Brachyura: the True Crahs John S
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A Classification of Living and Fossil Genera of Decapod Crustaceans
RAFFLES BULLETIN OF ZOOLOGY 2009 Supplement No. 21: 1–109 Date of Publication: 15 Sep.2009 © National University of Singapore A CLASSIFICATION OF LIVING AND FOSSIL GENERA OF DECAPOD CRUSTACEANS Sammy De Grave1, N. Dean Pentcheff 2, Shane T. Ahyong3, Tin-Yam Chan4, Keith A. Crandall5, Peter C. Dworschak6, Darryl L. Felder7, Rodney M. Feldmann8, Charles H. J. M. Fransen9, Laura Y. D. Goulding1, Rafael Lemaitre10, Martyn E. Y. Low11, Joel W. Martin2, Peter K. L. Ng11, Carrie E. Schweitzer12, S. H. Tan11, Dale Tshudy13, Regina Wetzer2 1Oxford University Museum of Natural History, Parks Road, Oxford, OX1 3PW, United Kingdom [email protected] [email protected] 2Natural History Museum of Los Angeles County, 900 Exposition Blvd., Los Angeles, CA 90007 United States of America [email protected] [email protected] [email protected] 3Marine Biodiversity and Biosecurity, NIWA, Private Bag 14901, Kilbirnie Wellington, New Zealand [email protected] 4Institute of Marine Biology, National Taiwan Ocean University, Keelung 20224, Taiwan, Republic of China [email protected] 5Department of Biology and Monte L. Bean Life Science Museum, Brigham Young University, Provo, UT 84602 United States of America [email protected] 6Dritte Zoologische Abteilung, Naturhistorisches Museum, Wien, Austria [email protected] 7Department of Biology, University of Louisiana, Lafayette, LA 70504 United States of America [email protected] 8Department of Geology, Kent State University, Kent, OH 44242 United States of America [email protected] 9Nationaal Natuurhistorisch Museum, P. O. Box 9517, 2300 RA Leiden, The Netherlands [email protected] 10Invertebrate Zoology, Smithsonian Institution, National Museum of Natural History, 10th and Constitution Avenue, Washington, DC 20560 United States of America [email protected] 11Department of Biological Sciences, National University of Singapore, Science Drive 4, Singapore 117543 [email protected] [email protected] [email protected] 12Department of Geology, Kent State University Stark Campus, 6000 Frank Ave. -
(Malacostraca,Decapoda, Brachyura) 2003年12月作成: 2012年1月一部更新: 2018年2月~一部更新中
Catalogue of Brachyuran and Anomuran crabs Collection Donated by the Mr. Seiji Nagai to the Wakayama Prefectural Museum of Natural History 和歌山県立自然博物館所蔵 永井コレクション甲殻類標本目録(短尾類) (Malacostraca,Decapoda, Brachyura) 2003年12月作成: 2012年1月一部更新: 2018年2月~一部更新中 Specimen Number Infraorder Family Genus Species Author Year Japanese Name Locality Remarks (WMNH-Na-Cr **** ) Brachyura Homolodromiidae Dicranodromia aff. baffini (Alcock & Anderson) 1899 タンモウコウなガカムリ 静岡県沖, トロール, 水深300m, (1 新称 0002 1 短尾下目 コウナガカムリ科 ♀) Brachyura Homolodromiidae Dicranodromia crosnieri Guinot 1995 クロニエコウナガカムリ 和歌山県潮岬沖, 水深650m, 199 新称 0004 2 短尾下目 コウナガカムリ科 9. Nov.12., (1♀) Brachyura Homolodromiidae Dicranodromia doederleini Ortmann 1892 コウナガカムリ 神奈川県剣崎東方, 水深200m, 19 0001 3 短尾下目 コウナガカムリ科 90.,(1♀);豊後水道, 水深400m, 1 997., (1♀) Brachyura Homolodromiidae Dicranodromia nagaii Guinot 1995 ナガイコウナガカムリ 静岡県沖, トロール, 水深200m, (1 新称 0003 4 短尾下目 コウナガカムリ科 ♀) Brachyura Dromiidae Eodromia denticulata McLay 1993 トゲトガリカイカムリ 和歌山県潮岬沖, 水深140m, (1♀) 0005 5 短尾下目 カイカムリ科 Brachyura Dromiidae Tunedromia yamashitai (Takeda & Miyake) 1970 ヤマシタヒラアシカムリ 和歌山県潮岬沖, 水深180~200 0006 6 短尾下目 カイカムリ科 m, (3♂♂,3♀♀) Brachyura Dromiidae Lauridromia dehaani (Rathbun) 1923 カイカムリ 静岡県清水市沖, 水深20m, 1973. 0007 7 短尾下目 カイカムリ科 Apr., (1♀) Brachyura Dromiidae Lauridromia intermedia (Laurie) 1906 アカゲカムリ 和歌山県串本町, 水深20~30m, 1 0008 8 短尾下目 カイカムリ科 978. Mar., (2♂♂) Brachyura Dromiidae Dromia dromia (Linnaeus) 1763 オオカイカムリ 台湾 澎湖島, 1976. Mar.,(1♂) 0009 9 短尾下目 カイカムリ科 Brachyura Dromiidae Dromia wilsoni (Fulton & Grant) 1902 ワタゲカムリ 和歌山県串本町, 水深15~20m, 1 0010 10 短尾下目 カイカムリ科 979. Feb.,(3♂♂) Brachyura Dromiidae Paradromia japonica (Henderson) 1888 ニホンカムリ 相模湾, (2♂♂);伊勢湾, (1♂) 0011 11 短尾下目 カイカムリ科 Brachyura Dromiidae Petalomera granulata Stimpson 1858 ヒラアシカムリ 神奈川県三浦半島, 1977. Jan., (1 0012 12 短尾下目 カイカムリ科 ♀);紀伊水道, トロール, 1991. Dec., (1♀) Brachyura Dromiidae Petalomera pulchra Miers 1894 ハリダシヒラアシカムリ 鹿児島県奄美大島大和村, 水深150 新称 0013 13 短尾下目 カイカムリ科 m, 1989. -
Anchialine Cave Biology in the Era of Speleogenomics Jorge L
International Journal of Speleology 45 (2) 149-170 Tampa, FL (USA) May 2016 Available online at scholarcommons.usf.edu/ijs International Journal of Speleology Off icial Journal of Union Internationale de Spéléologie Life in the Underworld: Anchialine cave biology in the era of speleogenomics Jorge L. Pérez-Moreno1*, Thomas M. Iliffe2, and Heather D. Bracken-Grissom1 1Department of Biological Sciences, Florida International University, Biscayne Bay Campus, North Miami FL 33181, USA 2Department of Marine Biology, Texas A&M University at Galveston, Galveston, TX 77553, USA Abstract: Anchialine caves contain haline bodies of water with underground connections to the ocean and limited exposure to open air. Despite being found on islands and peninsular coastlines around the world, the isolation of anchialine systems has facilitated the evolution of high levels of endemism among their inhabitants. The unique characteristics of anchialine caves and of their predominantly crustacean biodiversity nominate them as particularly interesting study subjects for evolutionary biology. However, there is presently a distinct scarcity of modern molecular methods being employed in the study of anchialine cave ecosystems. The use of current and emerging molecular techniques, e.g., next-generation sequencing (NGS), bestows an exceptional opportunity to answer a variety of long-standing questions pertaining to the realms of speciation, biogeography, population genetics, and evolution, as well as the emergence of extraordinary morphological and physiological adaptations to these unique environments. The integration of NGS methodologies with traditional taxonomic and ecological methods will help elucidate the unique characteristics and evolutionary history of anchialine cave fauna, and thus the significance of their conservation in face of current and future anthropogenic threats. -
Qt9z7703dj.Pdf
UC San Diego UC San Diego Previously Published Works Title Phylogeny and biogeography of a shallow water fish clade (Teleostei: Blenniiformes) Permalink https://escholarship.org/uc/item/9z7703dj Journal BMC Evolutionary Biology, 13(1) ISSN 1471-2148 Authors Lin, Hsiu-Chin Hastings, Philip A Publication Date 2013-09-25 DOI http://dx.doi.org/10.1186/1471-2148-13-210 Peer reviewed eScholarship.org Powered by the California Digital Library University of California Lin and Hastings BMC Evolutionary Biology 2013, 13:210 http://www.biomedcentral.com/1471-2148/13/210 RESEARCH ARTICLE Open Access Phylogeny and biogeography of a shallow water fish clade (Teleostei: Blenniiformes) Hsiu-Chin Lin1,2* and Philip A Hastings1 Abstract Background: The Blenniiformes comprises six families, 151 genera and nearly 900 species of small teleost fishes closely associated with coastal benthic habitats. They provide an unparalleled opportunity for studying marine biogeography because they include the globally distributed families Tripterygiidae (triplefin blennies) and Blenniidae (combtooth blennies), the temperate Clinidae (kelp blennies), and three largely Neotropical families (Labrisomidae, Chaenopsidae, and Dactyloscopidae). However, interpretation of these distributional patterns has been hindered by largely unresolved inter-familial relationships and the lack of evidence of monophyly of the Labrisomidae. Results: We explored the phylogenetic relationships of the Blenniiformes based on one mitochondrial (COI) and four nuclear (TMO-4C4, RAG1, Rhodopsin, and Histone H3) loci for 150 blenniiform species, and representative outgroups (Gobiesocidae, Opistognathidae and Grammatidae). According to the consensus of Bayesian Inference, Maximum Likelihood, and Maximum Parsimony analyses, the monophyly of the Blenniiformes and the Tripterygiidae, Blenniidae, Clinidae, and Dactyloscopidae is supported. -
A Chymotrypsin from the Digestive Tract of California Spiny Lobster, Panulirus Interruptus: Purification and Biochemical Characterization
A chymotrypsin from the Digestive Tract of California Spiny Lobster, Panulirus interruptus: Purification and Biochemical Characterization Betsaida Bibo-Verdugo, Liliana Rojo- Arreola, Maria A. Navarrete-del-Toro & Fernando García-Carreño Marine Biotechnology An International Journal Focusing on Marine Genomics, Molecular Biology and Biotechnology ISSN 1436-2228 Volume 17 Number 4 Mar Biotechnol (2015) 17:416-427 DOI 10.1007/s10126-015-9626-z 1 23 Your article is protected by copyright and all rights are held exclusively by Springer Science +Business Media New York. This e-offprint is for personal use only and shall not be self- archived in electronic repositories. If you wish to self-archive your article, please use the accepted manuscript version for posting on your own website. You may further deposit the accepted manuscript version in any repository, provided it is only made publicly available 12 months after official publication or later and provided acknowledgement is given to the original source of publication and a link is inserted to the published article on Springer's website. The link must be accompanied by the following text: "The final publication is available at link.springer.com”. 1 23 Author's personal copy Mar Biotechnol (2015) 17:416–427 DOI 10.1007/s10126-015-9626-z ORIGINAL ARTICLE A chymotrypsin from the Digestive Tract of California Spiny Lobster, Panulirus interruptus: Purification and Biochemical Characterization Betsaida Bibo-Verdugo1 & Liliana Rojo-Arreola1 & Maria A. Navarrete-del-Toro1 & Fernando García-Carreño1 Received: 13 August 2014 /Accepted: 31 January 2015 /Published online: 16 April 2015 # Springer Science+Business Media New York 2015 Abstract A chymotrypsin was purified from the gastric juice Introduction of California spiny lobster (Panulirus interrutpus), using pre- parative electrophoresis and affinity chromatography on aga- Proteolytic enzymes from the digestive system of crustacean rose-p-aminobenzamidine. -
CHECKLIST and BIOGEOGRAPHY of FISHES from GUADALUPE ISLAND, WESTERN MEXICO Héctor Reyes-Bonilla, Arturo Ayala-Bocos, Luis E
ReyeS-BONIllA eT Al: CheCklIST AND BIOgeOgRAphy Of fISheS fROm gUADAlUpe ISlAND CalCOfI Rep., Vol. 51, 2010 CHECKLIST AND BIOGEOGRAPHY OF FISHES FROM GUADALUPE ISLAND, WESTERN MEXICO Héctor REyES-BONILLA, Arturo AyALA-BOCOS, LUIS E. Calderon-AGUILERA SAúL GONzáLEz-Romero, ISRAEL SáNCHEz-ALCántara Centro de Investigación Científica y de Educación Superior de Ensenada AND MARIANA Walther MENDOzA Carretera Tijuana - Ensenada # 3918, zona Playitas, C.P. 22860 Universidad Autónoma de Baja California Sur Ensenada, B.C., México Departamento de Biología Marina Tel: +52 646 1750500, ext. 25257; Fax: +52 646 Apartado postal 19-B, CP 23080 [email protected] La Paz, B.C.S., México. Tel: (612) 123-8800, ext. 4160; Fax: (612) 123-8819 NADIA C. Olivares-BAñUELOS [email protected] Reserva de la Biosfera Isla Guadalupe Comisión Nacional de áreas Naturales Protegidas yULIANA R. BEDOLLA-GUzMáN AND Avenida del Puerto 375, local 30 Arturo RAMíREz-VALDEz Fraccionamiento Playas de Ensenada, C.P. 22880 Universidad Autónoma de Baja California Ensenada, B.C., México Facultad de Ciencias Marinas, Instituto de Investigaciones Oceanológicas Universidad Autónoma de Baja California, Carr. Tijuana-Ensenada km. 107, Apartado postal 453, C.P. 22890 Ensenada, B.C., México ABSTRACT recognized the biological and ecological significance of Guadalupe Island, off Baja California, México, is Guadalupe Island, and declared it a Biosphere Reserve an important fishing area which also harbors high (SEMARNAT 2005). marine biodiversity. Based on field data, literature Guadalupe Island is isolated, far away from the main- reviews, and scientific collection records, we pres- land and has limited logistic facilities to conduct scien- ent a comprehensive checklist of the local fish fauna, tific studies. -
68 Guide to Crustacea
68 Guide to Crustacea. The arrow indicates the course of the respiratory current, which, however, may sometimes be temporarily reversed, especially in burrowing species. The typical members of the family Portunidae (Swimming FIG. 46. Pseudocarcinus gigas, from Tasmania. The carapace of this specimen is just over a foot in width. [Above Wall-cases Nos. 5 and 6.] Crabs) may be recognised by the flattened, paddle-shaped, last pair of legs. Two British species of the genus Portunus are exhibited : the colours of P. depurator have been carefully copied from a living individual, and the specimen is mounted on a sample Decapoda—Brachyura. 69 of the shell-gravel on which it was actually caught. The large Neptunus pelagicus is the commonest edible Crab in many parts of the East. The Common Shore Crab, Carcinus maenas, is also referred to this family, although the paddle-shape of the last legs is not so marked as in the more typical Portunidae. Podophthalmus vigil (Fig. 47) is remarkable for the great length of the eye-stalks, which is quite unusual among the Cyclometopa, and gives this Crab a curious likeness to the genus Macrophthalmus among the Ocypodidae (see Table-case No. 16). The resemblance, however, is quite superficial, for in this case FIG. 47. Podophthalmus vigil (reduced). [Table-case No. 15.] it is the first of the two segments of the eye-stalk which is elongated, while in Macrophthalmus it is the second. The genus Platyonychus, of which a group of specimens is mounted in Wall-case No. 5, also belongs to this family. -
A Systematic and Experimental Analysis of Their Genes, Genomes, Mrnas and Proteins; and Perspective to Next Generation Sequencing
Crustaceana 92 (10) 1169-1205 CRUSTACEAN VITELLOGENIN: A SYSTEMATIC AND EXPERIMENTAL ANALYSIS OF THEIR GENES, GENOMES, MRNAS AND PROTEINS; AND PERSPECTIVE TO NEXT GENERATION SEQUENCING BY STEPHANIE JIMENEZ-GUTIERREZ1), CRISTIAN E. CADENA-CABALLERO2), CARLOS BARRIOS-HERNANDEZ3), RAUL PEREZ-GONZALEZ1), FRANCISCO MARTINEZ-PEREZ2,3) and LAURA R. JIMENEZ-GUTIERREZ1,5) 1) Sea Science Faculty, Sinaloa Autonomous University, Mazatlan, Sinaloa, 82000, Mexico 2) Coelomate Genomic Laboratory, Microbiology and Genetics Group, Industrial University of Santander, Bucaramanga, 680007, Colombia 3) Advanced Computing and a Large Scale Group, Industrial University of Santander, Bucaramanga, 680007, Colombia 4) Catedra-CONACYT, National Council for Science and Technology, CDMX, 03940, Mexico ABSTRACT Crustacean vitellogenesis is a process that involves Vitellin, produced via endoproteolysis of its precursor, which is designated as Vitellogenin (Vtg). The Vtg gene, mRNA and protein regulation involve several environmental factors and physiological processes, including gonadal maturation and moult stages, among others. Once the Vtg gene, mRNAs and protein are obtained, it is possible to establish the relationship between the elements that participate in their regulation, which could either be species-specific, or tissue-specific. This work is a systematic analysis that compares the similarities and differences of Vtg genes, mRNA and Vtg between the crustacean species reported in databases with respect to that obtained from the transcriptome of Callinectes arcuatus, C. toxotes, Penaeus stylirostris and P. vannamei obtained with MiSeq sequencing technology from Illumina. Those analyses confirm that the Vtg obtained from selected species will serve to understand the process of vitellogenesis in crustaceans that is important for fisheries and aquaculture. RESUMEN La vitelogénesis de los crustáceos es un proceso que involucra la vitelina, producida a través de la endoproteólisis de su precursor llamado Vitelogenina (Vtg). -
ASSESSMENT of COASTAL WATER RESOURCES and WATERSHED CONDITIONS at CHANNEL ISLANDS NATIONAL PARK, CALIFORNIA Dr. Diana L. Engle
National Park Service U.S. Department of the Interior Technical Report NPS/NRWRD/NRTR-2006/354 Water Resources Division Natural Resource Program Centerent of the Interior ASSESSMENT OF COASTAL WATER RESOURCES AND WATERSHED CONDITIONS AT CHANNEL ISLANDS NATIONAL PARK, CALIFORNIA Dr. Diana L. Engle The National Park Service Water Resources Division is responsible for providing water resources management policy and guidelines, planning, technical assistance, training, and operational support to units of the National Park System. Program areas include water rights, water resources planning, marine resource management, regulatory guidance and review, hydrology, water quality, watershed management, watershed studies, and aquatic ecology. Technical Reports The National Park Service disseminates the results of biological, physical, and social research through the Natural Resources Technical Report Series. Natural resources inventories and monitoring activities, scientific literature reviews, bibliographies, and proceedings of technical workshops and conferences are also disseminated through this series. Mention of trade names or commercial products does not constitute endorsement or recommendation for use by the National Park Service. Copies of this report are available from the following: National Park Service (970) 225-3500 Water Resources Division 1201 Oak Ridge Drive, Suite 250 Fort Collins, CO 80525 National Park Service (303) 969-2130 Technical Information Center Denver Service Center P.O. Box 25287 Denver, CO 80225-0287 Cover photos: Top Left: Santa Cruz, Kristen Keteles Top Right: Brown Pelican, NPS photo Bottom Left: Red Abalone, NPS photo Bottom Left: Santa Rosa, Kristen Keteles Bottom Middle: Anacapa, Kristen Keteles Assessment of Coastal Water Resources and Watershed Conditions at Channel Islands National Park, California Dr. Diana L. -
From Ghost and Mud Shrimp
Zootaxa 4365 (3): 251–301 ISSN 1175-5326 (print edition) http://www.mapress.com/j/zt/ Article ZOOTAXA Copyright © 2017 Magnolia Press ISSN 1175-5334 (online edition) https://doi.org/10.11646/zootaxa.4365.3.1 http://zoobank.org/urn:lsid:zoobank.org:pub:C5AC71E8-2F60-448E-B50D-22B61AC11E6A Parasites (Isopoda: Epicaridea and Nematoda) from ghost and mud shrimp (Decapoda: Axiidea and Gebiidea) with descriptions of a new genus and a new species of bopyrid isopod and clarification of Pseudione Kossmann, 1881 CHRISTOPHER B. BOYKO1,4, JASON D. WILLIAMS2 & JEFFREY D. SHIELDS3 1Division of Invertebrate Zoology, American Museum of Natural History, Central Park West @ 79th St., New York, New York 10024, U.S.A. E-mail: [email protected] 2Department of Biology, Hofstra University, Hempstead, New York 11549, U.S.A. E-mail: [email protected] 3Department of Aquatic Health Sciences, Virginia Institute of Marine Science, College of William & Mary, P.O. Box 1346, Gloucester Point, Virginia 23062, U.S.A. E-mail: [email protected] 4Corresponding author Table of contents Abstract . 252 Introduction . 252 Methods and materials . 253 Taxonomy . 253 Isopoda Latreille, 1817 . 253 Bopyroidea Rafinesque, 1815 . 253 Ionidae H. Milne Edwards, 1840. 253 Ione Latreille, 1818 . 253 Ione cornuta Bate, 1864 . 254 Ione thompsoni Richardson, 1904. 255 Ione thoracica (Montagu, 1808) . 256 Bopyridae Rafinesque, 1815 . 260 Pseudioninae Codreanu, 1967 . 260 Acrobelione Bourdon, 1981. 260 Acrobelione halimedae n. sp. 260 Key to females of species of Acrobelione Bourdon, 1981 . 262 Gyge Cornalia & Panceri, 1861. 262 Gyge branchialis Cornalia & Panceri, 1861 . 262 Gyge ovalis (Shiino, 1939) . 264 Ionella Bonnier, 1900 . -
Development and Behavior of Megalopa Larvae and Juveniles of the Hydrothermal Vent Crab Bythograea Therm Ydron
MARINE ECOLOGY PROGRESS SERIES Published August 20 Mar Ecol Prog Ser I Development and behavior of megalopa larvae and juveniles of the hydrothermal vent crab Bythograea therm ydron C. E. Epifanio*, G. Perovich, A. I. Dittel, S. C. Cary Graduate College of Marine Studies, University of Delaware, Lewes, Delaware 19958, USA ABSTRACT: We collected megalopa larvae and early juveniles of the crab Bythograea thermydron from a depth of 2500 to 2600 m at a hydrothermal vent field along the East Pacific Rise (ca 9" to 10" N, 104' W). Taxononlic identification of the megalopa larvae was accomplished through the use of mor- phological characteristics corroborated by molecular genetic analysis of an amplified portion of DNA from the mitochondnal 16s rRNA gene. We successfully reared megalopa larvae through metamorpho- sis and through subsequent juvenile molts at atmospheric pressure in the laboratory. This is the first time that this has been reported for any vent species. Laboratory data were combined with measure- ments of field-caught juveniles to ailow estimation of carapace xvidth, dry weight, and Stage duration of the first 5 juvenile Stages. Results of behavioral experiments indicated that B. thermydron megalopae swim actively over the range of temperature expected near the vents (2 to 25'C). Swimming speed var- ied with temperature (4 to 10 cm s-'), but generaily exceeded the speed of bottom currents at the vent fields. Moreover, the propensity to swirn was inversely related to temperature. These results suggest that swimming behavior may be an important component of locating warm vent Settlement sites in the otherwise cold waters surrounding a vent field. -
Looking Beyond the Mortality of Bycatch: Sublethal Effects of Incidental Capture on Marine Animals
Biological Conservation 171 (2014) 61–72 Contents lists available at ScienceDirect Biological Conservation journal homepage: www.elsevier.com/locate/biocon Review Looking beyond the mortality of bycatch: sublethal effects of incidental capture on marine animals a, a a,b b a Samantha M. Wilson ⇑, Graham D. Raby , Nicholas J. Burnett , Scott G. Hinch , Steven J. Cooke a Fish Ecology and Conservation Physiology Laboratory, Department of Biology and Institute of Environmental Sciences, Carleton University, Ottawa, ON, Canada b Pacific Salmon Ecology and Conservation Laboratory, Department of Forest and Conservation Sciences, University of British Columbia, Vancouver, BC, Canada article info abstract Article history: There is a widely recognized need to understand and reduce the incidental effects of marine fishing on Received 14 August 2013 non-target animals. Previous research on marine bycatch has largely focused on simply quantifying mor- Received in revised form 10 January 2014 tality. However, much less is known about the organism-level sublethal effects, including the potential Accepted 13 January 2014 for behavioural alterations, physiological and energetic costs, and associated reductions in feeding, growth, or reproduction (i.e., fitness) which can occur undetected following escape or release from fishing gear. We reviewed the literature and found 133 marine bycatch papers that included sublethal endpoints Keywords: such as physiological disturbance, behavioural impairment, injury, reflex impairment, and effects on RAMP reproduction,