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National Monitoring Program for Biodiversity and Non-Indigenous Species in Egypt
UNITED NATIONS ENVIRONMENT PROGRAM MEDITERRANEAN ACTION PLAN REGIONAL ACTIVITY CENTRE FOR SPECIALLY PROTECTED AREAS National monitoring program for biodiversity and non-indigenous species in Egypt PROF. MOUSTAFA M. FOUDA April 2017 1 Study required and financed by: Regional Activity Centre for Specially Protected Areas Boulevard du Leader Yasser Arafat BP 337 1080 Tunis Cedex – Tunisie Responsible of the study: Mehdi Aissi, EcApMEDII Programme officer In charge of the study: Prof. Moustafa M. Fouda Mr. Mohamed Said Abdelwarith Mr. Mahmoud Fawzy Kamel Ministry of Environment, Egyptian Environmental Affairs Agency (EEAA) With the participation of: Name, qualification and original institution of all the participants in the study (field mission or participation of national institutions) 2 TABLE OF CONTENTS page Acknowledgements 4 Preamble 5 Chapter 1: Introduction 9 Chapter 2: Institutional and regulatory aspects 40 Chapter 3: Scientific Aspects 49 Chapter 4: Development of monitoring program 59 Chapter 5: Existing Monitoring Program in Egypt 91 1. Monitoring program for habitat mapping 103 2. Marine MAMMALS monitoring program 109 3. Marine Turtles Monitoring Program 115 4. Monitoring Program for Seabirds 118 5. Non-Indigenous Species Monitoring Program 123 Chapter 6: Implementation / Operational Plan 131 Selected References 133 Annexes 143 3 AKNOWLEGEMENTS We would like to thank RAC/ SPA and EU for providing financial and technical assistances to prepare this monitoring programme. The preparation of this programme was the result of several contacts and interviews with many stakeholders from Government, research institutions, NGOs and fishermen. The author would like to express thanks to all for their support. In addition; we would like to acknowledge all participants who attended the workshop and represented the following institutions: 1. -
Microbiomes of Gall-Inducing Copepod Crustaceans from the Corals Stylophora Pistillata (Scleractinia) and Gorgonia Ventalina
www.nature.com/scientificreports OPEN Microbiomes of gall-inducing copepod crustaceans from the corals Stylophora pistillata Received: 26 February 2018 Accepted: 18 July 2018 (Scleractinia) and Gorgonia Published: xx xx xxxx ventalina (Alcyonacea) Pavel V. Shelyakin1,2, Sofya K. Garushyants1,3, Mikhail A. Nikitin4, Sofya V. Mudrova5, Michael Berumen 5, Arjen G. C. L. Speksnijder6, Bert W. Hoeksema6, Diego Fontaneto7, Mikhail S. Gelfand1,3,4,8 & Viatcheslav N. Ivanenko 6,9 Corals harbor complex and diverse microbial communities that strongly impact host ftness and resistance to diseases, but these microbes themselves can be infuenced by stresses, like those caused by the presence of macroscopic symbionts. In addition to directly infuencing the host, symbionts may transmit pathogenic microbial communities. We analyzed two coral gall-forming copepod systems by using 16S rRNA gene metagenomic sequencing: (1) the sea fan Gorgonia ventalina with copepods of the genus Sphaerippe from the Caribbean and (2) the scleractinian coral Stylophora pistillata with copepods of the genus Spaniomolgus from the Saudi Arabian part of the Red Sea. We show that bacterial communities in these two systems were substantially diferent with Actinobacteria, Alphaproteobacteria, and Betaproteobacteria more prevalent in samples from Gorgonia ventalina, and Gammaproteobacteria in Stylophora pistillata. In Stylophora pistillata, normal coral microbiomes were enriched with the common coral symbiont Endozoicomonas and some unclassifed bacteria, while copepod and gall-tissue microbiomes were highly enriched with the family ME2 (Oceanospirillales) or Rhodobacteraceae. In Gorgonia ventalina, no bacterial group had signifcantly diferent prevalence in the normal coral tissues, copepods, and injured tissues. The total microbiome composition of polyps injured by copepods was diferent. -
Checklist of Fish and Invertebrates Listed in the CITES Appendices
JOINTS NATURE \=^ CONSERVATION COMMITTEE Checklist of fish and mvertebrates Usted in the CITES appendices JNCC REPORT (SSN0963-«OStl JOINT NATURE CONSERVATION COMMITTEE Report distribution Report Number: No. 238 Contract Number/JNCC project number: F7 1-12-332 Date received: 9 June 1995 Report tide: Checklist of fish and invertebrates listed in the CITES appendices Contract tide: Revised Checklists of CITES species database Contractor: World Conservation Monitoring Centre 219 Huntingdon Road, Cambridge, CB3 ODL Comments: A further fish and invertebrate edition in the Checklist series begun by NCC in 1979, revised and brought up to date with current CITES listings Restrictions: Distribution: JNCC report collection 2 copies Nature Conservancy Council for England, HQ, Library 1 copy Scottish Natural Heritage, HQ, Library 1 copy Countryside Council for Wales, HQ, Library 1 copy A T Smail, Copyright Libraries Agent, 100 Euston Road, London, NWl 2HQ 5 copies British Library, Legal Deposit Office, Boston Spa, Wetherby, West Yorkshire, LS23 7BQ 1 copy Chadwick-Healey Ltd, Cambridge Place, Cambridge, CB2 INR 1 copy BIOSIS UK, Garforth House, 54 Michlegate, York, YOl ILF 1 copy CITES Management and Scientific Authorities of EC Member States total 30 copies CITES Authorities, UK Dependencies total 13 copies CITES Secretariat 5 copies CITES Animals Committee chairman 1 copy European Commission DG Xl/D/2 1 copy World Conservation Monitoring Centre 20 copies TRAFFIC International 5 copies Animal Quarantine Station, Heathrow 1 copy Department of the Environment (GWD) 5 copies Foreign & Commonwealth Office (ESED) 1 copy HM Customs & Excise 3 copies M Bradley Taylor (ACPO) 1 copy ^\(\\ Joint Nature Conservation Committee Report No. -
Symbionts and Environmental Factors Related to Deep-Sea Coral Size and Health
Symbionts and environmental factors related to deep-sea coral size and health Erin Malsbury, University of Georgia Mentor: Linda Kuhnz Summer 2018 Keywords: deep-sea coral, epibionts, symbionts, ecology, Sur Ridge, white polyps ABSTRACT We analyzed video footage from a remotely operated vehicle to estimate the size, environmental variation, and epibiont community of three types of deep-sea corals (class Anthozoa) at Sur Ridge off the coast of central California. For all three of the corals, Keratoisis, Isidella tentaculum, and Paragorgia arborea, species type was correlated with the number of epibionts on the coral. Paragorgia arborea had the highest average number of symbionts, followed by Keratoisis. Epibionts were identified to the lowest possible taxonomic level and categorized as predators or commensalists. Around twice as many Keratoisis were found with predators as Isidella tentaculum, while no predators were found on Paragorgia arborea. Corals were also measured from photos and divided into size classes for each type based on natural breaks. The northern sites of the mound supported larger Keratoisis and Isidella tentaculum than the southern portion, but there was no relationship between size and location for Paragorgia arborea. The northern sites of Sur Ridge were also the only place white polyps were found. These polyps were seen mostly on Keratoisis, but were occasionally found on the skeletons of Isidella tentaculum and even Lillipathes, an entirely separate subclass of corals from Keratoisis. Overall, although coral size appears to be impacted by 1 environmental variables and location for Keratoisis and Isidella tentaculum, the presence of symbionts did not appear to correlate with coral size for any of the coral types. -
DEEP SEA LEBANON RESULTS of the 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project
DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project March 2018 DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project Citation: Aguilar, R., García, S., Perry, A.L., Alvarez, H., Blanco, J., Bitar, G. 2018. 2016 Deep-sea Lebanon Expedition: Exploring Submarine Canyons. Oceana, Madrid. 94 p. DOI: 10.31230/osf.io/34cb9 Based on an official request from Lebanon’s Ministry of Environment back in 2013, Oceana has planned and carried out an expedition to survey Lebanese deep-sea canyons and escarpments. Cover: Cerianthus membranaceus © OCEANA All photos are © OCEANA Index 06 Introduction 11 Methods 16 Results 44 Areas 12 Rov surveys 16 Habitat types 44 Tarablus/Batroun 14 Infaunal surveys 16 Coralligenous habitat 44 Jounieh 14 Oceanographic and rhodolith/maërl 45 St. George beds measurements 46 Beirut 19 Sandy bottoms 15 Data analyses 46 Sayniq 15 Collaborations 20 Sandy-muddy bottoms 20 Rocky bottoms 22 Canyon heads 22 Bathyal muds 24 Species 27 Fishes 29 Crustaceans 30 Echinoderms 31 Cnidarians 36 Sponges 38 Molluscs 40 Bryozoans 40 Brachiopods 42 Tunicates 42 Annelids 42 Foraminifera 42 Algae | Deep sea Lebanon OCEANA 47 Human 50 Discussion and 68 Annex 1 85 Annex 2 impacts conclusions 68 Table A1. List of 85 Methodology for 47 Marine litter 51 Main expedition species identified assesing relative 49 Fisheries findings 84 Table A2. List conservation interest of 49 Other observations 52 Key community of threatened types and their species identified survey areas ecological importanc 84 Figure A1. -
Deep‐Sea Coral Taxa in the U.S. Gulf of Mexico: Depth and Geographical Distribution
Deep‐Sea Coral Taxa in the U.S. Gulf of Mexico: Depth and Geographical Distribution by Peter J. Etnoyer1 and Stephen D. Cairns2 1. NOAA Center for Coastal Monitoring and Assessment, National Centers for Coastal Ocean Science, Charleston, SC 2. National Museum of Natural History, Smithsonian Institution, Washington, DC This annex to the U.S. Gulf of Mexico chapter in “The State of Deep‐Sea Coral Ecosystems of the United States” provides a list of deep‐sea coral taxa in the Phylum Cnidaria, Classes Anthozoa and Hydrozoa, known to occur in the waters of the Gulf of Mexico (Figure 1). Deep‐sea corals are defined as azooxanthellate, heterotrophic coral species occurring in waters 50 m deep or more. Details are provided on the vertical and geographic extent of each species (Table 1). This list is adapted from species lists presented in ʺBiodiversity of the Gulf of Mexicoʺ (Felder & Camp 2009), which inventoried species found throughout the entire Gulf of Mexico including areas outside U.S. waters. Taxonomic names are generally those currently accepted in the World Register of Marine Species (WoRMS), and are arranged by order, and alphabetically within order by suborder (if applicable), family, genus, and species. Data sources (references) listed are those principally used to establish geographic and depth distribution. Only those species found within the U.S. Gulf of Mexico Exclusive Economic Zone are presented here. Information from recent studies that have expanded the known range of species into the U.S. Gulf of Mexico have been included. The total number of species of deep‐sea corals documented for the U.S. -
Volume 2. Animals
AC20 Doc. 8.5 Annex (English only/Seulement en anglais/Únicamente en inglés) REVIEW OF SIGNIFICANT TRADE ANALYSIS OF TRADE TRENDS WITH NOTES ON THE CONSERVATION STATUS OF SELECTED SPECIES Volume 2. Animals Prepared for the CITES Animals Committee, CITES Secretariat by the United Nations Environment Programme World Conservation Monitoring Centre JANUARY 2004 AC20 Doc. 8.5 – p. 3 Prepared and produced by: UNEP World Conservation Monitoring Centre, Cambridge, UK UNEP WORLD CONSERVATION MONITORING CENTRE (UNEP-WCMC) www.unep-wcmc.org The UNEP World Conservation Monitoring Centre is the biodiversity assessment and policy implementation arm of the United Nations Environment Programme, the world’s foremost intergovernmental environmental organisation. UNEP-WCMC aims to help decision-makers recognise the value of biodiversity to people everywhere, and to apply this knowledge to all that they do. The Centre’s challenge is to transform complex data into policy-relevant information, to build tools and systems for analysis and integration, and to support the needs of nations and the international community as they engage in joint programmes of action. UNEP-WCMC provides objective, scientifically rigorous products and services that include ecosystem assessments, support for implementation of environmental agreements, regional and global biodiversity information, research on threats and impacts, and development of future scenarios for the living world. Prepared for: The CITES Secretariat, Geneva A contribution to UNEP - The United Nations Environment Programme Printed by: UNEP World Conservation Monitoring Centre 219 Huntingdon Road, Cambridge CB3 0DL, UK © Copyright: UNEP World Conservation Monitoring Centre/CITES Secretariat The contents of this report do not necessarily reflect the views or policies of UNEP or contributory organisations. -
Voestalpine Essential Fish Habitat Assessment for PSD Greenhouse Gas Permit
Essential Fish Habitat Assessment: Texas Project Site voestalpine Stahl GmbH San Patricio County, Texas January 31, 2013 www.erm.com voestalpine Stahl GmbH Essential Fish Habitat Assessment: Texas Project Site January 31, 2013 Project No. 0172451 San Patricio County, Texas Alicia Smith Partner-in-Charge Graham Donaldson Project Manager Travis Wycoff Project Consultant Environmental Resources Management 15810 Park Ten Place, Suite 300 Houston, Texas 77084-5140 T: 281-600-1000 F: 281-600-1001 Texas Registered Engineering Firm F-2393 TABLE OF CONTENTS LIST OF ACRONYMS IV EXECUTIVE SUMMARY VI 1.0 INTRODUCTION 1 1.1 PROPOSED ACTION 1 1.2 AGENCY REGULATIONS 1 1.2.1 Magnuson-Stevens Fishery Conservation and Management Act 1 1.2.1 Essential Fish Habitat Defined 2 2.0 PROJECT DESCRIPTION 4 2.1 PROJECT SCHEDULE 4 2.2 PROJECT LOCATION 4 2.3 SITE DESCRIPTION 5 2.4 SITE HISTORY 7 2.5 EMISSIONS CONTROLS 8 2.6 NOISE 9 2.7 DUST 10 2.8 WATER AND WASTEWATER 10 2.8.1 Water Sourcing and Water Rights 11 2.8.2 Wastewater Discharge 13 3.0 IDENTIFICATION OF THE ACTION AREA 15 3.1 ACTION AREA DEFINED 15 3.2 ACTION AREA DELINEATION METHODOLOGY AND RESULTS 16 3.2.1 Significant Impact Level Dispersion Modeling 16 3.2.2 Other Contaminants 17 4.0 ESSENTIAL FISH HABITAT IN THE VICINITY OF THE PROJECT 19 4.1 SPECIES OF PARTICULAR CONCERN 19 4.1.1 Brown Shrimp 19 4.1.2 Gray Snapper 20 4.1.3 Pink Shrimp 20 4.1.4 Red Drum 20 4.1.5 Spanish Mackerel 21 4.1.6 White Shrimp 21 4.2 HABITAT AREAS OF PARTICULAR CONCERN 22 5.0 ENVIRONMENTAL BASELINE CONDITIONS AND EFFECTS ANALYSIS -
Deep-Sea Coral Taxa in the U. S. Caribbean Region: Depth And
Deep‐Sea Coral Taxa in the U. S. Caribbean Region: Depth and Geographical Distribution By Stephen D. Cairns1 1. National Museum of Natural History, Smithsonian Institution, Washington, DC An update of the status of the azooxanthellate, heterotrophic coral species that occur predominantly deeper than 50 m in the U.S. Caribbean territories is not given in this volume because of lack of significant additional data. However, an updated list of deep‐sea coral species in Phylum Cnidaria, Classes Anthozoa and Hydrozoa, from the Caribbean region (Figure 1) is presented below. Details are provided on depth ranges and known geographic distributions within the region (Table 1). This list is adapted from Lutz & Ginsburg (2007, Appendix 8.1) in that it is restricted to the U. S. territories in the Caribbean, i.e., Puerto Rico, U. S. Virgin Islands, and Navassa Island, not the entire Caribbean and Bahamian region. Thus, this list is significantly shorter. The list has also been reordered alphabetically by family, rather than species, to be consistent with other regional lists in this volume, and authorship and publication dates have been added. Also, Antipathes americana is now properly assigned to the genus Stylopathes, and Stylaster profundus to the genus Stenohelia. Furthermore, many of the geographic ranges have been clarified and validated. Since 2007 there have been 20 species additions to the U.S. territories list (indicated with blue shading in the list), mostly due to unpublished specimens from NMNH collections. As a result of this update, there are now known to be: 12 species of Antipatharia, 45 species of Scleractinia, 47 species of Octocorallia (three with incomplete taxonomy), and 14 species of Stylasteridae, for a total of 118 species found in the relatively small geographic region of U. -
The Earliest Diverging Extant Scleractinian Corals Recovered by Mitochondrial Genomes Isabela G
www.nature.com/scientificreports OPEN The earliest diverging extant scleractinian corals recovered by mitochondrial genomes Isabela G. L. Seiblitz1,2*, Kátia C. C. Capel2, Jarosław Stolarski3, Zheng Bin Randolph Quek4, Danwei Huang4,5 & Marcelo V. Kitahara1,2 Evolutionary reconstructions of scleractinian corals have a discrepant proportion of zooxanthellate reef-building species in relation to their azooxanthellate deep-sea counterparts. In particular, the earliest diverging “Basal” lineage remains poorly studied compared to “Robust” and “Complex” corals. The lack of data from corals other than reef-building species impairs a broader understanding of scleractinian evolution. Here, based on complete mitogenomes, the early onset of azooxanthellate corals is explored focusing on one of the most morphologically distinct families, Micrabaciidae. Sequenced on both Illumina and Sanger platforms, mitogenomes of four micrabaciids range from 19,048 to 19,542 bp and have gene content and order similar to the majority of scleractinians. Phylogenies containing all mitochondrial genes confrm the monophyly of Micrabaciidae as a sister group to the rest of Scleractinia. This topology not only corroborates the hypothesis of a solitary and azooxanthellate ancestor for the order, but also agrees with the unique skeletal microstructure previously found in the family. Moreover, the early-diverging position of micrabaciids followed by gardineriids reinforces the previously observed macromorphological similarities between micrabaciids and Corallimorpharia as -
CNIDARIA Corals, Medusae, Hydroids, Myxozoans
FOUR Phylum CNIDARIA corals, medusae, hydroids, myxozoans STEPHEN D. CAIRNS, LISA-ANN GERSHWIN, FRED J. BROOK, PHILIP PUGH, ELLIOT W. Dawson, OscaR OcaÑA V., WILLEM VERvooRT, GARY WILLIAMS, JEANETTE E. Watson, DENNIS M. OPREsko, PETER SCHUCHERT, P. MICHAEL HINE, DENNIS P. GORDON, HAMISH J. CAMPBELL, ANTHONY J. WRIGHT, JUAN A. SÁNCHEZ, DAPHNE G. FAUTIN his ancient phylum of mostly marine organisms is best known for its contribution to geomorphological features, forming thousands of square Tkilometres of coral reefs in warm tropical waters. Their fossil remains contribute to some limestones. Cnidarians are also significant components of the plankton, where large medusae – popularly called jellyfish – and colonial forms like Portuguese man-of-war and stringy siphonophores prey on other organisms including small fish. Some of these species are justly feared by humans for their stings, which in some cases can be fatal. Certainly, most New Zealanders will have encountered cnidarians when rambling along beaches and fossicking in rock pools where sea anemones and diminutive bushy hydroids abound. In New Zealand’s fiords and in deeper water on seamounts, black corals and branching gorgonians can form veritable trees five metres high or more. In contrast, inland inhabitants of continental landmasses who have never, or rarely, seen an ocean or visited a seashore can hardly be impressed with the Cnidaria as a phylum – freshwater cnidarians are relatively few, restricted to tiny hydras, the branching hydroid Cordylophora, and rare medusae. Worldwide, there are about 10,000 described species, with perhaps half as many again undescribed. All cnidarians have nettle cells known as nematocysts (or cnidae – from the Greek, knide, a nettle), extraordinarily complex structures that are effectively invaginated coiled tubes within a cell. -
Freiberg Online Geoscience FOG Is an Electronic Journal Registered Under ISSN 1434-7512
FOG Freiberg Online Geoscience FOG is an electronic journal registered under ISSN 1434-7512 2021, VOL 58 Broder Merkel & Mandy Hoyer (Eds.) FOG special volume: Proceedings of the 6th European Conference on Scientific Diving 2021 178 pages, 25 contributions Preface We are happy to present the proceedings from the 6th European Conference on Scientific Diving (ECSD), which took place in April 2021 as virtual meeting. The first ECSD took place in Stuttgart, Germany, in 2015. The following conferences were hosted in Kristineberg, Sweden (2016), Funchal, Madeira/Portugal (2017), Orkney, Scotland/UK (2018), and Sopot, Poland (2019), respectively. The 6th ECSD was scheduled for April 2020 but has been postponed due to the Corona pandemic by one year. In total 80 people registered and about 60 participants were online on average during the two days of the meeting (April 21 and 22, 2021). 36 talks and 15 posters were presen-ted and discussed. Some authors and co-authors took advantage of the opportunity to hand in a total of 25 extended abstracts for the proceedings published in the open access journal FOG (Freiberg Online Geoscience). The contributions are categorized into: - Device development - Scientific case studies - Aspects of training scientists to work under water The order of the contributions within these three categories is more or less arbitrary. Please enjoy browsing through the proceedings and do not hesitate to follow up ideas and questions that have been raised and triggered during the meeting. Hopefully, we will meet again in person