Page 1 of 48 Systematic Biology 1 Robert S. de Moya 2 Department of Entomology 3 University of Illinois Urbana-Champaign 4 505 S. Goodwin Ave. 5 Urbana, IL 61801 6 For Peer Review OnlyEmail:
[email protected] 7 8 Phylogenomics of parasitic and non-parasitic lice (Insecta: Psocodea): Combining sequence data 9 and Exploring compositional bias solutions in Next Generation Datasets 10 Robert S. de Moya1,2, Kazunori Yoshizawa3, Kimberly K.O. Walden1, Andrew D. Sweet4, 11 Christopher H. Dietrich2, Kevin P. Johnson2 12 1Department of Entomology, University of Illinois Urbana-Champaign, 505 S. Goodwin Ave., 13 Urbana, IL 61801, USA 14 2Illinois Natural History Survey, Prairie Research Institute, University of Illinois, Champaign, IL 15 61820, USA 16 3Systematic Entomology, School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan 17 4Department of Entomology, Purdue University, 901 W. State St., West Lafayette, IN 47907, 18 USA 19 http://mc.manuscriptcentral.com/systbiol Systematic Biology Page 2 of 48 de Moya et al. 20 Abstract 21 22 The insect order Psocodea is a diverse lineage comprising both parasitic (Phthiraptera) 23 and non-parasitic members (Psocoptera). The extreme age and ecological diversity of the group 24 may be associated with major genomic changes, such as base compositional biases expected to 25 affect phylogeneticFor inference. Peer Divergent morphologyReview between Only parasitic and non-parasitic 26 members has also obscured the origins of parasitism within the order. We conducted a 27 phylogenomic analysis on the order Psocodea utilizing both transcriptome and genome 28 sequencing to obtain a data set of 2,370 orthologous genes.