed identity Gloria Arratia* & Hans-Peter Schultze** The University of Kansas, Biodiversity Research Center and Department of Ecology and Evolutionary Biology, 1345 Jayhawk Blvd., Lawrence, KS 66045-7561. U.S.A. Received 1 August 2006, accepted 31 August 2006 Published online 30 January 2007 With 14 figures Key words: actinopterygian fishes, Upper Jurassic, southern Germany, morphology, systematics. Abstract Three Late Jurassic actinopterygian species are commonly placed in the genus Eurycormus: E. egertoni, E. grandis and E. spe- ciosus. A detailed comparison supports an earlier assignment to two different genera, Eurycormus Wagner, 1863 (speciosus) and Eurypoma Huxley, 1866 (E. egertoni and E. grande). Systematically, the two genera are only distantly related; Eurycormus belongs to the Teleosteomorpha, whereas Eurypoma is a halecomorph closely related to or a member of the Caturoidea with- in the Amiiformes. Schlu¨ sselwo¨ rter: Actinopterygii, Oberer Jura, Su¨ ddeutschland, Morphologie, Systematik. Zusammenfassung Drei oberjurassische Actinopterygier-Arten, egertoni, grandis und speciosus, werden gewo¨ hnlich zur Gattung Eurycormus ge- stellt. Ein detaillierter Vergleich der drei Arten besta¨tigt eine fru¨ here Zuordnung zu zwei verschiedenen Gattungen, Eurycor- mus Wagner, 1863 (speciosus) und Eurypoma Huxley, 1866 (E. egertoni und E. grande), die zwei ho¨ heren Taxa innerhalb der Neopterygii zugeordnet werden: Eurycormus zu den Teleosteomorpha und Eurypoma zu den Amiiformes innerhalb der Hale- comorphi, mo¨ glicherweise nahe oder innerhalb der Caturoidea. # 2007 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim Introduction cies, E. grandis (see Fig. 2A), from the Upper Jur- assic of Cambridgeshire, England, within this Agassiz (1843) named a Late Jurassic fish from genus. -
The Genus Furo (Pisces, Halecomorphi) from the Upper Jurassic Plattenkalke of Germany
ORYCTOS,Vol. 1 :23-35,Octobre 1998 THEGENUS FURO (PISCES, HALECOMORPHI) FROMTHE UPPERJURASSIC PLATTENKALKE OF GERMANY Paul H. LAMBERS PaleontologischeWerkkamer, Biologisch Centrum RUG, Postbus 14,9750 AA Haren, the Netherlands. e-mail: phlambers@ biol.rug.nl Abstract : An overview of the speciesassigned to the genus Furo fowd in the German lithographic limestones of the Solnhofen-area(Bavaria) and Nusplingen (Baden-Wiirttemberg) is presentedand the monophyly of the Upper JurassicFuro is discussed.Six speciescan be recognized: 'F.' latim.anus,'F.' longiserratus, 'F.' microlepidotes, 'E' aldingeri, 'F.' angustus and'F.' miinsteri. Among these 'E' angustus and'F.' miinsteri form a monophyletic group, to which 'F.' aldingeri might be related as well. 'F.' longiserrarus might be closely related to the Ophiopsidae,whereas 'E' microlepidotes shows similarities with the Caturidae. The position of 'F.' latimanus remains to be determined. There are no indications of a monophyletic genusof Furo and the relationshipsof the Upper Jurassicfurids with the Lower Jurassicspecies of Furo remain to be examined. Key words: Eugnathus, Furo, Halecomorphi, phylogeny, Plattenknlke, Tithonian Le genreFuro (Pisces,Halecomorphi) du Jurassiquesupérieur d'Allemagne. Résumé : Les différentes espècesdu genre Furo enprovenancedes gisementsallemands à calcaireslithographiques des régions de Solnhofen (Bavière) et de Nusplingen (Bade-Wiirttemberg)sont présentéeset la monophylie du genre Furo du Jurassiquesupérieur est discutée.Six espècespeuvent être reconnues: '.8' Iatimanus, -
Halecomorphi, Amiidae
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Open Marine Archive BULLETIN DE L’INSTITUT ROYAL DES SCIENCES NATURELLES DE BELGIQUE SCIENCES DE LA TERRE, 80: 163-170, 2010 BULLETIN VAN HET KONINKLIJK BELGISCH INSTITUUT VOOR NATUURWETENSCHAPPEN AARDWETENSCHAPPEN, 80: 163-170, 2010 First fossil record of an amiid fish (Halecomorphi, Amiidae) from the Latest Cretaceous of Patagonia, Argentina, and comments on the status of Pappichthys patagonica AMEGHINO , 1906 (Teleostei, Osteoglossidae) by Sergio BOGAN, Louis TAVERNE & Federico L. AGNOLIN BOG A N , S., TAVERNE , L. & AGNO L IN , F.L., 2010 – First fossil Introduction record of an amiid fish (Halecomorphi, Amiidae) from the Latest Cretaceous of Patagonia, Argentina, and comments on the The Amiiformes are halecomorph fishes represented status of Pappichthys patagonica AMEGHINO , 1906 (Teleostei, Osteoglossidae). Bulletin de l’Institut royal des Sciences naturelles today by the single extant species Amia calva de Belgique, Sciences de la Terre, 80: 163-170, 4 figs, Brussels, LINN A EUS , 1766, the bowfin, which is geographically October 31, 2010 – ISSN 0374-6291. distributed among freshwater lakes and rivers in Eastern North America (NE L SON , 2006: 99). Abstract This large predaceous fish constitutes a relict of a taxonomic group widely distributed among most We describe the first authenticated fossil record for the family continents during the Mesozoic and the Caenozoic. Amiidae in Argentina. The specimen consists on an isolated dentary coming from the Uppermost Cretaceous Allen Formation, from Río The first record for the Amiiformes occurs in the Late Negro province, Patagonia, Argentina, and belonging probably Triassic (Norian), whereas the oldest record of the to the genus Amia. -
The Genetic Factors of Bilaterian Evolution Peter Heger1*, Wen Zheng1†, Anna Rottmann1, Kristen a Panfilio2,3, Thomas Wiehe1
RESEARCH ARTICLE The genetic factors of bilaterian evolution Peter Heger1*, Wen Zheng1†, Anna Rottmann1, Kristen A Panfilio2,3, Thomas Wiehe1 1Institute for Genetics, Cologne Biocenter, University of Cologne, Cologne, Germany; 2Institute for Zoology: Developmental Biology, Cologne Biocenter, University of Cologne, Cologne, Germany; 3School of Life Sciences, University of Warwick, Gibbet Hill Campus, Coventry, United Kingdom Abstract The Cambrian explosion was a unique animal radiation ~540 million years ago that produced the full range of body plans across bilaterians. The genetic mechanisms underlying these events are unknown, leaving a fundamental question in evolutionary biology unanswered. Using large-scale comparative genomics and advanced orthology evaluation techniques, we identified 157 bilaterian-specific genes. They include the entire Nodal pathway, a key regulator of mesoderm development and left-right axis specification; components for nervous system development, including a suite of G-protein-coupled receptors that control physiology and behaviour, the Robo- Slit midline repulsion system, and the neurotrophin signalling system; a high number of zinc finger transcription factors; and novel factors that previously escaped attention. Contradicting the current view, our study reveals that genes with bilaterian origin are robustly associated with key features in extant bilaterians, suggesting a causal relationship. *For correspondence: [email protected] Introduction The taxon Bilateria consists of multicellular animals -
Body-Shape Diversity in Triassic–Early Cretaceous Neopterygian fishes: Sustained Holostean Disparity and Predominantly Gradual Increases in Teleost Phenotypic Variety
Body-shape diversity in Triassic–Early Cretaceous neopterygian fishes: sustained holostean disparity and predominantly gradual increases in teleost phenotypic variety John T. Clarke and Matt Friedman Comprising Holostei and Teleostei, the ~32,000 species of neopterygian fishes are anatomically disparate and represent the dominant group of aquatic vertebrates today. However, the pattern by which teleosts rose to represent almost all of this diversity, while their holostean sister-group dwindled to eight extant species and two broad morphologies, is poorly constrained. A geometric morphometric approach was taken to generate a morphospace from more than 400 fossil taxa, representing almost all articulated neopterygian taxa known from the first 150 million years— roughly 60%—of their history (Triassic‒Early Cretaceous). Patterns of morphospace occupancy and disparity are examined to: (1) assess evidence for a phenotypically “dominant” holostean phase; (2) evaluate whether expansions in teleost phenotypic variety are predominantly abrupt or gradual, including assessment of whether early apomorphy-defined teleosts are as morphologically conservative as typically assumed; and (3) compare diversification in crown and stem teleosts. The systematic affinities of dapediiforms and pycnodontiforms, two extinct neopterygian clades of uncertain phylogenetic placement, significantly impact patterns of morphological diversification. For instance, alternative placements dictate whether or not holosteans possessed statistically higher disparity than teleosts in the Late Triassic and Jurassic. Despite this ambiguity, all scenarios agree that holosteans do not exhibit a decline in disparity during the Early Triassic‒Early Cretaceous interval, but instead maintain their Toarcian‒Callovian variety until the end of the Early Cretaceous without substantial further expansions. After a conservative Induan‒Carnian phase, teleosts colonize (and persistently occupy) novel regions of morphospace in a predominantly gradual manner until the Hauterivian, after which expansions are rare. -
A Phylogenomic Perspective on the Radiation of Ray-Finned Fishes Based Upon Targeted Sequencing of Ultraconserved Elements
1 A phylogenomic perspective on the radiation of 2 ray-finned fishes based upon targeted sequencing of 3 ultraconserved elements 1;2;∗ 1;2 1 1 4 Michael E. Alfaro , Brant C. Faircloth , Laurie Sorenson , Francesco Santini 1 5 Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA, USA 2 6 These authors contributed equally to this work 7 ∗ E-mail: [email protected] arXiv:1210.0120v1 [q-bio.PE] 29 Sep 2012 1 8 Summary 9 Ray-finned fishes constitute the dominant radiation of vertebrates with over 30,000 species. 10 Although molecular phylogenetics has begun to disentangle major evolutionary relationships 11 within this vast section of the Tree of Life, there is no widely available approach for effi- 12 ciently collecting phylogenomic data within fishes, leaving much of the enormous potential 13 of massively parallel sequencing technologies for resolving major radiations in ray-finned 14 fishes unrealized. Here, we provide a genomic perspective on longstanding questions regard- 15 ing the diversification of major groups of ray-finned fishes through targeted enrichment of 16 ultraconserved nuclear DNA elements (UCEs) and their flanking sequence. Our workflow 17 efficiently and economically generates data sets that are orders of magnitude larger than 18 those produced by traditional approaches and is well-suited to working with museum speci- 19 mens. Analysis of the UCE data set recovers a well-supported phylogeny at both shallow and 20 deep time-scales that supports a monophyletic relationship between Amia and Lepisosteus 21 (Holostei) and reveals elopomorphs and then osteoglossomorphs to be the earliest diverging 22 teleost lineages. -
Holostei, Parasemionotidae), a Fossil Fish from the Continental Middle Jurassic of Congo (D
Geo-Eco-Trop., 2020, 44, 3 : 369-382 Osteology and relationships of Lombardina decorata (Holostei, Parasemionotidae), a fossil fish from the continental Middle Jurassic of Congo (D. R. C.) Ostéologie et relations de Lombardina decorata (Holostei, Parasemionotidae), un poisson fossile du Jurassique moyen continental du Congo (R. D. C.) Louis TAVERNE 1 Résumé: L’ostéologie de Lombardina decorata DE SAINT-SEINE, 1955, un petit poisson fossile du Jurassique moyen continental (Formation de Stanleyville) de la République Démocratique du Congo, est étudiée en détails. Ses relations systématiques sont analysées. Un interopercule est présent. Le maxillaire est mobile. Il y a deux vomers. L’endocrâne est ossifié d’une seule pièce, sans os individualisés. Un os mentomeckelien est présent dans la mâchoire inférieure. Il n’y a pas de basihyal ossifié ni d’os intermusculaires. Le préoperculaire est réduit à une branche dorsale élargie avec un bord postérieur arrondi. Ces caractères indiquent que L. decorata appartient aux Neopterygii, aux Holostei et aux Parasemionotidae, une famille de poissons holostéens marins primitifs du Trias inférieur. L. decorata est donc le plus jeune genre de la famille et le seul à avoir été découvert dans des gisements continentaux. Des comparaisons sont faites avec les Parasemionotidae de Madagascar. Deux spécimens du Trias malgache, erronément rapporté au genre Watsonulus, possèdent un parasphénoïde identique à celui de L. decorata et pourrait être le prédécesseur de l’espèce congolaise. Mots-clés: Holostei, Parasemionotidae, Lombardina decorata, ostéologie, relations, Jurassique moyen continental, Formation de Stanleyville, République Démocratique du Congo. Abstract: The osteology of Lombardina decorata DE SAINT-SEINE, 1955, a small fossil fish from the continental Middle Jurassic (Stanleyville Formation) of the Democratic Republic of Congo, is studied in details.