Function of the Anal Sacs and Mid-Gut in Mitochondrial Sulphide
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Zootaxa: Systematics of the Genus Scleroplax Rathbun, 1893
Zootaxa 1344: 33–41 (2006) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ ZOOTAXA 1344 Copyright © 2006 Magnolia Press ISSN 1175-5334 (online edition) Systematics of the genus Scleroplax Rathbun, 1893 (Crustacea: Brachyura: Pinnotheridae) ERNESTO CAMPOS Facultad de Ciencias, Universidad Autónoma de Baja California, Apartado Postal 2300, Ensenada, Baja California, 22800 México. E-mail: [email protected]; [email protected] Abstract The taxonomic status of the monotypic genus Scleroplax Rathbun, 1893, is evaluated and separated from other genera of the Pinnixa White, 1846, complex. Distinguishing characters of Scleroplax are a hard, subheptagonal and dorsally, highly convex carapace, and a third maxilliped with a propodus that extends to the end of the dactylus. The genera Scleroplax, Pinnixa, Austinixa Heard & Manning, 1997, Glassella Campos & Wicksten, 1997, Indopinnixa Manning & Morton, 1987, and Tetrias Rathbun, 1898, share a carapace than is wider than long and a distinct lateral exopod lobe on the third maxilliped, all of which may represent monophyletic characters. Updated information on the distribution and hosts of S. granulata Rathbun, 1893, indicate that the species now ranges from Vancouver Island, British Columbia, Canada to El Coyote estuary, Punta Abreojos, Baja California Sur, México. It inhabits burrows of the echiuroid Urechis caupo Fisher & MacGinitie, 1928, and the mud shrimps Neotrypaea californiensis (Dana, 1854), N. gigas (Dana, 1852) (new host record), Upogebia pugettensis (Dana, 1852), and occasionally U. macginiteorum Williams, 1986 (new host record). Key words: Crustacea, Brachyura, Pinnotheridae, Scleroplax, systematics, geographic distribution, new hosts Resumen El estatus taxonómico del género monotípico Scleroplax Rathbun, 1893, es evaluado y separado de otros géneros del complejo Pinnixa White, 1846. -
Molecular Phylogeny of Echiuran Worms (Phylum: Annelida) Reveals Evolutionary Pattern of Feeding Mode and Sexual Dimorphism
Molecular Phylogeny of Echiuran Worms (Phylum: Annelida) Reveals Evolutionary Pattern of Feeding Mode and Sexual Dimorphism Ryutaro Goto1,2*, Tomoko Okamoto2, Hiroshi Ishikawa3, Yoichi Hamamura4, Makoto Kato2 1 Department of Marine Ecosystem Dynamics, Atmosphere and Ocean Research Institute, The University of Tokyo, Kashiwa, Chiba, Japan, 2 Graduate School of Human and Environmental Studies, Kyoto University, Kyoto, Japan, 3 Uwajima, Ehime, Japan, 4 Kure, Hiroshima, Japan Abstract The Echiura, or spoon worms, are a group of marine worms, most of which live in burrows in soft sediments. This annelid- like animal group was once considered as a separate phylum because of the absence of segmentation, although recent molecular analyses have placed it within the annelids. In this study, we elucidate the interfamily relationships of echiuran worms and their evolutionary pattern of feeding mode and sexual dimorphism, by performing molecular phylogenetic analyses using four genes (18S, 28S, H3, and COI) of representatives of all extant echiuran families. Our results suggest that Echiura is monophyletic and comprises two unexpected groups: [Echiuridae+Urechidae+Thalassematidae] and [Bone- lliidae+Ikedidae]. This grouping agrees with the presence/absence of marked sexual dimorphism involving dwarf males and the paired/non-paired configuration of the gonoducts (genital sacs). Furthermore, the data supports the sister group relationship of Echiuridae and Urechidae. These two families share the character of having anal chaetae rings around the posterior trunk as a synapomorphy. The analyses also suggest that deposit feeding is a basal feeding mode in echiurans and that filter feeding originated once in the common ancestor of Urechidae. Overall, our results contradict the currently accepted order-level classification, especially in that Echiuroinea is polyphyletic, and provide novel insights into the evolution of echiuran worms. -
Appendix 1. Bodega Marine Lab Student Reports on Polychaete Biology
Appendix 1. Bodega Marine Lab student reports on polychaete biology. Species names in reports were assigned to currently accepted names. Thus, Ackerman (1976) reported Eupolymnia crescentis, which was recorded as Eupolymnia heterobranchia in spreadsheets of current species (spreadsheets 2-5). Ackerman, Peter. 1976. The influence of substrate upon the importance of tentacular regeneration in the terebellid polychaete EUPOLYMNIA CRESCENTIS with reference to another terebellid polychaete NEOAMPHITRITE ROBUSTA in regard to its respiratory response. Student Report, Bodega Marine Lab, Library. IDS 100 ∗ Eupolymnia heterobranchia (Johnson, 1901) reported as Eupolymnia crescentis Chamberlin, 1919 changed per Lights 2007. Alex, Dan. 1972. A settling survey of Mason's Marina. Student Report, Bodega Marine Lab, Library. Zoology 157 Alexander, David. 1976. Effects of temperature and other factors on the distribution of LUMBRINERIS ZONATA in the substratum (Annelida: polychaeta). Student Report, Bodega Marine Lab, Library. IDS 100 Amrein, Yost. 1949. The holdfast fauna of MACROSYSTIS INTEGRIFOLIA. Student Report, Bodega Marine Lab, Library. Zoology 112 ∗ Platynereis bicanaliculata (Baird, 1863) reported as Platynereis agassizi Okuda & Yamada, 1954. Changed per Lights 1954 (2nd edition). ∗ Naineris dendritica (Kinberg, 1867) reported as Nanereis laevigata (Grube, 1855) (should be: Naineris laevigata). N. laevigata not in Hartman 1969 or Lights 2007. N. dendritica taken as synonymous with N. laevigata. ∗ Hydroides uncinatus Fauvel, 1927 correct per I.T.I.S. although Hartman 1969 reports Hydroides changing to Eupomatus. Lights 2007 has changed Eupomatus to Hydroides. ∗ Dorvillea moniloceras (Moore, 1909) reported as Stauronereis moniloceras (Moore, 1909). (Stauronereis to Dorvillea per Hartman 1968). ∗ Amrein reported Stylarioides flabellata, which was not recognized by Hartman 1969, Lights 2007 or the Integrated Taxonomic Information System (I.T.I.S.). -
Anti-BACE1 and Antimicrobial Activities of Steroidal Compounds Isolated from Marine Urechis Unicinctus
marine drugs Article Anti-BACE1 and Antimicrobial Activities of Steroidal Compounds Isolated from Marine Urechis unicinctus Yong-Zhe Zhu 1, Jing-Wen Liu 1, Xue Wang 2, In-Hong Jeong 3, Young-Joon Ahn 4 and Chuan-Jie Zhang 5,* ID 1 College of Chemistry and Pharmaceutical Science, Qingdao Agricultural University, Changcheng Rd, Chengyang district, Qingdao 266109, China; [email protected] (Y.-Z.Z.); [email protected] (J.-W.L.) 2 School of Pharmaceutical Sciences, Wenzhou Medical University, Wenzhou 325035, China; [email protected] 3 Division of Crop Protection, National Institute of Agricultural Science, Rural Development Administration, Jeollabuk-do 55365, Korea; [email protected] 4 Department of Agricultural Biotechnology, Seoul National University, 599 Gwanak-ro, Silim-dong, Gwanak-Gu, Seoul 151742, Korea; [email protected] 5 Department of Plant Science, University of Connecticut, 1376 Storrs Road, U-4163, Storrs, CT 06269, USA * Correspondence: [email protected]; Tel.: +1-860-486-2924 Received: 27 December 2017; Accepted: 12 March 2018; Published: 14 March 2018 Abstract: The human β-site amyloid cleaving enzyme (BACE1) has been considered as an effective drug target for treatment of Alzheimer’s disease (AD). In this study, Urechis unicinctus (U. unicinctus), which is a Far East specialty food known as innkeeper worm, ethanol extract was studied by bioassay-directed fractionation and isolation to examine its potential β-site amyloid cleaving enzyme inhibitory and antimicrobial activity. The following compounds were characterized: hecogenin, cholest-4-en-3-one, cholesta-4,6-dien-3-ol, and hurgadacin. These compounds were identified by their mass spectrometry, 1H, and 13C NMR spectral data, comparing those data with NIST/EPA/NIH Mass spectral database (NIST11) and published values. -
Intertidal Organisms of Point Reyes National Seashore
Intertidal Organisms of Point Reyes National Seashore PORIFERA: sea sponges. CRUSTACEANS: barnacles, shrimp, crabs, and allies. CNIDERIANS: sea anemones and allies. MOLLUSKS : abalones, limpets, snails, BRYOZOANS: moss animals. clams, nudibranchs, chitons, and octopi. ECHINODERMS: sea stars, sea cucumbers, MARINE WORMS: flatworms, ribbon brittle stars, sea urchins. worms, peanut worms, segmented worms. UROCHORDATES: tunicates. Genus/Species Common Name Porifera Prosuberites spp. Cork sponge Leucosolenia eleanor Calcareous sponge Leucilla nuttingi Little white sponge Aplysilla glacialis Karatose sponge Lissodendoryx spp. Skunk sponge Ophlitaspongia pennata Red star sponge Haliclona spp. Purple haliclona Leuconia heathi Sharp-spined leuconia Cliona celata Yellow-boring sponge Plocarnia karykina Red encrusting sponge Hymeniacidon spp. Yellow nipple sponge Polymastia pachymastia Polymastia Cniderians Tubularia marina Tubularia hydroid Garveia annulata Orange-colored hydroid Ovelia spp. Obelia Sertularia spp. Sertularia Abientinaria greenii Green's bushy hydroid Aglaophenia struthionides Giant ostrich-plume hydroid Aglaophenia latirostris Dainty ostrich-plume hydroid Plumularia spp. Plumularia Pleurobrachia bachei Cat's eye Polyorchis spp. Bell-shaped jellyfish Chrysaora melanaster Striped jellyfish Velella velella By-the-wind-sailor Aurelia auria Moon jelly Epiactus prolifera Proliferating anemone Anthopleura xanthogrammica Giant green anemone Anthopleura artemissia Aggregated anemone Anthopleura elegantissima Burrowing anemone Tealia lofotensis -
Symbiotic Polychaetes: Review of Known Species
Martin, D. & Britayev, T.A., 1998. Oceanogr. Mar. Biol. Ann. Rev. 36: 217-340. Symbiotic Polychaetes: Review of known species D. MARTIN (1) & T.A. BRITAYEV (2) (1) Centre d'Estudis Avançats de Blanes (CSIC), Camí de Santa Bàrbara s/n, 17300-Blanes (Girona), Spain. E-mail: [email protected] (2) A.N. Severtzov Institute of Ecology and Evolution (RAS), Laboratory of Marine Invertebrates Ecology and Morphology, Leninsky Pr. 33, 129071 Moscow, Russia. E-mail: [email protected] ABSTRACT Although there have been numerous isolated studies and reports of symbiotic relationships of polychaetes and other marine animals, the only previous attempt to provide an overview of these phenomena among the polychaetes comes from the 1950s, with no more than 70 species of symbionts being very briefly treated. Based on the available literature and on our own field observations, we compiled a list of the mentions of symbiotic polychaetes known to date. Thus, the present review includes 292 species of commensal polychaetes from 28 families involved in 713 relationships and 81 species of parasitic polychaetes from 13 families involved in 253 relationships. When possible, the main characteristic features of symbiotic polychaetes and their relationships are discussed. Among them, we include systematic account, distribution within host groups, host specificity, intra-host distribution, location on the host, infestation prevalence and intensity, and morphological, behavioural and/or physiological and reproductive adaptations. When appropriate, the possible -
Determination of the Biologically Relevant Sampling Depth for Terrestrial and Aquatic Ecological Risk Assessments
EPA/600/R-15/176 ERASC-015F October 2015 DETERMINATION OF THE BIOLOGICALLY RELEVANT SAMPLING DEPTH FOR TERRESTRIAL AND AQUATIC ECOLOGICAL RISK ASSESSMENTS Ecological Risk Assessment Support Center National Center for Environmental Assessment Office of Research and Development U.S. Environmental Protection Agency Cincinnati, OH NOTICE This document has been subjected to the Agency’s peer and administrative review and has been approved for publication as an EPA document. Mention of trade names or commercial products does not constitute endorsement or recommendation for use. Cover art on left-hand side is an adaptation of illustrations in two Soil Quality Information Sheets published by the USDA, Natural Resources Conservation Service in May 2001: 1) Rangeland Sheet 6, Rangeland Soil Quality—Organic Matter, and 2) Rangeland Sheet 8, Rangeland Soil Quality—Soil Biota. Cover art on right-hand side is an adaptation of an illustration from Life in the Chesapeake Bay, by Alice Jane Lippson and Robert L. Lippson, published by Johns Hopkins University Press, 2715 North Charles Street, Baltimore, MD 21218. Preferred Citation: U.S. EPA (U.S. Environmental Protection Agency). 2015. Determination of the Biologically Relevant Sampling Depth for Terrestrial and Aquatic Ecological Risk Assessments. National Center for Environmental Assessment, Ecological Risk Assessment Support Center, Cincinnati, OH. EPA/600/R-15/176. ii TABLE OF CONTENTS LIST OF TABLES ........................................................................................................................ -
Settlement and Metamorphosis in the Echiura: a Review
Copyright 1978 by Elsevier/North-Holland Biomedical Press Chia/Rice, eds. Settlement and Metamorphosis of Marine Invertebrate Larvae. SETTLEMENT AND METAMORPHOSIS IN THE ECHIURA: A REVIEW John Pilger Smithsonian Institution, Fort Pierce Bureau, Route 1, Box 194-C, Fort Pierce, Florida 33450 Two types of settlement and metamorphosis are distinguished. Males of the family Bonellidae have specialized attachment structures used during settlement; they undergo an abbreviated, neotenic metamorphosis. Information on settlement of echiurans other than bon ell ids is limited. Metamorphosis of the trochophore proceeds through the loss of trochal bands and protonephridia, as well as the transformation of the gastrointestinal valve and the pre- and posttrochallobes into adult structures. The phenomenon of sex determination in the Bonellidae is reviewed. INTRODUCTION Echiurans occur in benthic habitats in shallow subtidal to hadal ocean depths1 and in some areas, they represent a significant component of the benthic community.2,3 Filter feeding spe cies such as Urechis caupo are important in their ability to direct planktonic energy to the marine benthos.4 Most echiurans feed on the nutrients in deposited sediments and thus playa major role in recycling energy in benthic communitit:s.5 The Echiura are suitable subjects for the study of reproduction and development.6 Early workers described the development of species in the genera Echiurus,7,8 Bonellia9,10,1l and Lissomyema (as Thalassema).12 The detailed work of Newby 13 ,14 on Urechis caupo added to the knowledge of echiuran development. Recent investigations have dealt primarily with the cyto logical, ultrastructural, and biochemical aspects of gametogenesis (see Gould-Somerol5 for a re view). -
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Vol. 13: 211–224, 2021 AQUACULTURE ENVIRONMENT INTERACTIONS Published May 27 https://doi.org/10.3354/aei00395 Aquacult Environ Interact OPEN ACCESS Intestinal microbial diversity and functional analysis of Urechis unicinctus from two different habitats: pond polycultured with Penaeus japonicus and coastal zone Yongzheng Tang1, Shuai Ma1, Yihao Liu2, Yongrui Pi1,*,Ying Liu1, Ye Zhao1 1School of Ocean, Yantai University, Yantai 264005, PR China 2Shandong Key Laboratory of Marine Ecological Restoration, Shandong Marine Source and Environment Research Institute, Yantai 264006, PR China ABSTRACT: Urechis unicinctus is an important commercial and ecological invertebrate that has potential applications in the study of marine invertebrate evolution and marine pharmaceutical development. Here we analyzed the intestinal microbial diversity of U. unicinctus from 2 different habitats using 16S rDNA 454 high-throughput sequencing. The dominant phyla were Proteo - bacteria, Bacterioidetes, Firmicutes, and Actinobacteria in gut samples of U. unicinctus, which significantly differed from those in its 2 habitats (i.e. intertidal mudflat and pond polyculture). Exceptions were Proteobacteria, Firmicutes and Bacterioidetes, which were the dominant phyla in the sediment and water samples. The top 15 genera in the gut samples did not show any signifi- cant differences between the 2 habitats. Functional analysis of the intestinal microbial community showed that metabolism, including carbohydrate and amino acid metabolism, was the most important function. Methane metabolism was one of the main components of energy metabolism. The gut microbes also played an important role in environmental and genetic information pro- cessing, cellular processes, etc. These findings provide an understanding of gut microbiome com- position and diversity in U. -
Urechis Unicinctus
Hou et al. BMC Genomics (2020) 21:892 https://doi.org/10.1186/s12864-020-07312-4 RESEARCH ARTICLE Open Access Identification of the neuropeptide precursor genes potentially involved in the larval settlement in the Echiuran worm Urechis unicinctus Xitan Hou1, Zhenkui Qin1, Maokai Wei1, Zhong Fu3, Ruonan Liu4,LiLu1, Shumiao Bai1, Yubin Ma1* and Zhifeng Zhang1,2* Abstract Background: In marine invertebrate life cycles, which often consist of planktonic larval and benthonic adult stages, settlement of the free-swimming larva to the sea floor in response to environmental cues is a key life cycle transition. Settlement is regulated by a specialized sensory–neurosecretory system, the larval apical organ. The neuroendocrine mechanisms through which the apical organ transduces environmental cues into behavioral responses during settlement are not fully understood yet. Results: In this study, a total of 54 neuropeptide precursors (pNPs) were identified in the Urechis unicinctus larva and adult transcriptome databases using local BLAST and NpSearch prediction, of which 10 pNPs belonging to the ancient eumetazoa, 24 pNPs belonging to the ancient bilaterian, 3 pNPs belonging to the ancient protostome, 9 pNPs exclusive in lophotrochozoa, 3 pNPs exclusive in annelid, and 5 pNPs only found in U. unicinctus.Furthermore,four pNPs (MIP, FRWamide, FxFamide and FILamide) which may be associated with the settlement and metamorphosis of U. unicinctus larvae were analysed by qRT-PCR. Whole-mount in situ hybridization results showed that all the four pNPs were expressed in the region of the apical organ of the larva, and the positive signals were also detected in the ciliary band and abdomen chaetae. -
Urechis Unicinctus by Digital Gene Expression Analysis Xiaolong Liu†, Litao Zhang†, Zhifeng Zhang*, Xiaoyu Ma and Jianguo Liu
Liu et al. BMC Genomics (2015) 16:829 DOI 10.1186/s12864-015-2094-z RESEARCH ARTICLE Open Access Transcriptional response to sulfide in the Echiuran Worm Urechis unicinctus by digital gene expression analysis Xiaolong Liu†, Litao Zhang†, Zhifeng Zhang*, Xiaoyu Ma and Jianguo Liu Abstract Background: Urechis unicinctus, an echiuran worm inhabiting the U-shaped burrows in the coastal mud flats, is an important commercial and ecological invertebrate in Northeast Asian countries, which has potential applications in the study of animal evolution, coastal sediment improvement and marine drug development. Furthermore, the worm can tolerate and utilize well-known toxicant-sulfide. However, knowledge is limited on the molecular mechanism of U. unicinctus responding to sulfide due to deficiency of its genetic information. Methods: In this study, we performed Illumina sequencing to obtain the first Urechis unicinctus transcriptome data. Sequenced reads were assembled and then annotated using blast searches against Nr, Nt, Swiss-Prot, KEGG and COG. The clean tags from four digital gene expression (DGE) libraries were mapped to the U. unicinctus transcriptome. DGE analysis and functional annotation were then performed to reveal its response to sulfide. The expressions of 12 candidate genes were validated using quantitative real-time PCR. The results of qRT-PCR were regressed against the DGE analysis, with a correlation coefficient and p-value reported for each of them. Results: Here we first present a draft of U. unicinctus transcriptome using the Illumina HiSeqTM 2000 platform and 52,093 unique sequences were assembled with the average length of 738 bp and N50 of 1131 bp. About 51.6 % of the transcriptome were functionally annotated based on the databases of Nr, Nt, Swiss-Prot, KEGG and COG. -
Fauna of Australia 4A Polychaetes & Allies, Echiura
FAUNA of AUSTRALIA Volume 4A POLYCHAETES & ALLIES The Southern Synthesis 4. PHYLUM ECHIURA STANLEY J. EDMONDS (Deceased 16 July 1995) © Commonwealth of Australia 2000. All material CC-BY unless otherwise stated. At night, Eunice Aphroditois emerges from its burrow to feed. Photo by Roger Steene DEFINITION AND GENERAL A DESCRIPTION The phylum Echiura comprises a group of non- segmented, coelomate, bilaterally symmetrical, worm-like marine invertebrates. Echiurans have a sausage-shaped muscular trunk and an anteriorly placed extensible proboscis (Fig. 4.1; Pls 11.1–11.6). They are commonly known as spoon worms, a name derived from the function of the proboscis which, in most species, is used to collect sediment from around the burrow. The saccular trunk is usually light to dark green in B colour, or sometimes, reddish brown, and usually bears numerous flat or swollen glandular and sensory papillae. A pair of golden-brown chaetae is usually present on the ventral surface of the trunk, just posterior to the mouth (Fig. 4.2). In a few species a number of chaetae may form a complex; in others, chaetae are absent. One or two almost complete rings of larger anal chaetae surround the posterior region of the trunk in Urechis and Echiurus, respectively. The proboscis is usually flattened and ribbon-like, but may be fleshy and spatulate. It is highly extensible and C contractile, but cannot be withdrawn into the body cavity like the introvert of sipunculans. The distal end of the proboscis is usually truncate or bifid (Fig. 4.1C). In some deep-sea species the proboscis is modified considerably and assists in the collection of food.