The Influence of Heterotrophy and Flow on Calcification of the Cold-‐Water
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DEEP SEA LEBANON RESULTS of the 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project
DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project March 2018 DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project Citation: Aguilar, R., García, S., Perry, A.L., Alvarez, H., Blanco, J., Bitar, G. 2018. 2016 Deep-sea Lebanon Expedition: Exploring Submarine Canyons. Oceana, Madrid. 94 p. DOI: 10.31230/osf.io/34cb9 Based on an official request from Lebanon’s Ministry of Environment back in 2013, Oceana has planned and carried out an expedition to survey Lebanese deep-sea canyons and escarpments. Cover: Cerianthus membranaceus © OCEANA All photos are © OCEANA Index 06 Introduction 11 Methods 16 Results 44 Areas 12 Rov surveys 16 Habitat types 44 Tarablus/Batroun 14 Infaunal surveys 16 Coralligenous habitat 44 Jounieh 14 Oceanographic and rhodolith/maërl 45 St. George beds measurements 46 Beirut 19 Sandy bottoms 15 Data analyses 46 Sayniq 15 Collaborations 20 Sandy-muddy bottoms 20 Rocky bottoms 22 Canyon heads 22 Bathyal muds 24 Species 27 Fishes 29 Crustaceans 30 Echinoderms 31 Cnidarians 36 Sponges 38 Molluscs 40 Bryozoans 40 Brachiopods 42 Tunicates 42 Annelids 42 Foraminifera 42 Algae | Deep sea Lebanon OCEANA 47 Human 50 Discussion and 68 Annex 1 85 Annex 2 impacts conclusions 68 Table A1. List of 85 Methodology for 47 Marine litter 51 Main expedition species identified assesing relative 49 Fisheries findings 84 Table A2. List conservation interest of 49 Other observations 52 Key community of threatened types and their species identified survey areas ecological importanc 84 Figure A1. -
Comprehensive Phylogenomic Analyses Resolve Cnidarian Relationships and the Origins of Key Organismal Traits
Comprehensive phylogenomic analyses resolve cnidarian relationships and the origins of key organismal traits Ehsan Kayal1,2, Bastian Bentlage1,3, M. Sabrina Pankey5, Aki H. Ohdera4, Monica Medina4, David C. Plachetzki5*, Allen G. Collins1,6, Joseph F. Ryan7,8* Authors Institutions: 1. Department of Invertebrate Zoology, National Museum of Natural History, Smithsonian Institution 2. UPMC, CNRS, FR2424, ABiMS, Station Biologique, 29680 Roscoff, France 3. Marine Laboratory, university of Guam, UOG Station, Mangilao, GU 96923, USA 4. Department of Biology, Pennsylvania State University, University Park, PA, USA 5. Department of Molecular, Cellular and Biomedical Sciences, University of New Hampshire, Durham, NH, USA 6. National Systematics Laboratory, NOAA Fisheries, National Museum of Natural History, Smithsonian Institution 7. Whitney Laboratory for Marine Bioscience, University of Florida, St Augustine, FL, USA 8. Department of Biology, University of Florida, Gainesville, FL, USA PeerJ Preprints | https://doi.org/10.7287/peerj.preprints.3172v1 | CC BY 4.0 Open Access | rec: 21 Aug 2017, publ: 21 Aug 20171 Abstract Background: The phylogeny of Cnidaria has been a source of debate for decades, during which nearly all-possible relationships among the major lineages have been proposed. The ecological success of Cnidaria is predicated on several fascinating organismal innovations including symbiosis, colonial body plans and elaborate life histories, however, understanding the origins and subsequent diversification of these traits remains difficult due to persistent uncertainty surrounding the evolutionary relationships within Cnidaria. While recent phylogenomic studies have advanced our knowledge of the cnidarian tree of life, no analysis to date has included genome scale data for each major cnidarian lineage. Results: Here we describe a well-supported hypothesis for cnidarian phylogeny based on phylogenomic analyses of new and existing genome scale data that includes representatives of all cnidarian classes. -
Coral Injuries Caused by Spirobranchus Opercula with and Without Epibiotic Turf Algae at Curaçao
Marine Biology (2019) 166:60 https://doi.org/10.1007/s00227-019-3504-6 SHORT NOTE Coral injuries caused by Spirobranchus opercula with and without epibiotic turf algae at Curaçao Bert W. Hoeksema1,2 · Dagmar Wels1 · Roeland J. van der Schoot1 · Harry A. ten Hove1 Received: 11 January 2019 / Accepted: 26 March 2019 © The Author(s) 2019 Abstract Reef-dwelling Christmas tree worms (Spirobranchus spp.) are common coral associates. Their calcareous tubes are usually embedded in the coral skeleton and can be closed by an operculum. Tubes not overgrown by coral tissue either remain bare or become covered by algae. Despite their widespread distribution, high abundance and striking appearance, little is known about the impact of these worms on their hosts. We quantifed visible coral damage caused by Spirobranchus in Curaçao (Southern Caribbean) and found that 62.6% of worm opercula (n = 1323) caused abrasions and tissue loss in their hosts. Filamentous turf algae, known to be potentially harmful to corals, covered 76.9% of the opercula. Examination of the six most frequently inhabited host species showed a variation in the damage percentages, although this was independent of the presence of epibiotic algae on 78.4% of all opercula. Since injured corals are more susceptible to diseases, the overall nega- tive impact of Spirobranchus worms on their hosts may be more severe than previously assumed. Introduction and Nishihira 1996), even if the host becomes overgrown by sponges and octocorals, which in turn can act as replacement Coral-dwelling tubeworms of the genus Spirobranchus hosts (Hoeksema et al. 2015, 2016; García-Hernández and (Polychaeta: Serpulidae), known popularly as Christmas Hoeksema 2017). -
The Earliest Diverging Extant Scleractinian Corals Recovered by Mitochondrial Genomes Isabela G
www.nature.com/scientificreports OPEN The earliest diverging extant scleractinian corals recovered by mitochondrial genomes Isabela G. L. Seiblitz1,2*, Kátia C. C. Capel2, Jarosław Stolarski3, Zheng Bin Randolph Quek4, Danwei Huang4,5 & Marcelo V. Kitahara1,2 Evolutionary reconstructions of scleractinian corals have a discrepant proportion of zooxanthellate reef-building species in relation to their azooxanthellate deep-sea counterparts. In particular, the earliest diverging “Basal” lineage remains poorly studied compared to “Robust” and “Complex” corals. The lack of data from corals other than reef-building species impairs a broader understanding of scleractinian evolution. Here, based on complete mitogenomes, the early onset of azooxanthellate corals is explored focusing on one of the most morphologically distinct families, Micrabaciidae. Sequenced on both Illumina and Sanger platforms, mitogenomes of four micrabaciids range from 19,048 to 19,542 bp and have gene content and order similar to the majority of scleractinians. Phylogenies containing all mitochondrial genes confrm the monophyly of Micrabaciidae as a sister group to the rest of Scleractinia. This topology not only corroborates the hypothesis of a solitary and azooxanthellate ancestor for the order, but also agrees with the unique skeletal microstructure previously found in the family. Moreover, the early-diverging position of micrabaciids followed by gardineriids reinforces the previously observed macromorphological similarities between micrabaciids and Corallimorpharia as -
CNIDARIA Corals, Medusae, Hydroids, Myxozoans
FOUR Phylum CNIDARIA corals, medusae, hydroids, myxozoans STEPHEN D. CAIRNS, LISA-ANN GERSHWIN, FRED J. BROOK, PHILIP PUGH, ELLIOT W. Dawson, OscaR OcaÑA V., WILLEM VERvooRT, GARY WILLIAMS, JEANETTE E. Watson, DENNIS M. OPREsko, PETER SCHUCHERT, P. MICHAEL HINE, DENNIS P. GORDON, HAMISH J. CAMPBELL, ANTHONY J. WRIGHT, JUAN A. SÁNCHEZ, DAPHNE G. FAUTIN his ancient phylum of mostly marine organisms is best known for its contribution to geomorphological features, forming thousands of square Tkilometres of coral reefs in warm tropical waters. Their fossil remains contribute to some limestones. Cnidarians are also significant components of the plankton, where large medusae – popularly called jellyfish – and colonial forms like Portuguese man-of-war and stringy siphonophores prey on other organisms including small fish. Some of these species are justly feared by humans for their stings, which in some cases can be fatal. Certainly, most New Zealanders will have encountered cnidarians when rambling along beaches and fossicking in rock pools where sea anemones and diminutive bushy hydroids abound. In New Zealand’s fiords and in deeper water on seamounts, black corals and branching gorgonians can form veritable trees five metres high or more. In contrast, inland inhabitants of continental landmasses who have never, or rarely, seen an ocean or visited a seashore can hardly be impressed with the Cnidaria as a phylum – freshwater cnidarians are relatively few, restricted to tiny hydras, the branching hydroid Cordylophora, and rare medusae. Worldwide, there are about 10,000 described species, with perhaps half as many again undescribed. All cnidarians have nettle cells known as nematocysts (or cnidae – from the Greek, knide, a nettle), extraordinarily complex structures that are effectively invaginated coiled tubes within a cell. -
Articles and Detrital Matter
Biogeosciences, 7, 2851–2899, 2010 www.biogeosciences.net/7/2851/2010/ Biogeosciences doi:10.5194/bg-7-2851-2010 © Author(s) 2010. CC Attribution 3.0 License. Deep, diverse and definitely different: unique attributes of the world’s largest ecosystem E. Ramirez-Llodra1, A. Brandt2, R. Danovaro3, B. De Mol4, E. Escobar5, C. R. German6, L. A. Levin7, P. Martinez Arbizu8, L. Menot9, P. Buhl-Mortensen10, B. E. Narayanaswamy11, C. R. Smith12, D. P. Tittensor13, P. A. Tyler14, A. Vanreusel15, and M. Vecchione16 1Institut de Ciencies` del Mar, CSIC. Passeig Mar´ıtim de la Barceloneta 37-49, 08003 Barcelona, Spain 2Biocentrum Grindel and Zoological Museum, Martin-Luther-King-Platz 3, 20146 Hamburg, Germany 3Department of Marine Sciences, Polytechnic University of Marche, Via Brecce Bianche, 60131 Ancona, Italy 4GRC Geociencies` Marines, Parc Cient´ıfic de Barcelona, Universitat de Barcelona, Adolf Florensa 8, 08028 Barcelona, Spain 5Universidad Nacional Autonoma´ de Mexico,´ Instituto de Ciencias del Mar y Limnolog´ıa, A.P. 70-305 Ciudad Universitaria, 04510 Mexico,` Mexico´ 6Woods Hole Oceanographic Institution, MS #24, Woods Hole, MA 02543, USA 7Integrative Oceanography Division, Scripps Institution of Oceanography, La Jolla, CA 92093-0218, USA 8Deutsches Zentrum fur¨ Marine Biodiversitatsforschung,¨ Sudstrand¨ 44, 26382 Wilhelmshaven, Germany 9Ifremer Brest, DEEP/LEP, BP 70, 29280 Plouzane, France 10Institute of Marine Research, P.O. Box 1870, Nordnes, 5817 Bergen, Norway 11Scottish Association for Marine Science, Scottish Marine Institute, Oban, -
Protected Species Order 2015
Protected Species Order 2015 August 2015 GOVERNMENT OF BERMUDA MINISTRY OF HEALTH, SENIORS AND ENVIRONMENT Department of Conservation Services Protected Species Order 2015 – Protected Species Act 2003 2015 Bermuda and the surrounding reef platform, 1998 Bermuda and the surrounding reef platform, 1998 Protected Species Order 2015 – Protected Species Act 2003 Table of Contents 1.0. Introduction ................................................................................................................................................................................................ 1 Purpose of legislation ...................................................................................................................................................................................... 2 Goal ................................................................................................................................................................................................................. 2 Objectives ........................................................................................................................................................................................................ 2 How species are nominated ............................................................................................................................................................................. 2 Levels of protection for protected species ...................................................................................................................................................... -
Deep-Sea Coral Taxa in the U.S. Northeast Region: Depth and Geographical Distribution (V
Deep-Sea Coral Taxa in the U.S. Northeast Region: Depth and Geographical Distribution (v. 2020) by David B. Packer1, Martha S. Nizinski2, Stephen D. Cairns3, 4 and Thomas F. Hourigan 1. NOAA Habitat Ecology Branch, Northeast Fisheries Science Center, Sandy Hook, NJ 2. NOAA National Systematics Laboratory Smithsonian Institution, Washington, DC 3. National Museum of Natural History, Smithsonian Institution, Washington, DC 4. NOAA Deep Sea Coral Research and Technology Program, Office of Habitat Conservation, Silver Spring, MD This annex to the U.S. Northeast chapter in “The State of Deep-Sea Coral and Sponge Ecosystems of the United States” provides a revised and updated list of deep-sea coral taxa in the Phylum Cnidaria, Class Anthozoa, known to occur in U.S. waters from Maine to Cape Hatteras (Figure 1). Deep-sea corals are defined as azooxanthellate, heterotrophic coral species occurring in waters 50 meters deep or more. Details are provided on the vertical and geographic extent of each species (Table 1). This list is adapted from Packer et al. (2017) with the addition of new species and range extensions into Northeast U.S. waters reported through 2020, along with a number of species previously not included. No new species have been described from this region since 2017. Taxonomic names are generally those currently accepted in the World Register of Marine Species (WoRMS), and are arranged by order, then alphabetically by family, genus, and species. Data sources (references) listed are those principally used to establish geographic and depth distributions. The total number of distinct deep-sea corals documented for the U.S. -
Twenty-Fifth Meeting of the Animals Committee
AC25 Doc. 22 (Rev. 1) Annex 5 (English only / únicamente en inglés / seulement en anglais) Annex 5 Extract of Coral introduction from the ‘Checklist of CITES Species 2008’ (http://www.cites.org/eng/resources/pub/checklist08/index.html). References mentioned in this text can be looked up on the website. CORALS No standard references have been adopted for the coral species listed in the CITES Appendices. Two main references have been used as a basis for the taxonomy of Scleractinia spp., Milleporidae spp. and Stylasteridae spp.: Cairns et al. (1999), supplemented by Veron (2000). Antipatharia spp. have never been the subject of a complete taxonomic revision, although Opresko (1974) provided an incomplete summary. An ongoing revision of the Order by Opresko currently has five parts published (2001-2006), covering the families Aphanipathidae (22 spp.), Cladopathidae (16 spp.), Myriopathidae (32 spp.), Schizopathidae (37 spp.) and Stylopathidae (8 spp.), leaving the Antipathidae (approx. 122 spp.) and the Leiopathidae (6 spp.) to be dealt with. The accepted species of Leiopathidae in the UNEP-WCMC database and most of the accepted species of Antipathidae accord with those accepted by Bisby et al. (2007). A number of species that were not included in the 2005 checklist have been added to the 2008 Checklist. These include species described since 2005; species described before 2005 that were overlooked when producing the 2005 checklist; and species that are now considered to be accepted because of recent taxonomic revisions (Table 1). Others are newly added synonyms (Table 2). A number of other names included in the 2005 checklist have been subsequently modified. -
Coverage Increases of Porites Astreoides in Grenada Determined by Shifts in Size-Frequency Distribution
diversity Article Coverage Increases of Porites astreoides in Grenada Determined by Shifts in Size-Frequency Distribution Ryan G. Eagleson 1,*, John S. Lumsden 1,2, Lorenzo Álvarez-Filip 3 , Christophe M. Herbinger 4 and Ryan A. Horricks 1,2 1 Department of Pathobiology, Ontario Veterinary College, University of Guelph, Guelph, ON N1G 2W1, Canada; [email protected] (J.S.L.); [email protected] (R.A.H.) 2 Department of Pathobiology, School of Veterinary Medicine, St. George’s University, True Blue, St. George’s FZ818, Grenada 3 Biodiversity and Reef Conservation Laboratory, Unidad Académica de Sistemas Arrecifales, Instituto de Ciencias del Mar y Limnología, Universidad Nacional Autónoma de México, Puerto Morelos 77580, Mexico; [email protected] 4 Department of Biology, Dalhousie University, Halifax, NS B3H 4R2, Canada; [email protected] * Correspondence: [email protected] Abstract: Despite coral community collapse, the mustard hill coral (Porites astreoides) is a species currently experiencing success throughout the Caribbean. The inshore reefs of Grenada were selected to study the influence of benthic factors on the abundance, size, and coverage of P. astreoides colonies. Surveys of reef communities along established 30 m transects were conducted at eight sites in 2014 and 2017 using a 0.5 m2 quadrat. Coral Point Count was used to annotate the images, estimating Citation: Eagleson, R.G.; the coverage of scleractinian corals, sponges, algae, and benthic substrates. Coverage, size, and Lumsden, J.S.; Álvarez-Filip, L.; abundance of P. astreoides colonies were quantified using the area measurement tool in ImageJ stan- Herbinger, C.M.; Horricks, R.A. dardized against the quadrats. -
Zootaxa, Caryophylliidae (Scleractinia) from the Colombian
TERMS OF USE This pdf is provided by Magnolia Press for private/research use. Commercial sale or deposition in a public library or website is prohibited. Zootaxa 2262: 1–39 (2009) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2009 · Magnolia Press ISSN 1175-5334 (online edition) Caryophylliidae (Scleractinia) from the Colombian Caribbean JAVIER REYES1, NADIEZHDA SANTODOMINGO1, 2 & STEPHEN CAIRNS3 1 Instituto de Investigaciones Marinas y Costeras, INVEMAR, Cerro de Punta Betín, AA 1016 Santa Marta, Colombia. E-mail: [email protected], [email protected] 2 National Museum of Natural History, Naturalis, PO Box 9517, 2300 RA Leiden, The Netherlands 3 National Museum of Natural History, Washington, D.C. 20013, U.S.A. E-mail: [email protected] Table of contents Abstract ............................................................................................................................................................................... 2 Introduction ......................................................................................................................................................................... 2 Methods ............................................................................................................................................................................... 4 Caryophylliidae Dana, 1846 ................................................................................................................................................ 5 Caryophyllia -
Stony Corals of Glovers Reef Atoll Fire Corals
PICTURE GUIDE TO STONY CORALS OF GLOVERS REEF ATOLL FIRE CORALS BRANCHING FIRE CORAL Millepora alcicornis Crusts, growing out into small round branches. Slender polyps projecting from small pores in smooth skeleton. Color yellow, cream, tan. Stings painfully if touched. BLADED FIRE CORAL Millepora complanata Blade-like branches arising from crusts. Stings painfully if touched. BRANCHING CORALS ELKHORN CORAL Acropora palmata Large, broad, palm-shaped branches in calm waters. More rounded in rough water. Brown to yellowish-brown. Side (radial) polyps small (0.5-0.8 mm). Terminal (axial) polyps larger, white. cervicornis rubble STAGHORN CORAL Acropora cervicornis Open, loosely packed thickets of thin, round, pointed, brown to yellowish-brown branches tipped by one large, white axial polyp. Easily broken, remains often forming rubble beds. FUSED STAGHORN CORAL Acropora prolifera Hybrid of A. palmata & A. cervicornis. Branches densely packed. Brown to golden color. Branching tends toward horizontal and fan-shaped. Branchlets toward branch ends. Page 1 STONY CORALS OF GLOVERS REEF ATOLL CLUB TIP FINGER CORAL Porites porites Branches thick (2 cm or more), curved, hooked or other irregular shapes. Tips blunt, often swollen. Polyps expanded in day, appearing “fuzzy”. Gray, blue, yellowish, or purple. Polyps small. BRANCHED FINGER CORAL Porites furcata Branches compact, thin (1-2 cm), finger-like, usually elongate, rounded tips, bases usually dead. Gray or tan. Polyps small (1.6-1.8 mm). THIN FINGER CORAL Porites divaricata Branches thinnest (less than 1 cm), widely spaced, and often at right angles to main stem. Tips often forked. Purple, brown, yellow-brown, gray. Polyps small. YELLOW PENCIL CORAL Madracis auretenra (formerly Madracis mirabilis) Thin, densely packed, finger-like branches.