Hypodematiaceae (H.P
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Alphabetical Lists of the Vascular Plant Families with Their Phylogenetic
Colligo 2 (1) : 3-10 BOTANIQUE Alphabetical lists of the vascular plant families with their phylogenetic classification numbers Listes alphabétiques des familles de plantes vasculaires avec leurs numéros de classement phylogénétique FRÉDÉRIC DANET* *Mairie de Lyon, Espaces verts, Jardin botanique, Herbier, 69205 Lyon cedex 01, France - [email protected] Citation : Danet F., 2019. Alphabetical lists of the vascular plant families with their phylogenetic classification numbers. Colligo, 2(1) : 3- 10. https://perma.cc/2WFD-A2A7 KEY-WORDS Angiosperms family arrangement Summary: This paper provides, for herbarium cura- Gymnosperms Classification tors, the alphabetical lists of the recognized families Pteridophytes APG system in pteridophytes, gymnosperms and angiosperms Ferns PPG system with their phylogenetic classification numbers. Lycophytes phylogeny Herbarium MOTS-CLÉS Angiospermes rangement des familles Résumé : Cet article produit, pour les conservateurs Gymnospermes Classification d’herbier, les listes alphabétiques des familles recon- Ptéridophytes système APG nues pour les ptéridophytes, les gymnospermes et Fougères système PPG les angiospermes avec leurs numéros de classement Lycophytes phylogénie phylogénétique. Herbier Introduction These alphabetical lists have been established for the systems of A.-L de Jussieu, A.-P. de Can- The organization of herbarium collections con- dolle, Bentham & Hooker, etc. that are still used sists in arranging the specimens logically to in the management of historical herbaria find and reclassify them easily in the appro- whose original classification is voluntarily pre- priate storage units. In the vascular plant col- served. lections, commonly used methods are systema- Recent classification systems based on molecu- tic classification, alphabetical classification, or lar phylogenies have developed, and herbaria combinations of both. -
Pdf/A (670.91
Phytotaxa 164 (1): 001–016 ISSN 1179-3155 (print edition) www.mapress.com/phytotaxa/ Article PHYTOTAXA Copyright © 2014 Magnolia Press ISSN 1179-3163 (online edition) http://dx.doi.org/10.11646/phytotaxa.164.1.1 On the monophyly of subfamily Tectarioideae (Polypodiaceae) and the phylogenetic placement of some associated fern genera FA-GUO WANG1, SAM BARRATT2, WILFREDO FALCÓN3, MICHAEL F. FAY4, SAMULI LEHTONEN5, HANNA TUOMISTO5, FU-WU XING1 & MAARTEN J. M. CHRISTENHUSZ4 1Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China. E-mail: [email protected] 2School of Biological and Biomedical Science, Durham University, Stockton Road, Durham, DH1 3LE, United Kingdom. 3Institute of Evolutionary Biology and Environmental Studies, University of Zurich, Winterthurerstrasse 190, 8075 Zurich, Switzerland. 4Jodrell Laboratory, Royal Botanic Gardens, Kew, Richmond, Surrey TW9 4DS, United Kingdom. E-mail: [email protected] (author for correspondence) 5Department of Biology, University of Turku, FI-20014 Turku, Finland. Abstract The fern genus Tectaria has generally been placed in the family Tectariaceae or in subfamily Tectarioideae (placed in Dennstaedtiaceae, Dryopteridaceae or Polypodiaceae), both of which have been variously circumscribed in the past. Here we study for the first time the phylogenetic relationships of the associated genera Hypoderris (endemic to the Caribbean), Cionidium (endemic to New Caledonia) and Pseudotectaria (endemic to Madagascar and Comoros) using DNA sequence data. Based on a broad sampling of 72 species of eupolypods I (= Polypodiaceae sensu lato) and three plastid DNA regions (atpA, rbcL and the trnL-F intergenic spacer) we were able to place the three previously unsampled genera. -
Flora of New Zealand Ferns and Lycophytes Davalliaceae Pj
FLORA OF NEW ZEALAND FERNS AND LYCOPHYTES DAVALLIACEAE P.J. BROWNSEY & L.R. PERRIE Fascicle 22 – OCTOBER 2018 © Landcare Research New Zealand Limited 2018. Unless indicated otherwise for specific items, this copyright work is licensed under the Creative Commons Attribution 4.0 International licence Attribution if redistributing to the public without adaptation: “Source: Manaaki Whenua – Landcare Research” Attribution if making an adaptation or derivative work: “Sourced from Manaaki Whenua – Landcare Research” See Image Information for copyright and licence details for images. CATALOGUING IN PUBLICATION Brownsey, P. J. (Patrick John), 1948– Flora of New Zealand : ferns and lycophytes. Fascicle 22, Davalliaceae / P.J. Brownsey and L.R. Perrie. -- Lincoln, N.Z.: Manaaki Whenua Press, 2018. 1 online resource ISBN 978-0-9 47525-44-6 (pdf) ISBN 978-0-478-34761-6 (set) 1.Ferns -- New Zealand – Identification. I. Perrie, L. R. (Leon Richard). II. Title. III. Manaaki Whenua – Landcare Research New Zealand Ltd. UDC 582.394.742(931) DC 587.30993 DOI: 10.7931/B15W42 This work should be cited as: Brownsey, P.J. & Perrie, L.R. 2018: Davalliaceae. In: Breitwieser, I.; Wilton, A.D. Flora of New Zealand – Ferns and Lycophytes. Fascicle 22. Manaaki Whenua Press, Lincoln. http://dx.doi.org/10.7931/B15W42 Cover image: Davallia griffithiana. Habit of plant, spreading by means of long-creeping rhizomes. Contents Introduction..............................................................................................................................................1 -
A Journal on Taxonomic Botany, Plant Sociology and Ecology Reinwardtia
A JOURNAL ON TAXONOMIC BOTANY, PLANT SOCIOLOGY AND ECOLOGY REINWARDTIA A JOURNAL ON TAXONOMIC BOTANY, PLANT SOCIOLOGY AND ECOLOGY Vol. 13(4): 317 —389, December 20, 2012 Chief Editor Kartini Kramadibrata (Herbarium Bogoriense, Indonesia) Editors Dedy Darnaedi (Herbarium Bogoriense, Indonesia) Tukirin Partomihardjo (Herbarium Bogoriense, Indonesia) Joeni Setijo Rahajoe (Herbarium Bogoriense, Indonesia) Teguh Triono (Herbarium Bogoriense, Indonesia) Marlina Ardiyani (Herbarium Bogoriense, Indonesia) Eizi Suzuki (Kagoshima University, Japan) Jun Wen (Smithsonian Natural History Museum, USA) Managing editor Himmah Rustiami (Herbarium Bogoriense, Indonesia) Secretary Endang Tri Utami Lay out editor Deden Sumirat Hidayat Illustrators Subari Wahyudi Santoso Anne Kusumawaty Reviewers Ed de Vogel (Netherlands), Henk van der Werff (USA), Irawati (Indonesia), Jan F. Veldkamp (Netherlands), Jens G. Rohwer (Denmark), Lauren M. Gardiner (UK), Masahiro Kato (Japan), Marshall D. Sunberg (USA), Martin Callmander (USA), Rugayah (Indonesia), Paul Forster (Australia), Peter Hovenkamp (Netherlands), Ulrich Meve (Germany). Correspondence on editorial matters and subscriptions for Reinwardtia should be addressed to: HERBARIUM BOGORIENSE, BOTANY DIVISION, RESEARCH CENTER FOR BIOLOGY-LIPI, CIBINONG 16911, INDONESIA E-mail: [email protected] REINWARDTIA Vol 13, No 4, pp: 367 - 377 THE NEW PTERIDOPHYTE CLASSIFICATION AND SEQUENCE EM- PLOYED IN THE HERBARIUM BOGORIENSE (BO) FOR MALESIAN FERNS Received July 19, 2012; accepted September 11, 2012 WITA WARDANI, ARIEF HIDAYAT, DEDY DARNAEDI Herbarium Bogoriense, Botany Division, Research Center for Biology-LIPI, Cibinong Science Center, Jl. Raya Jakarta -Bogor Km. 46, Cibinong 16911, Indonesia. E-mail: [email protected] ABSTRACT. WARD AM, W., HIDAYAT, A. & DARNAEDI D. 2012. The new pteridophyte classification and sequence employed in the Herbarium Bogoriense (BO) for Malesian ferns. -
Davallia Denticulata L 1101000110101001210 D
J EDINBURGH UNIVERSITY LIBRARY Shelf Mark __l UniversityH Edinburgh 30150 024493592 Systematic Study on Davalliaceae in Peninsular Malaysia Haja Maideen Kader Maideen Doctor of Philosophy The University of Edinburgh Royal Botanic Garden Edinburgh 2008 Abstract Davalliaceae is a fern family established by A. B. Frank in 1877, based on the genus Davallia. It contains about 150 species in 8-12 genera and is restricted to the Old World tropics and subtropics. They are mostly epiphytes with long creeping fleshy rhizomes covered with peltate scales. In Peninsular Malaysia, the Davallioid ferns belong to Davallia Sm., Humata Cav., Leucostegia C. Presl and Araiostegia Copel. (Parris & Latiff, 1997). This study used morphological, cytological and molecular (three chloroplast regions) data in an attempt to classify Davalliaceae, especially in Peninsular Malaysia. The results presented in this thesis showed moderate to strong support for the paraphyly of genera in Davalliaceae, especially in Peninsular Malaysia. The results were incongruent with the latest classification based on morphology (Nooteboom, 1998) but congruent with a global study based on molecular data. The phylogeny showed that Leucostegia doest not belong to Davalliaceae. Four major clades were recognised in Davalliaceae, namely the Araiostegia Clade (AC); Davallia with two clades: Davallia Clade I (denticulata clade and dimorpha-divaricata clade), Davallia Clade II (scyphularia-solida clade and trichomanoides clade) and the Humata clade (HC). Maximum parsimony and Bayesian analyses of rps4 + rps4-trnS IGS and combined three regions produced congruent topologies, but the topologies ofrbcL and trnL-F region produced only slight differences. The expanded rbcL data also showed that all species were fully resolved without having a separated/regional clade. -
Fern Classification
16 Fern classification ALAN R. SMITH, KATHLEEN M. PRYER, ERIC SCHUETTPELZ, PETRA KORALL, HARALD SCHNEIDER, AND PAUL G. WOLF 16.1 Introduction and historical summary / Over the past 70 years, many fern classifications, nearly all based on morphology, most explicitly or implicitly phylogenetic, have been proposed. The most complete and commonly used classifications, some intended primar• ily as herbarium (filing) schemes, are summarized in Table 16.1, and include: Christensen (1938), Copeland (1947), Holttum (1947, 1949), Nayar (1970), Bierhorst (1971), Crabbe et al. (1975), Pichi Sermolli (1977), Ching (1978), Tryon and Tryon (1982), Kramer (in Kubitzki, 1990), Hennipman (1996), and Stevenson and Loconte (1996). Other classifications or trees implying relationships, some with a regional focus, include Bower (1926), Ching (1940), Dickason (1946), Wagner (1969), Tagawa and Iwatsuki (1972), Holttum (1973), and Mickel (1974). Tryon (1952) and Pichi Sermolli (1973) reviewed and reproduced many of these and still earlier classifica• tions, and Pichi Sermolli (1970, 1981, 1982, 1986) also summarized information on family names of ferns. Smith (1996) provided a summary and discussion of recent classifications. With the advent of cladistic methods and molecular sequencing techniques, there has been an increased interest in classifications reflecting evolutionary relationships. Phylogenetic studies robustly support a basal dichotomy within vascular plants, separating the lycophytes (less than 1 % of extant vascular plants) from the euphyllophytes (Figure 16.l; Raubeson and Jansen, 1992, Kenrick and Crane, 1997; Pryer et al., 2001a, 2004a, 2004b; Qiu et al., 2006). Living euphyl• lophytes, in turn, comprise two major clades: spermatophytes (seed plants), which are in excess of 260 000 species (Thorne, 2002; Scotland and Wortley, Biology and Evolution of Ferns and Lycopliytes, ed. -
Fern Gazette V17 P3 V9.Qxd 01/09/2005 19:13 Page 147
Fern Gazette V17 P3 v9.qxd 01/09/2005 19:13 Page 147 FERN GAZ. 17(3): 147-162. 2005 147 MOLECULAR PHYLOGENETIC STUDY ON DAVALLIACEAE C. TSUTSUMI1* & M. KATO2** 1Department of Biological Sciences, Graduate School of Science, University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan. 2National Science Museum, Department of Botany, 4-1-1 Amakubo, Tsukuba-shi, Ibaraki 305-0005, Japan. (*author for correspondence; Email: [email protected], Fax: 81-29-853-8401; **Email: [email protected]) Key words: Davalliaceae, molecular phylogeny, atpB, rbcL, accD, atpB-rbcL spacer, rbcL-accD spacer, intrafamilial relationship ABSTRACT In previous classifications based on morphological characters, Davalliaceae comprises from four to ten genera, whose concepts differ among authors. This study analyzed a molecular phylogeny of 36 species in five genera. Deduced phylogenetic relationships based on a combined dataset of five continuous chloroplast regions, atpB, rbcL, accD, atpB-rbcL spacer, and rbcL-accD spacer, are incongruent to any previous classifications, and none of the genera are monophyletic. Araiostegia is divided to two clades, one of which is the most basal and includes Davallodes, and the other is nested within the rest of the family. Davallia is divided into three clades, in accordance with three sections classified mainly by scale morphologies, and the clades are separated by the intervention of a clade of Araiostegia, Humata and Scyphularia. Humata and Scyphularia are also paraphyletic. INTRODUCTION Davalliaceae is an epiphytic leptosporangiate fern family. Most species are distributed in the humid tropics of Asia, Australasia, and the Pacific islands, and a few others occur in Europe, Africa and nearby islands. -
Rare and Threatened Pteridophytes of Asia 2. Endangered Species of India — the Higher IUCN Categories
Bull. Natl. Mus. Nat. Sci., Ser. B, 38(4), pp. 153–181, November 22, 2012 Rare and Threatened Pteridophytes of Asia 2. Endangered Species of India — the Higher IUCN Categories Christopher Roy Fraser-Jenkins Student Guest House, Thamel. P.O. Box no. 5555, Kathmandu, Nepal E-mail: [email protected] (Received 19 July 2012; accepted 26 September 2012) Abstract A revised list of 337 pteridophytes from political India is presented according to the six higher IUCN categories, and following on from the wider list of Chandra et al. (2008). This is nearly one third of the total c. 1100 species of indigenous Pteridophytes present in India. Endemics in the list are noted and carefully revised distributions are given for each species along with their estimated IUCN category. A slightly modified update of the classification by Fraser-Jenkins (2010a) is used. Phanerophlebiopsis balansae (Christ) Fraser-Jenk. et Baishya and Azolla filiculoi- des Lam. subsp. cristata (Kaulf.) Fraser-Jenk., are new combinations. Key words : endangered, India, IUCN categories, pteridophytes. The total number of pteridophyte species pres- gered), VU (Vulnerable) and NT (Near threat- ent in India is c. 1100 and of these 337 taxa are ened), whereas Chandra et al.’s list was a more considered to be threatened or endangered preliminary one which did not set out to follow (nearly one third of the total). It should be the IUCN categories until more information realised that IUCN listing (IUCN, 2010) is became available. The IUCN categories given organised by countries and the global rarity and here apply to political India only. -
A Revised Family-Level Classification for Eupolypod II Ferns (Polypodiidae: Polypodiales)
TAXON 61 (3) • June 2012: 515–533 Rothfels & al. • Eupolypod II classification A revised family-level classification for eupolypod II ferns (Polypodiidae: Polypodiales) Carl J. Rothfels,1 Michael A. Sundue,2 Li-Yaung Kuo,3 Anders Larsson,4 Masahiro Kato,5 Eric Schuettpelz6 & Kathleen M. Pryer1 1 Department of Biology, Duke University, Box 90338, Durham, North Carolina 27708, U.S.A. 2 The Pringle Herbarium, Department of Plant Biology, University of Vermont, 27 Colchester Ave., Burlington, Vermont 05405, U.S.A. 3 Institute of Ecology and Evolutionary Biology, National Taiwan University, No. 1, Sec. 4, Roosevelt Road, Taipei, 10617, Taiwan 4 Systematic Biology, Evolutionary Biology Centre, Uppsala University, Norbyv. 18D, 752 36, Uppsala, Sweden 5 Department of Botany, National Museum of Nature and Science, Tsukuba 305-0005, Japan 6 Department of Biology and Marine Biology, University of North Carolina Wilmington, 601 South College Road, Wilmington, North Carolina 28403, U.S.A. Carl J. Rothfels and Michael A. Sundue contributed equally to this work. Author for correspondence: Carl J. Rothfels, [email protected] Abstract We present a family-level classification for the eupolypod II clade of leptosporangiate ferns, one of the two major lineages within the Eupolypods, and one of the few parts of the fern tree of life where family-level relationships were not well understood at the time of publication of the 2006 fern classification by Smith & al. Comprising over 2500 species, the composition and particularly the relationships among the major clades of this group have historically been contentious and defied phylogenetic resolution until very recently. Our classification reflects the most current available data, largely derived from published molecular phylogenetic studies. -
Phytochrome Diversity in Green Plants and the Origin of Canonical Plant Phytochromes
ARTICLE Received 25 Feb 2015 | Accepted 19 Jun 2015 | Published 28 Jul 2015 DOI: 10.1038/ncomms8852 OPEN Phytochrome diversity in green plants and the origin of canonical plant phytochromes Fay-Wei Li1, Michael Melkonian2, Carl J. Rothfels3, Juan Carlos Villarreal4, Dennis W. Stevenson5, Sean W. Graham6, Gane Ka-Shu Wong7,8,9, Kathleen M. Pryer1 & Sarah Mathews10,w Phytochromes are red/far-red photoreceptors that play essential roles in diverse plant morphogenetic and physiological responses to light. Despite their functional significance, phytochrome diversity and evolution across photosynthetic eukaryotes remain poorly understood. Using newly available transcriptomic and genomic data we show that canonical plant phytochromes originated in a common ancestor of streptophytes (charophyte algae and land plants). Phytochromes in charophyte algae are structurally diverse, including canonical and non-canonical forms, whereas in land plants, phytochrome structure is highly conserved. Liverworts, hornworts and Selaginella apparently possess a single phytochrome, whereas independent gene duplications occurred within mosses, lycopods, ferns and seed plants, leading to diverse phytochrome families in these clades. Surprisingly, the phytochrome portions of algal and land plant neochromes, a chimera of phytochrome and phototropin, appear to share a common origin. Our results reveal novel phytochrome clades and establish the basis for understanding phytochrome functional evolution in land plants and their algal relatives. 1 Department of Biology, Duke University, Durham, North Carolina 27708, USA. 2 Botany Department, Cologne Biocenter, University of Cologne, 50674 Cologne, Germany. 3 University Herbarium and Department of Integrative Biology, University of California, Berkeley, California 94720, USA. 4 Royal Botanic Gardens Edinburgh, Edinburgh EH3 5LR, UK. 5 New York Botanical Garden, Bronx, New York 10458, USA. -
The Marattiales and Vegetative Features of the Polypodiids We Now
VI. Ferns I: The Marattiales and Vegetative Features of the Polypodiids We now take up the ferns, order Marattiales - a group of large tropical ferns with primitive features - and subclass Polypodiidae, the leptosporangiate ferns. (See the PPG phylogeny on page 48a: Susan, Dave, and Michael, are authors.) Members of these two groups are spore-dispersed vascular plants with siphonosteles and megaphylls. A. Marattiales, an Order of Eusporangiate Ferns The Marattiales have a well-documented history. They first appear as tree ferns in the coal swamps right in there with Lepidodendron and Calamites. (They will feature in your second critical reading and writing assignment in this capacity!) The living species are prominent in some hot forests, both in tropical America and tropical Asia. They are very like the leptosporangiate ferns (Polypodiids), but they differ in having the common, primitive, thick-walled sporangium, the eusporangium, and in having a distinctive stele and root structure. 1. Living Plants Go with your TA to the greenhouse to view the potted Angiopteris. The largest of the Marattiales, mature Angiopteris plants bear fronds up to 30 feet in length! a.These plants, like all ferns, have megaphylls. These megaphylls are divided into leaflets called pinnae, which are often divided even further. The feather-like design of these leaves is common among the ferns, suggesting that ferns have some sort of narrow definition to the kinds of leaf design they can evolve. b. The leaflets are borne on stem-like axes called rachises, which, as you can see, have swollen bases on some of the plants in the lab. -
Annual Review of Pteridological Research - 2001
Annual Review of Pteridological Research - 2001 Annual Review of Pteridological Research - 2001 Literature Citations All Citations 1. Abramova, L. M. & U. B. Yunusbaev. 2001. Experience in studying synanthropization in the course of pasture disgression in the transural steppes by the transect method. Ekologiya (Moscow) 6: 474-477. [Russian& Equisetum arvense] 2. Acock, P. J., F. J. Rumsey, R. Murphy & I. Bennallick. 2001. Polystichum Xlesliei (P. munitum X setiferum) (Dryopteridaceae: Pteridophyta) described and a second site reported. Fern Gazette 16: 245-251. http://www.nhm.ac.uk/hosted_sites/bps/gazette.htm. 3. Agarwal, N. K. & A. Borah. 2001. On the biodiversity of Bhairab hills of Bongaigaon district of Assam: Part I. Flora. Journal of Economic & Taxonomic Botany 25(2): 247-252. 4. Aguiar, S., J. Amigo, S. Pajaron, E. Pangua, L. G. Quintanilla & C. Ramirez. 2001. Identification and distribution of the endangered fern Blechnum corralense Espinosa. P. 16. In Fern flora Worldwide - threats and responses, an international symposium 23-26 July. University of Surrey, Guildford, UK. [Abstract] 5. Aguraiuja, R. 2001. Study of protected ferns of Estonia in Tallinn Botanic Garden. Studies of the Tallinn Botanic Garden V. Plant and Environment: 85-98. [Estonian] 6. Aguraiuja, R. 2001. Complex study of protected ferns of Estonia to defend natural populations. P. 16. In Fern flora Worldwide - threats and responses, an international symposium 23-26 July. University of Surrey, Guildford, UK. [Abstract] 7. Aguraiuja, R. & M. Liik. 2001. Tallin Botanic Garden in the monitoring program of protected plant species in Estonia (1994- 2000). Studies of the Tallin Botanic Garden V. Plant and Environment.