Oxidative Stress Induces ADAM9 Protein Expression in Human Prostate Cancer Cells

Total Page:16

File Type:pdf, Size:1020Kb

Oxidative Stress Induces ADAM9 Protein Expression in Human Prostate Cancer Cells Research Article Oxidative Stress Induces ADAM9 Protein Expression in Human Prostate Cancer Cells Shian-Ying Sung,1,2 Hiroyuki Kubo,1,6 Katsumi Shigemura,1 Rebecca S. Arnold,4 Sanjay Logani,4 Ruoxiang Wang,1 Hiroyuki Konaka,1 Masayuki Nakagawa,6 Spiro Mousses,7 Mahul Amin,4 Cynthia Anderson,2 Peter Johnstone,2 John A. Petros,1,4 Fray F. Marshall,1 Haiyen E. Zhau,1 and Leland W.K. Chung1,3,5 1Molecular Urology and Therapeutics Program, Department of Urology, 2Department of Radiation Oncology, 3Winship Cancer Institute; Departments of 4Pathology, 5Biochemistry, and Hematology/Oncology, Emory University School of Medicine, Atlanta, Georgia; 6Department of Urology, Faculty of Medicine, Kagoshima University, Kagoshima, Japan; and 7Translational Genomics Research Institute, Gaithersburg, Maryland Abstract and survival of cancer cells (1). Recent data suggest that chronic The ADAM (a disintegrin and metalloprotease) family is a inflammation of the prostate and production of reactive oxygen group of transmembrane proteins containing cell adhesive species (ROS) could contribute to DNA damage and genomic and proteolytic functional domains. Microarray analysis instability, which may facilitate subsequent progression of cancer cells (2). It also has become apparent that oxidative stress such as detected elevated ADAM9 during the transition of human LNCaPprostate cancer cells from an androgen-dependent to toxins, dietary fat consumption, or high level of androgen may be an androgen-independent and metastatic state. Using a important etiologic factors in the development and progression of prostate tissue array (N = 200), the levels of ADAM9 protein prostate cancer (3). Fisher et al (4) showed that oxidative and expression were also elevated in malignant as compared with osmotic stresses on tumor cells increase the shedding of pro- benign prostate tissues. ADAM9 protein expression was found heparin-binding epidermal growth factor (EGF), which is processed in 43% of benign glands with light staining and 87% of by proteins of the ADAM family, specifically ADAM9, ADAM10, and malignant glands with increasing intensity of staining. We ADAM17. There are concomitant inductions of ADAM9 (5) and found that ADAM9 mRNA and protein expressions were ROS (6) in prostate carcinogenesis. It seems that ROS can induce elevated on exposure of human prostate cancer cells to stress expression of the ADAMs via p38 mitogen-activated protein kinase activation (4). The induced ADAM proteins are responsible for conditions such as cell crowding, hypoxia, and hydrogen peroxide. We uncovered an ADAM9-like protein, which is release of processed heparin-binding EGF, which further promotes predominantly induced together with the ADAM9 protein by a cancer cell growth and survival through an EGFR-dependent brief exposure of prostate cancer cells to hydrogen peroxide. mechanism. Induction of ADAM9 protein in LNCaPor C4-2 cells can be Recent studies showed a relationship between the elevation of completely abrogated by the administration of an antioxidant, ADAMs and the progression and metastasis of cancer cells (7–11). ebselen, or genetic transfer of a hydrogen peroxide degrada- Among them, ADAM9 has been shown to possess potent biological tive enzyme, catalase, suggesting that reactive oxygen species activities. The metalloprotease domain of ADAM9 could cleave h a h (ROS) are a common mediator. The induction of ADAM9 by insulin -chain, tumor necrosis factor , gelatin, -casein, and stress can be inhibited by both actinomycin D and cyclohex- fibronectin (12, 13), and induce shedding of EGF, fibroblast growth imide through increased gene transcription and protein factor receptor 2IIIB (14), or heparin-binding EGF-like growth synthesis. In conclusion, intracellular ROS and/or hydrogen factor (4, 15). The disintegrin domain of ADAM9 contains an ECD peroxide, generated by cell stress, regulate ADAM9 expression. (Glu-Cys-Asp) motif, which may mediate cellular adhesion through a h (16) and a h integrins (17). The cytoplasmic tail of ADAM9 ADAM9 could be responsible for supporting prostate cancer 6 1 v 5 cell survival and progression. By decreasing ADAM9 expres- has potential SH3 binding motifs, which have been reported to interact with potentially important regulatory proteins, endophilin sion, we observed apoptotic cell death in prostate cancer cells. h (Cancer Res 2006; 66(19): 9519-26) 1 (SH3GL2), SH3PX1 (18), and mitotic arrest deficient 2 (19). The abilities of ADAM9 to degrade specific extracellular matrix substrates, release active growth factors, interact with key Introduction regulatory factors, and appear in the invasion front of several Prostate cancer progression, invasion, and metastasis are tumor metastases suggest that ADAM9 provokes cancer cell complex processes involving the interplay between cancer cells growth, invasion, and metastasis. This conclusion is further and microenvironment with tight regulations to ensure the growth supported by a recent report where ADAM9 knockdown mice, when crossed with transgenic mice bearing prostate carcinoma, exhibited reduced tumor growth and local invasion (14). Note: S-Y. Sung and H. Kubo contributed equally to this work. In this communication, we show increased ADAM9 expression in Requests for reprints: Shian-Ying Sung, Department of Urology, Emory University prostate cancer cells on androgen-independent progression and by School of Medicine, Suite 5100, Room B5101, 1365B Clifton Road, Atlanta, GA 30322. Phone: 404-778-3663; Fax: 404-778-3675; E-mail: [email protected] or Leland W.K. exposing prostate cancer cells to stress conditions. Our findings on Chung, Molecular Urology and Therapeutics Program, Department of Urology, Emory the roles of ROS in the induction of ADAM9 protein expression University School of Medicine, Atlanta, GA 30322. Phone: 404-778-3672; E-mail: provide a framework for the development of future antioxidant [email protected]. I2006 American Association for Cancer Research. therapies to arrest the growth of clinical human prostate cancer doi:10.1158/0008-5472.CAN-05-4375 and its distant metastasis. www.aacrjournals.org 9519 Cancer Res 2006; 66: (19). October 1, 2006 Downloaded from cancerres.aacrjournals.org on October 1, 2021. © 2006 American Association for Cancer Research. Cancer Research Materials and Methods confluence were treated with different concentrations of H2O2 for 0, 0.5, 1, 2, 4, and 8 hours. In some experiments, ebselen was added to the cells for Cell lines, cell culture, and chemical reagents. The androgen- 30 minutes before exposure to the H O . Cells were cultured and harvested dependent and androgen receptor–positive parental LNCaP human 2 2 4 hours later. To determine whether ebselen could affect ADAM9 expression prostate cancer cell line and its lineage-derived androgen-independent, induced by cell crowding, cells were first cultured under the crowding androgen receptor–positive, metastatic C4-2 and C4-2B sublines were used condition for 48 hours and then treated with ebselen (0.02-20 Amol/L) for for this study. Unless otherwise stated, these cell lines were cultured in 2 hours. T-medium (Invitrogen, Carlsbad, CA) supplemented with 5% fetal bovine ADAM9 expression in clinical prostate cancer specimens. Clinical serum (FBS; Sigma, St. Louis, MO), 100 IU/mL penicillin G, and 100 Ag/mL prostate cancer tissue specimens were obtained following an institution- streptomycin at 37jC under 5% CO . Ebselen (2-phenyl-1, 2-benzisoselena- 2 approved protocol. Paraformaldehyde-fixed, paraffin-embedded tissues zol-3[2H]-one), actinomycin D, or cycloheximide (Sigma) was freshly were deparaffinized and rehydrated. Antigen retrieval was done in citrate reconstituted with DMSO before use. buffer (pH 6) using an electric pressure cooker at 120jC for 5 minutes. The Generation of human prostate cancer cell lines that stably express section was then exposed to 3% H O for 5 minutes to quench endogenous catalase. Construction and overexpression of catalase was done as 2 2 tissue peroxidase Iand then incubated for 30 minutes with the monoclonal previously described (20). In brief, human catalase cDNA was recovered anti-ADAM9 antibody (1:50 dilution). Immunohistochemical staining was from the pCI-neo vector and ligated into the HindIII site of the pZeoSV visualized with the Envision system (DAKO Corporation, Carpinteria, CA) vector. A clone containing the catalase in the sense orientation (pZeoSV/ and the results were independently evaluated by two pathologists (S.L and catalase) was verified by DNA sequencing. Transfection of the cDNA to M.A.). The anti-ADAM9 antibody from R&D Systems has been validated by prostate cancer cells was carried out with Fugene 6 (Roche Applied Science, several other groups to be specific for the detection of ADAM9 protein Indianapolis, IN) according to the instructions of the manufacturer. After expression in pancreatic cancer (8, 22), small-cell lung carcinoma (23), and 2 days, the cells were subcultured into 10-cm plates and treated with hepatic cancer (24). 0.4 mg/mL zeocin (Invitrogen) until individual colonies formed. Short hairpin RNA mediated gene silencing of ADAM9. To determine Quantitative reverse transcription-PCR. Quantitative reverse tran- the potential functions of ADAM9 protein in C4-2 cells, we transfected these scription-PCR (RT-PCR) was done with the iCycler thermal cycler system cells with a predesigned short hairpin RNA (shRNA; Invitrogen), which was (Bio-Rad, Hercules, CA). Total RNA (5 Ag) from cells at 80% to 95% shown to knock down specifically ADAM9
Recommended publications
  • The Endocytic Membrane Trafficking Pathway Plays a Major Role
    View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by University of Liverpool Repository RESEARCH ARTICLE The Endocytic Membrane Trafficking Pathway Plays a Major Role in the Risk of Parkinson’s Disease Sara Bandres-Ciga, PhD,1,2 Sara Saez-Atienzar, PhD,3 Luis Bonet-Ponce, PhD,4 Kimberley Billingsley, MSc,1,5,6 Dan Vitale, MSc,7 Cornelis Blauwendraat, PhD,1 Jesse Raphael Gibbs, PhD,7 Lasse Pihlstrøm, MD, PhD,8 Ziv Gan-Or, MD, PhD,9,10 The International Parkinson’s Disease Genomics Consortium (IPDGC), Mark R. Cookson, PhD,4 Mike A. Nalls, PhD,1,11 and Andrew B. Singleton, PhD1* 1Molecular Genetics Section, Laboratory of Neurogenetics, National Institute on Aging, National Institutes of Health, Bethesda, Maryland, USA 2Instituto de Investigación Biosanitaria de Granada (ibs.GRANADA), Granada, Spain 3Transgenics Section, Laboratory of Neurogenetics, National Institute on Aging, National Institutes of Health, Bethesda, Maryland, USA 4Cell Biology and Gene Expression Section, Laboratory of Neurogenetics, National Institute on Aging, National Institutes of Health, Bethesda, Maryland, USA 5Department of Molecular and Clinical Pharmacology, Institute of Translational Medicine, University of Liverpool, Liverpool, United Kingdom 6Department of Pathophysiology, University of Tartu, Tartu, Estonia 7Computational Biology Group, Laboratory of Neurogenetics, National Institute on Aging, National Institutes of Health, Bethesda, Maryland, USA 8Department of Neurology, Oslo University Hospital, Oslo, Norway 9Department of Neurology and Neurosurgery, Department of Human Genetics, McGill University, Montréal, Quebec, Canada 10Department of Neurology and Neurosurgery, Montreal Neurological Institute, McGill University, Montréal, Quebec, Canada 11Data Tecnica International, Glen Echo, Maryland, USA ABSTRACT studies, summary-data based Mendelian randomization Background: PD is a complex polygenic disorder.
    [Show full text]
  • Evolution of the DAN Gene Family in Vertebrates
    bioRxiv preprint doi: https://doi.org/10.1101/794404; this version posted June 29, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. RESEARCH ARTICLE Evolution of the DAN gene family in vertebrates Juan C. Opazo1,2,3, Federico G. Hoffmann4,5, Kattina Zavala1, Scott V. Edwards6 1Instituto de Ciencias Ambientales y Evolutivas, Facultad de Ciencias, Universidad Austral de Chile, Valdivia, Chile. 2David Rockefeller Center for Latin American Studies, Harvard University, Cambridge, MA 02138, USA. 3Millennium Nucleus of Ion Channels-Associated Diseases (MiNICAD). 4 Department of Biochemistry, Molecular Biology, Entomology, and Plant Pathology, Mississippi State University, Mississippi State, 39762, USA. Cite as: Opazo JC, Hoffmann FG, 5 Zavala K, Edwards SV (2020) Institute for Genomics, Biocomputing, and Biotechnology, Mississippi State Evolution of the DAN gene family in University, Mississippi State, 39762, USA. vertebrates. bioRxiv, 794404, ver. 3 peer-reviewed and recommended by 6 PCI Evolutionary Biology. doi: Department of Organismic and Evolutionary Biology, Harvard University, 10.1101/794404 Cambridge, MA 02138, USA. This article has been peer-reviewed and recommended by Peer Community in Evolutionary Biology Posted: 29 June 2020 doi: 10.24072/pci.evolbiol.100104 ABSTRACT Recommender: Kateryna Makova The DAN gene family (DAN, Differential screening-selected gene Aberrant in Neuroblastoma) is a group of genes that is expressed during development and plays fundamental roles in limb bud formation and digitation, kidney formation and morphogenesis and left-right axis specification.
    [Show full text]
  • Multivariate Analysis Reveals Differentially Expressed Genes
    www.nature.com/scientificreports OPEN Multivariate analysis reveals diferentially expressed genes among distinct subtypes of difuse astrocytic gliomas: diagnostic implications Nerea González‑García1,2, Ana Belén Nieto‑Librero1,2, Ana Luisa Vital3, Herminio José Tao4, María González‑Tablas2,5,6, Álvaro Otero2, Purifcación Galindo‑Villardón1,2, Alberto Orfao2,5,6 & María Dolores Tabernero2,5,6,7* Diagnosis and classifcation of gliomas mostly relies on histopathology and a few genetic markers. Here we interrogated microarray gene expression profles (GEP) of 268 difuse astrocytic gliomas—33 difuse astrocytomas (DA), 52 anaplastic astrocytomas (AA) and 183 primary glioblastoma (GBM)—based on multivariate analysis, to identify discriminatory GEP that might support precise histopathological tumor stratifcation, particularly among inconclusive cases with II–III grade diagnosed, which have diferent prognosis and treatment strategies. Microarrays based GEP was analyzed on 155 difuse astrocytic gliomas (discovery cohort) and validated in another 113 tumors (validation set) via sequential univariate analysis (pairwise comparison) for discriminatory gene selection, followed by nonnegative matrix factorization and canonical biplot for identifcation of discriminatory GEP among the distinct histological tumor subtypes. GEP data analysis identifed a set of 27 genes capable of diferentiating among distinct subtypes of gliomas that might support current histological classifcation. DA + AA showed similar molecular profles with only a few discriminatory genes
    [Show full text]
  • Rabbit Anti-ADAM9/FITC Conjugated Antibody-SL20104R-FITC
    SunLong Biotech Co.,LTD Tel: 0086-571- 56623320 Fax:0086-571- 56623318 E-mail:[email protected] www.sunlongbiotech.com Rabbit Anti-ADAM9/FITC Conjugated antibody SL20104R-FITC Product Name: Anti-ADAM9/FITC Chinese Name: FITC标记的去整合素样金属蛋白酶9抗体 A disintegrin and metalloproteinase domain 9; A disintegrin and metalloproteinase domain 9; ADAM 9 antibody ADAM metallopeptidase domain 9; Cellular disintegrin Alias: related protein; Disintegrin and metalloproteinase domain 9; MCMP; MDC9; Meltrin gamma; Metalloprotease disintegrin cysteine rich protein 9; Mltng; Myeloma cell metalloproteinase; ADAM9_HUMAN. Organism Species: Rabbit Clonality: Polyclonal React Species: Human,Mouse,Rat,Dog,Cow,Rabbit,Sheep, ICC=1:50-200IF=1:50-200 Applications: not yet tested in other applications. optimal dilutions/concentrations should be determined by the end user. Molecular weight: 88kDa Form: Lyophilized or Liquid Concentration: 2mg/1ml immunogen: KLH conjugated synthetic peptide derived from human ADAM9 Lsotype: IgGwww.sunlongbiotech.com Purification: affinity purified by Protein A Storage Buffer: 0.01M TBS(pH7.4) with 1% BSA, 0.03% Proclin300 and 50% Glycerol. Store at -20 °C for one year. Avoid repeated freeze/thaw cycles. The lyophilized antibody is stable at room temperature for at least one month and for greater than a year Storage: when kept at -20°C. When reconstituted in sterile pH 7.4 0.01M PBS or diluent of antibody the antibody is stable for at least two weeks at 2-4 °C. background: This gene encodes a member of the ADAM (a disintegrin and metalloprotease domain) family. Members of this family are membrane-anchored proteins structurally related to Product Detail: snake venom disintegrins, and have been implicated in a variety of biological processes involving cell-cell and cell-matrix interactions, including fertilization, muscle development, and neurogenesis.
    [Show full text]
  • Identification of Differentially Expressed Genes Between Primary Lung Cancer and Lymph Node Metastasis Via Bioinformatic Analysis
    3754 ONCOLOGY LETTERS 18: 3754-3768, 2019 Identification of differentially expressed genes between primary lung cancer and lymph node metastasis via bioinformatic analysis NAN ZHANG and SHAO-WEI ZHANG Department of Thoracic Surgery, The Fourth Hospital of Hebei Medical University, Shijiazhuang, Hebei 050000, P.R. China Received January 10, 2019; Accepted July 12, 2019 DOI: 10.3892/ol.2019.10723 Abstract. Lung cancer (LC), with its high morbidity and cBioPortal. A total of 308 DEGs were identified in the two mortality rates, is one of the most widespread and malignant microarray datasets, which were mainly enriched during neoplasms. Mediastinal lymph node metastasis (MLNM) cellular processes, including the Gene Ontology terms ‘cell’, severely affects postoperative survival of patients with LC. ‘catalytic activity’, ‘molecular function regulator’, ‘signal trans- Additionally, the molecular mechanisms of LC with MLNM ducer activity’ and ‘binding’. The PPI network was composed (MM LC) remain not well understood. To identify the key of 315 edges and 167 nodes. Its significant module had 11 hub biomarkers in its carcinogenesis and development, the data- genes, and high expression of actin β, MYC, arginine vaso- sets GSE23822 and GSE13213 were obtained from the Gene pressin, vesicle associated membrane protein 2 and integrin Expression Omnibus database. The differentially expressed subunit β1, and low expression of NOTCH1, synaptojanin 2 genes (DEGs) were identified, and the Database for Annotation, and intersectin 2 were significantly associated with poor OS. Visualization and Integrated Discovery was used to perform In summary, hub genes and DEGs presented in the present functional annotations of DEGs. Search Tool for the Retrieval study may help identify underlying targets for diagnostic and of Interacting Genes and Cytoscape were utilized to obtain the therapeutic methods for MM LC.
    [Show full text]
  • Integrating Protein Copy Numbers with Interaction Networks to Quantify Stoichiometry in Mammalian Endocytosis
    bioRxiv preprint doi: https://doi.org/10.1101/2020.10.29.361196; this version posted October 29, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. Integrating protein copy numbers with interaction networks to quantify stoichiometry in mammalian endocytosis Daisy Duan1, Meretta Hanson1, David O. Holland2, Margaret E Johnson1* 1TC Jenkins Department of Biophysics, Johns Hopkins University, 3400 N Charles St, Baltimore, MD 21218. 2NIH, Bethesda, MD, 20892. *Corresponding Author: [email protected] bioRxiv preprint doi: https://doi.org/10.1101/2020.10.29.361196; this version posted October 29, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. Abstract Proteins that drive processes like clathrin-mediated endocytosis (CME) are expressed at various copy numbers within a cell, from hundreds (e.g. auxilin) to millions (e.g. clathrin). Between cell types with identical genomes, copy numbers further vary significantly both in absolute and relative abundance. These variations contain essential information about each protein’s function, but how significant are these variations and how can they be quantified to infer useful functional behavior? Here, we address this by quantifying the stoichiometry of proteins involved in the CME network. We find robust trends across three cell types in proteins that are sub- vs super-stoichiometric in terms of protein function, network topology (e.g.
    [Show full text]
  • Genome-Wide Association Studies of Smooth Pursuit and Antisaccade Eye Movements in Psychotic Disorders: findings from the B-SNIP Study
    OPEN Citation: Transl Psychiatry (2017) 7, e1249; doi:10.1038/tp.2017.210 www.nature.com/tp ORIGINAL ARTICLE Genome-wide association studies of smooth pursuit and antisaccade eye movements in psychotic disorders: findings from the B-SNIP study R Lencer1, LJ Mills2, N Alliey-Rodriguez3, R Shafee4,5,AMLee6, JL Reilly7, A Sprenger8, JE McDowell9, SA McCarroll4, MS Keshavan10, GD Pearlson11,12, CA Tamminga13, BA Clementz9, ES Gershon3, JA Sweeney13,14 and JR Bishop6,15 Eye movement deviations, particularly deficits of initial sensorimotor processing and sustained pursuit maintenance, and antisaccade inhibition errors, are established intermediate phenotypes for psychotic disorders. We here studied eye movement measures of 849 participants from the Bipolar-Schizophrenia Network on Intermediate Phenotypes (B-SNIP) study (schizophrenia N = 230, schizoaffective disorder N = 155, psychotic bipolar disorder N = 206 and healthy controls N = 258) as quantitative phenotypes in relation to genetic data, while controlling for genetically derived ancestry measures, age and sex. A mixed-modeling genome-wide association studies approach was used including ~ 4.4 million genotypes (PsychChip and 1000 Genomes imputation). Across participants, sensorimotor processing at pursuit initiation was significantly associated with a single nucleotide polymorphism in IPO8 (12p11.21, P =8×10− 11), whereas suggestive associations with sustained pursuit maintenance were identified with SNPs in SH3GL2 (9p22.2, P =3×10− 8). In participants of predominantly African ancestry, sensorimotor processing was also significantly associated with SNPs in PCDH12 (5q31.3, P = 1.6 × 10 − 10), and suggestive associations were observed with NRSN1 (6p22.3, P = 5.4 × 10 −8) and LMO7 (13q22.2, P = 7.3x10−8), whereas antisaccade error rate was significantly associated with a non-coding region at chromosome 7 (P = 6.5 × 10− 9).
    [Show full text]
  • Supplementary Material Contents
    Supplementary Material Contents Immune modulating proteins identified from exosomal samples.....................................................................2 Figure S1: Overlap between exosomal and soluble proteomes.................................................................................... 4 Bacterial strains:..............................................................................................................................................4 Figure S2: Variability between subjects of effects of exosomes on BL21-lux growth.................................................... 5 Figure S3: Early effects of exosomes on growth of BL21 E. coli .................................................................................... 5 Figure S4: Exosomal Lysis............................................................................................................................................ 6 Figure S5: Effect of pH on exosomal action.................................................................................................................. 7 Figure S6: Effect of exosomes on growth of UPEC (pH = 6.5) suspended in exosome-depleted urine supernatant ....... 8 Effective exosomal concentration....................................................................................................................8 Figure S7: Sample constitution for luminometry experiments..................................................................................... 8 Figure S8: Determining effective concentration .........................................................................................................
    [Show full text]
  • Genomic and Expression Profiling of Human Spermatocytic Seminomas: Primary Spermatocyte As Tumorigenic Precursor and DMRT1 As Candidate Chromosome 9 Gene
    Research Article Genomic and Expression Profiling of Human Spermatocytic Seminomas: Primary Spermatocyte as Tumorigenic Precursor and DMRT1 as Candidate Chromosome 9 Gene Leendert H.J. Looijenga,1 Remko Hersmus,1 Ad J.M. Gillis,1 Rolph Pfundt,4 Hans J. Stoop,1 Ruud J.H.L.M. van Gurp,1 Joris Veltman,1 H. Berna Beverloo,2 Ellen van Drunen,2 Ad Geurts van Kessel,4 Renee Reijo Pera,5 Dominik T. Schneider,6 Brenda Summersgill,7 Janet Shipley,7 Alan McIntyre,7 Peter van der Spek,3 Eric Schoenmakers,4 and J. Wolter Oosterhuis1 1Department of Pathology, Josephine Nefkens Institute; Departments of 2Clinical Genetics and 3Bioinformatics, Erasmus Medical Center/ University Medical Center, Rotterdam, the Netherlands; 4Department of Human Genetics, Radboud University Medical Center, Nijmegen, the Netherlands; 5Howard Hughes Medical Institute, Whitehead Institute and Department of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts; 6Clinic of Paediatric Oncology, Haematology and Immunology, Heinrich-Heine University, Du¨sseldorf, Germany; 7Molecular Cytogenetics, Section of Molecular Carcinogenesis, The Institute of Cancer Research, Sutton, Surrey, United Kingdom Abstract histochemistry, DMRT1 (a male-specific transcriptional regulator) was identified as a likely candidate gene for Spermatocytic seminomas are solid tumors found solely in the involvement in the development of spermatocytic seminomas. testis of predominantly elderly individuals. We investigated these tumors using a genome-wide analysis for structural and (Cancer Res 2006; 66(1): 290-302) numerical chromosomal changes through conventional kar- yotyping, spectral karyotyping, and array comparative Introduction genomic hybridization using a 32 K genomic tiling-path Spermatocytic seminomas are benign testicular tumors that resolution BAC platform (confirmed by in situ hybridization).
    [Show full text]
  • A Network Based Approach to Identify the Genetic Influence Caused By
    bioRxiv preprint doi: https://doi.org/10.1101/482760; this version posted November 30, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. A Network based Approach to Identify the Genetic Influence Caused by Associated Factors and Disorders for the Parkinsons Disease Progression 1st Najmus Sakib 1st Utpala Nanda Chowdhury Dept. of Applied Physics and Electronic Engineering Dept. of Computer Science and Engineering University of Rajshahi University of Rajshahi Rakshahi, Bangladesh Rakshahi, Bangladesh najmus:sakib1995@outlook:com unchowdhury@ru:ac:bd 2nd M. Babul Islam 3rd Julian M.W. Quinn 4th Mohammad Ali Moni Dept. of Applied Physics and Electronic Engg. Bone biology divisions School of Medical Science University of Rajshahi Garvan Institute of Medical Research The University of Sydney Rakshahi, Bangladesh NSW 2010 NSW, Australia babul:apee@ru:ac:bd j:quinn@garvan:org:au mohammad:moni@sydney:edu:au Abstract—Actual causes of Parkinsons disease (PD) are still the central nervous system [1]. It is one of the most common unknown. In any case, a better comprehension of genetic and neurodegenerative problems after Alzheimers illness all over ecological influences to the PD and their interaction will assist the world [2]. The PD is characterized by progressive damage physicians and patients to evaluate individual hazard for the PD, and definitely, there will be a possibility to find a way to of dopaminergic neurons in the substantia nigra pars compacta reduce the progression of the PD.
    [Show full text]
  • Molecular Mechanism of Fast Endophilin-Mediated Endocytosis
    Biochemical Journal (2020) 477 2327–2345 https://doi.org/10.1042/BCJ20190342 Review Article Molecular mechanism of Fast Endophilin-Mediated Endocytosis Alessandra Casamento1 and Emmanuel Boucrot1,2 1Institute of Structural and Molecular Biology, University College London, Gower Street, London WC1E 6BT, U.K.; 2Institute of Structural and Molecular Biology, Birkbeck College, Malet Street, London WC1E 7HX, U.K. Correspondence: Emmanuel Boucrot ([email protected]) Downloaded from https://portlandpress.com/biochemj/article-pdf/477/12/2327/886355/bcj-2019-0342c.pdf by UK user on 14 July 2020 Endocytosis mediates the cellular uptake of micronutrients and cell surface proteins. Clathrin-mediated endocytosis (CME) is the housekeeping pathway in resting cells but additional Clathrin-independent endocytic (CIE) routes, including Fast Endophilin- Mediated Endocytosis (FEME), internalize specific cargoes and support diverse cellular functions. FEME is part of the Dynamin-dependent subgroup of CIE pathways. Here, we review our current understanding of the molecular mechanism of FEME. Key steps are: (i) priming, (ii) cargo selection, (iii) membrane curvature and carrier formation, (iv) mem- brane scission and (v) cytosolic transport. All steps are controlled by regulatory mechan- isms mediated by phosphoinositides and by kinases such as Src, LRRK2, Cdk5 and GSK3β. A key feature of FEME is that it is not constitutively active but triggered upon the stimulation of selected cell surface receptors by their ligands. In resting cells, there is a priming cycle that concentrates Endophilin into clusters on discrete locations of the plasma membrane. In the absence of receptor activation, the patches quickly abort and new cycles are initiated nearby, constantly priming the plasma membrane for FEME.
    [Show full text]
  • Original Article Aberrant Promoter Methylation of SH3GL2 Gene In
    Int J Clin Exp Pathol 2015;8(11):15442-15447 www.ijcep.com /ISSN:1936-2625/IJCEP0016096 Original Article Aberrant promoter methylation of SH3GL2 gene in vulvar squamous cell carcinoma correlates with clinicopathological characteristics and HPV infection status Bo Li, Yinghui He, Xue Han, Shitai Zhang, Yan Xu, Yang Zhou, Zixuan Song, Ling Ouyang Department of Obstetrics and Gynecology, Shengjing Hospital of China Medical University, Shenyang 110004, China Received September 13, 2015; Accepted October 23, 2015; Epub November 1, 2015; Published November 15, 2015 Abstract: Objective: This study attempted to examine the methylation status of SH3GL2 gene in different types of human vulvar lesions and its correlation with clinicopathological parameters. Methods: Immunohistochemical analysis was used to identify the expression status of SH3GL2 in vulvar squamous cell carcinoma (VSCC), vulvar in- traepithelial neoplasia (VIN) and benign vulvar squamous epithelium tissues. Bisulfite genomic sequencing method was used to detect methylation status of the SH3GL2 gene. Clinicopathological correlation of the alterations was analysed by the chi-square tests. Results: Immunohistochemical analysis showed expression of SH3GL2 in VSCC was significantly downregulated than that in VIN and normal vulvar tissues. In accordance with higher frequency of methylation status in SH3GL2, statistical analysis showed methylation status of SH3GL2 was closely related to tumor TNM stage (P=0.003), but not related to age, tumor volume, tumor differentiation, lymph node metastasis and VIN grade. High-methylation status of SH3GL2 showed significant association with HPV infection status. Conclu- sions: Our results indicated that the methylation status of SH3GL2 gene was associated with the TNM staging and HPV infection status of VSCC, suggesting that it might play a synergistic role in the development of VSCC.
    [Show full text]