Species, the Bonnet Macaque (Macaca Radiata)
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Rhesus Macaque Sequencing
White Paper for Complete Sequencing of the Rhesus Macaque (Macaca mulatta) Genome Jeffrey Rogers1, Michael Katze 2, Roger Bumgarner2, Richard A. Gibbs 3 and George M. Weinstock3 I. Introduction Humans are members of the Order Primates and our closest evolutionary relatives are other primate species. This makes primate models of human disease particularly important, as the underlying physiology and metabolism, as well as genomic structure, are more similar to humans than are other mammals. Chimpanzees (Pan troglodytes) are the animals most similar to humans in overall DNA sequence, with interspecies sequence differences of approximately 1- 1.5% (Stewart and Disotell 1998, Page and Goodman 2001). The other apes, including gorillas and orangutans are nearly as similar to humans. The animals next most closely related to humans are Old World monkeys, superfamily Cercopithecoidea. This group includes the common laboratory species of rhesus macaque (Macaca mulatta), baboon (Papio hamadryas), pig-tailed macaque (Macaca nemestrina) and African green monkey (Chlorocebus aethiops). The human evolutionary lineage separated from the ancestors of chimpanzees about 6-7 million years ago (MYA), while the human/ape lineage diverged from Old World monkeys about 25 MYA (Stewart and Disotell 1998), and from another important primate group, the New World monkeys, more than 35-40 MYA. In comparison, humans diverged from mice and other non- primate mammals about 65-85 MYA (Kumar and Hedges 1998, Eizirik et al 2001). In the evaluation of primate candidates for genome sequencing there should be more to selection of an organism than evolutionary considerations. The chimpanzee’s status as Closest Relative To Human has earned it an exemption from this consideration. -
The Taxonomy of Primates in the Laboratory Context
P0800261_01 7/14/05 8:00 AM Page 3 C HAPTER 1 The Taxonomy of Primates T HE T in the Laboratory Context AXONOMY OF P Colin Groves RIMATES School of Archaeology and Anthropology, Australian National University, Canberra, ACT 0200, Australia 3 What are species? D Taxonomy: EFINITION OF THE The biological Organizing nature species concept Taxonomy means classifying organisms. It is nowadays commonly used as a synonym for systematics, though Disagreement as to what precisely constitutes a species P strictly speaking systematics is a much broader sphere is to be expected, given that the concept serves so many RIMATE of interest – interrelationships, and biodiversity. At the functions (Vane-Wright, 1992). We may be interested basis of taxonomy lies that much-debated concept, the in classification as such, or in the evolutionary implica- species. tions of species; in the theory of species, or in simply M ODEL Because there is so much misunderstanding about how to recognize them; or in their reproductive, phys- what a species is, it is necessary to give some space to iological, or husbandry status. discussion of the concept. The importance of what we Most non-specialists probably have some vague mean by the word “species” goes way beyond taxonomy idea that species are defined by not interbreeding with as such: it affects such diverse fields as genetics, biogeog- each other; usually, that hybrids between different species raphy, population biology, ecology, ethology, and bio- are sterile, or that they are incapable of hybridizing at diversity; in an era in which threats to the natural all. Such an impression ultimately derives from the def- world and its biodiversity are accelerating, it affects inition by Mayr (1940), whereby species are “groups of conservation strategies (Rojas, 1992). -
A Stepwise Male Introduction Procedure to Prevent Inbreeding in Naturalistic Macaque Breeding Groups
animals Article A Stepwise Male Introduction Procedure to Prevent Inbreeding in Naturalistic Macaque Breeding Groups Astrid Rox 1,2, André H. van Vliet 1, Jan A. M. Langermans 1,3,* , Elisabeth H. M. Sterck 1,2 and Annet L. Louwerse 1 1 Biomedical Primate Research Centre, Animal Science Department, 2288 GJ Rijswijk, The Netherlands; [email protected] (A.R.); [email protected] (A.H.v.V.); [email protected] (E.H.M.S.); [email protected] (A.L.L.) 2 Animal Behaviour & Cognition (Formerly Animal Ecology), Department of Biology, Faculty of Science, Utrecht University, 3508 TB Utrecht, The Netherlands 3 Department Population Health Sciences, Division Animals in Science and Society, Faculty of Veterinary Medicine, Utrecht University, 3584 CM Utrecht, The Netherlands * Correspondence: [email protected]; Tel.: +31-152-842-620 Simple Summary: Housing of primates in groups increases animal welfare; however, this requires management to prevent inbreeding. To this end, males are introduced into captive macaque breeding groups, mimicking the natural migration patterns of these primates. However, such male introduc- tions can be risky and unsuccessful. The procedure developed by the Biomedical Primate Research Centre (BPRC), Rijswijk, the Netherlands, to introduce male rhesus macaques (Macaca mulatta) into naturalistic social groups without a breeding male achieves relatively high success rates. Males are stepwise familiarized with and introduced to their new group, while all interactions between the new male and the resident females are closely monitored. Monitoring the behaviour of the resident Citation: Rox, A.; van Vliet, A.H.; females and their new male during all stages of the introduction provides crucial information as to Langermans, J.A.M.; Sterck, E.H.M.; whether or not it is safe to proceed. -
Ranging Bonnet Macaques, Macaca Radiata
Flexibility in Food Extraction Techniques in Urban Free- Ranging Bonnet Macaques, Macaca radiata Madhur Mangalam1, Mewa Singh1,2* 1 Biopsychology Laboratory, University of Mysore, Mysore, India, 2 Evolutionary & Organismal Biology Unit, Jawaharlal Nehru Centre for Advanced Scientific Research, Bangalore, India Abstract Non-human primate populations, other than responding appropriately to naturally occurring challenges, also need to cope with anthropogenic factors such as environmental pollution, resource depletion, and habitat destruction. Populations and individuals are likely to show considerable variations in food extraction abilities, with some populations and individuals more efficient than others at exploiting a set of resources. In this study, we examined among urban free-ranging bonnet macaques, Macaca radiata (a) local differences in food extraction abilities, (b) between-individual variation and within-individual consistency in problem-solving success and the underlying problem-solving characteristics, and (c) behavioral patterns associated with higher efficiency in food extraction. When presented with novel food extraction tasks, the urban macaques having more frequent exposure to novel physical objects in their surroundings, extracted food material from PET bottles and also solved another food extraction task (i.e., extracting an orange from a wire mesh box), more often than those living under more natural conditions. Adults solved the tasks more frequently than juveniles, and females more frequently than males. Both solution-technique and problem-solving characteristics varied across individuals but remained consistent within each individual across the successive presentations of PET bottles. The macaques that solved the tasks showed lesser within-individual variation in their food extraction behavior as compared to those that failed to solve the tasks. -
Macaques ( Macaca Leonina ): Impact on Their Seed Dispersal Effectiveness and Ecological Contribution in a Tropical Rainforest at Khao Yai National Park, Thailand
Faculté des Sciences Département de Biologie, Ecologie et Environnement Unité de Biologie du Comportement, Ethologie et Psychologie Animale Feeding and ranging behavior of northern pigtailed macaques ( Macaca leonina ): impact on their seed dispersal effectiveness and ecological contribution in a tropical rainforest at Khao Yai National Park, Thailand ~ ~ ~ Régime alimentaire et déplacements des macaques à queue de cochon ( Macaca leonina ) : impact sur leur efficacité dans la dispersion des graines et sur leur contribution écologique dans une forêt tropicale du parc national de Khao Yai, Thaïlande Année académique 2011-2012 Dissertation présentée par Aurélie Albert en vue de l’obtention du grade de Docteur en Sciences Faculté des Sciences Département de Biologie, Ecologie et Environnement Unité de Biologie du Comportement, Ethologie et Psychologie Animale Feeding and ranging behavior of northern pigtailed macaques ( Macaca leonina ): impact on their seed dispersal effectiveness and ecological contribution in a tropical rainforest at Khao Yai National Park, Thailand ~ ~ ~ Régime alimentaire et déplacements des macaques à queue de cochon ( Macaca leonina ) : impact sur leur efficacité dans la dispersion des graines et sur leur contribution écologique dans une forêt tropicale du parc national de Khao Yai, Thaïlande Année académique 2011-2012 Dissertation présentée par Aurélie Albert en vue de l’obtention du grade de Docteur en Sciences Promotrice : Marie-Claude Huynen (ULg, Belgique) Comité de thèse : Tommaso Savini (KMUTT, Thaïlande) Alain Hambuckers (ULg, Belgique) Pascal Poncin (ULg, Belgique) Président du jury : Jean-Marie Bouquegneau (ULg, Belgique) Membres du jury : Pierre-Michel Forget (MNHN, France) Régine Vercauteren Drubbel (ULB, Belgique) Roseline C. Beudels-Jamar (IRSN, Belgique) Copyright © 2012, Aurélie Albert Toute reproduction du présent document, par quelque procédé que ce soit, ne peut être réalisée qu’avec l’autorisation de l’auteur et du/des promoteur(s). -
Rhesus Macaques (Macaca Mulatta) Recognize Group Membership Via Olfactory Cues Alone
Behav Ecol Sociobiol (2015) 69:2019–2034 DOI 10.1007/s00265-015-2013-y ORIGINAL ARTICLE Rhesus macaques (Macaca mulatta) recognize group membership via olfactory cues alone Stefanie Henkel 1,2 & Angelina Ruiz Lambides1,3,4 & Anne Berger5 & Ruth Thomsen1,6,7 & Anja Widdig1,3 Received: 9 April 2015 /Revised: 18 September 2015 /Accepted: 21 September 2015 /Published online: 31 October 2015 # Springer-Verlag Berlin Heidelberg 2015 Abstract The ability to distinguish group members from con- paradigm to investigate whether rhesus macaques (Macaca specifics living in other groups is crucial for gregarious spe- mulatta) can discriminate between body odors of female cies. Olfaction is known to play a major role in group recog- group members and females from different social groups. nition and territorial defense in a wide range of mammalian We conducted the study on the research island Cayo Santiago, taxa. Although primates have been typically regarded as Puerto Rico, in the non-mating season and controlled for kin- microsmatic (having a poor sense of smell), increasing evi- ship and familiarity using extensive pedigree and demograph- dence suggests that olfaction may play a greater role in pri- ic data. Our results indicate that both males and females in- mates’ social life than previously assumed. In this study, we spect out-group odors significantly longer than in-group carried out behavioral bioassays using a signaler-receiver odors. Males licked odors more often than females, and older animals licked more often than younger ones. Furthermore, individuals tended to place their nose longer towards odors Communicated by E. Huchard when the odor donor’s group rank was higher than the rank of Electronic supplementary material The online version of this article their own group. -
Macaca Fascicularis) in Thailand
The Natural History Journal of Chulalongkorn University 8(2): 185-204, October 2008 ©2008 by Chulalongkorn University Current Situation and Status of Long-tailed Macaques (Macaca fascicularis) in Thailand SUCHINDA MALAIVIJITNOND1* AND YUZURU HAMADA2 1Primate Research Unit, Department of Biology, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand. 2Section of Morphology, Primate Research Institute, Kyoto University, Inuyama, Japan. ABSTRACT.– Long-tailed macaques (Macaca fascicularis) are the most frequently encountered primate in Thailand. They are currently considered at low risk for extinction, however, they are threatened by habitat fragmentation or loss, inbreeding or outbreeding depression and hybridization. At present, no management measures have been taken and updated information on their situation and status are urgently needed. We sent questionnaires throughout Thailand to a total of 7,410 sub-districts, and received 1,417 (19.12%) replies. We traveled to the sub-districts from which the positive replies to questionnaires on macaques were obtained, from December 2002 to December 2007 and found long-tailed macaques in 74 locations which ranged from the lower northern and northeastern (ca. 16° 30´ N) to the southernmost part (ca. 6° 30´ N) of Thailand. The distribution of long-tailed macaques at present is similar to that reported 30 years ago, but their habitats have changed from natural forests to temples or recreation parks. On average, 200 monkeys per location were counted and some populations had more than 1,000 individuals. In some locations they were regarded as pests. Local authorities took short-term management measures such as translocation and contraception. Although many troops of Thai long- tailed macaques have inflated population densities, some local troops exhibited morphological, genetic and behavioural uniqueness that may be important to conserve. -
A Decade of Theory of Mind Research on Cayo Santiago: Insights Into Rhesus Macaque Social Cognition
American Journal of Primatology REVIEW ARTICLE A Decade of Theory of Mind Research on Cayo Santiago: Insights Into Rhesus Macaque Social Cognition LINDSEY A. DRAYTON* AND LAURIE R. SANTOS Psychology Department, Yale University, New Haven, Connecticut Over the past several decades, researchers have become increasingly interested in understanding how primates understand the behavior of others. One open question concerns whether nonhuman primates think about others’ behavior in psychological terms, that is, whether they have a theory of mind. Over the last ten years, experiments conducted on the free-ranging rhesus monkeys (Macaca mulatta) living on Cayo Santiago have provided important insights into this question. In this review, we highlight what we think are some of the most exciting results of this body of work. Specifically we describe experiments suggesting that rhesus monkeys may understand some psychological states, such as what others see, hear, and know, but that they fail to demonstrate an understanding of others’ beliefs. Thus, while some aspects of theory of mind may be shared between humans and other primates, others capacities are likely to be uniquely human. We also discuss some of the broader debates surrounding comparative theory of mind research, as well as what we think may be productive lines for future research with the rhesus macaques of Cayo Santiago. Am. J. Primatol. © 2014 Wiley Periodicals, Inc. Key words: theory of mind; social cognition; rhesus macaques INTRODUCTION following a discussion of some of our own work, we Few people can observe nonhuman primates for examine some of the broader debates that surround any length of time without being struck by the this area of study and suggest what we believe will be richness of their social lives. -
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Phylogeny and History of the Lost SIV from Crab-Eating Macaques: SIVmfa The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters Citation McCarthy, Kevin R., Welkin E. Johnson, and Andrea Kirmaier. 2016. “Phylogeny and History of the Lost SIV from Crab- Eating Macaques: SIVmfa.” PLoS ONE 11 (7): e0159281. doi:10.1371/journal.pone.0159281. http://dx.doi.org/10.1371/ journal.pone.0159281. Published Version doi:10.1371/journal.pone.0159281 Citable link http://nrs.harvard.edu/urn-3:HUL.InstRepos:29002415 Terms of Use This article was downloaded from Harvard University’s DASH repository, and is made available under the terms and conditions applicable to Other Posted Material, as set forth at http:// nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#LAA RESEARCH ARTICLE Phylogeny and History of the Lost SIV from Crab-Eating Macaques: SIVmfa Kevin R. McCarthy1,2☯¤, Welkin E. Johnson2, Andrea Kirmaier2☯* 1 Program in Virology, Harvard Medical School, Boston, MA, United States of America, 2 Biology Department, Boston College, Chestnut Hill, MA, United States of America ☯ These authors contributed equally to this work. ¤ Current address: Boston Children’s Hospital, Boston, MA, United States of America * [email protected] a11111 Abstract In the 20th century, thirteen distinct human immunodeficiency viruses emerged following independent cross-species transmission events involving simian immunodeficiency viruses (SIV) from African primates. In the late 1900s, pathogenic SIV strains also emerged in the United Sates among captive Asian macaque species following their unintentional infection OPEN ACCESS with SIV from African sooty mangabeys (SIVsmm). -
F a C T S H E
F A C T S H E E T Recent Primate Incidents Demonstrate Risks To Public Health and Safety, Animal Welfare November 2009 (Indiana): A woman was holding her 10-month-old granddaughter near an enclosure where a monkey was kept as a pet. The monkey pulled the hood of the girl’s coat, causing her head to strike the metal cage, and pulled her hair. The child was taken to the hospital and released that night. November 2009 (Tennessee): A capuchin monkey was found on a road. He had escaped from an SUV of a family vacationing in the area while they were eating at a restaurant, and was recaptured. November 2009 (Florida): A macaque monkey was on the loose outside a Pinellas County apartment complex. October 2009 (Kentucky): Authorities found a baboon being kept in the garage of a Kenton County home. The owners said they bought the animal from an Ohio dealer, and they surrendered her to a sanctuary. September 2009 (Florida): Authorities were looking for a pet patas monkey who had escaped from a Marion County home and been on the loose about two months. June 2009 (New Hampshire): An employee of a farm was severely bitten by a macaque monkey after leaving an enclosure unsecured. Macaques often carry Herpes B virus, and research published by the CDC concludes the health risk makes macaques unsuitable as pets. April 2009 (Oregon): A man brought a capuchin monkey in a diaper to a park. A 6-year-old girl approached and the animal jumped on her, causing two puncture wounds below her eye. -
Ranging Pattern in Bonnet Macaque (Macaca Radiata)
Ranging Pattern in Bonnet Macaque (Macaca radiata) A thesis submitted to Indian Institute of Science Education and Research, Pune in partial fulfillment of the requirements for the BS-MS Dual Degree Programme by Karan Chandrakant Gajbe Indian Institute of Science Education and Research Pune Dr. Homi Bhabha Road Pashan, Pune 411008, India April 2018 Supervisor: Dr. H. N. Kumara ©Karan Gajbe 2018 All rights reserved 1 \ 2 DECLARATION I hereby declare that the matter embodied in the report entitled “Ranging pattern in Bonnet macaque (Macaca radiata)” are the results of the work carried out by me at the Department of Conservation Biology, Sálim Ali Center for Ornithology and Natural history (SACON), under the supervision of Dr. H. N. Kumara and the same has not been submitted elsewhere for any other degree. 3 ABSTRACT: Patterns of ranging behavior of a species depend on distribution and abundance of different resources including food resources and roosting trees, further also depend on group size, intergroup encounters, phenology and movements of the group on previous days, season variability and rainfall. If a species is exposed to humans and live commensal with humans, then the degree of provisioning influences their ecology which includes activity and ranging pattern of that species. To understand this phenomenon, I selected Bonnet Macaque (Macaca radiata) as a model organism to understand the ranging pattern where there are developmental activities and alteration to their habitat. For the study, four groups of bonnet macaque were selected from Chamundi Hills, Mysore, Karnataka. I have collected 12:00 hrs of observations for 106 days over 7 non- consecutive months (June 2017- February 2018) of study. -
Hematologic and Serum Biochemical Values in Aged Female Bonnet Macaques (Macaca Radiata) Anesthetized with Ketamine Hydrochloride
Journal of the American Association for Laboratory Animal Science Vol 45, No 2 Copyright 2006 March 2006 by the American Association for Laboratory Animal Science Pages 45-48 Hematologic and Serum Biochemical Values in Aged Female Bonnet Macaques (Macaca radiata) Anesthetized with Ketamine Hydrochloride Ramasamy Venkatesan,1,* Perumal Nagarajan,1 Ravi Sankar Rajaretnam,2 and Subeer S Majumdar1 We investigated the effect of ketamine hydrochloride anesthesia on hematologic and serum biochemical values in 10 aged female bonnet macaques (Macaca radiata) before and 120 min after intramuscular administration of ketamine hydrochloride (15 mg/kg body weight). Ketamine anesthesia caused significant reduction in the total leukocyte count, lymphocyte count, red blood cell count, hemoglobin concentration, packed cell volume, and serum concentrations of glucose, total protein, alkaline phosphatase, calcium, sodium, and potassium. Although the effects of ketamine hydrochloride on hematologic and serum biochemical values have been reported for most of the nonhuman primates, no literature on bonnet macaques is available. These findings will be useful in designing experiments assessing pathologic and toxicologic changes in blood and serum parameters and interpreting data obtained from aged bonnet monkeys. Abbreviations: ALP, alkaline phosphatase; ALT, alanine aminotransferase; AST, aspartate aminotransferase; GLU, glucose; Hb, hemoglobin; PCV, packed cell volume; RBC, red blood cell; TP, total protein; WBC, white blood cell Nonhuman primates, both Old