The Origin and Early Evolution of Vascular Plant Shoots and Leaves Rstb.Royalsocietypublishing.Org C
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Getting to the Roots: a Developmental Genetic View of Root Anatomy and Function from Arabidopsis to Lycophytes
fpls-09-01410 September 21, 2018 Time: 17:3 # 1 REVIEW published: 25 September 2018 doi: 10.3389/fpls.2018.01410 Getting to the Roots: A Developmental Genetic View of Root Anatomy and Function From Arabidopsis to Lycophytes Frauke Augstein and Annelie Carlsbecker* Department of Organismal Biology, Physiological Botany and Linnean Centre for Plant Biology in Uppsala, Uppsala University, Uppsala, Sweden Roots attach plants to the ground and ensure efficient and selective uptake of water and nutrients. These functions are facilitated by the morphological and anatomical structures of the root, formed by the activity of the root apical meristem (RAM) and consecutive patterning and differentiation of specific tissues with distinct functions. Despite the importance of this plant organ, its evolutionary history is not clear, but fossils suggest that roots evolved at least twice, in the lycophyte (clubmosses and their allies) and in the euphyllophyte (ferns and seed plants) lineages. Both lycophyte and euphyllophyte roots grow indeterminately by the action of an apical meristem, which is protected by a root cap. They produce root hairs, and in most species the vascular stele is Edited by: guarded by a specialized endodermal cell layer. Hence, most of these traits must have Annette Becker, evolved independently in these lineages. This raises the question if the development Justus Liebig Universität Gießen, Germany of these apparently analogous tissues is regulated by distinct or homologous genes, Reviewed by: independently recruited from a common ancestor of lycophytes and euphyllophytes. Hongchang Cui, Currently, there are few studies of the genetic and molecular regulation of lycophyte Florida State University, United States and fern roots. -
Earliest Record of Megaphylls and Leafy Structures, and Their Initial Diversification
Review Geology August 2013 Vol.58 No.23: 27842793 doi: 10.1007/s11434-013-5799-x Earliest record of megaphylls and leafy structures, and their initial diversification HAO ShouGang* & XUE JinZhuang Key Laboratory of Orogenic Belts and Crustal Evolution, School of Earth and Space Sciences, Peking University, Beijing 100871, China Received January 14, 2013; accepted February 26, 2013; published online April 10, 2013 Evolutionary changes in the structure of leaves have had far-reaching effects on the anatomy and physiology of vascular plants, resulting in morphological diversity and species expansion. People have long been interested in the question of the nature of the morphology of early leaves and how they were attained. At least five lineages of euphyllophytes can be recognized among the Early Devonian fossil plants (Pragian age, ca. 410 Ma ago) of South China. Their different leaf precursors or “branch-leaf com- plexes” are believed to foreshadow true megaphylls with different venation patterns and configurations, indicating that multiple origins of megaphylls had occurred by the Early Devonian, much earlier than has previously been recognized. In addition to megaphylls in euphyllophytes, the laminate leaf-like appendages (sporophylls or bracts) occurred independently in several dis- tantly related Early Devonian plant lineages, probably as a response to ecological factors such as high atmospheric CO2 concen- trations. This is a typical example of convergent evolution in early plants. Early Devonian, euphyllophyte, megaphyll, leaf-like appendage, branch-leaf complex Citation: Hao S G, Xue J Z. Earliest record of megaphylls and leafy structures, and their initial diversification. Chin Sci Bull, 2013, 58: 27842793, doi: 10.1007/s11434- 013-5799-x The origin and evolution of leaves in vascular plants was phology and evolutionary diversification of early leaves of one of the most important evolutionary events affecting the basal euphyllophytes remain enigmatic. -
Paleoecology and Land-Use of Quaternary Megafauna from Saltville, Virginia Emily Simpson East Tennessee State University
East Tennessee State University Digital Commons @ East Tennessee State University Electronic Theses and Dissertations Student Works 5-2019 Paleoecology and Land-Use of Quaternary Megafauna from Saltville, Virginia Emily Simpson East Tennessee State University Follow this and additional works at: https://dc.etsu.edu/etd Part of the Paleontology Commons Recommended Citation Simpson, Emily, "Paleoecology and Land-Use of Quaternary Megafauna from Saltville, Virginia" (2019). Electronic Theses and Dissertations. Paper 3590. https://dc.etsu.edu/etd/3590 This Thesis - Open Access is brought to you for free and open access by the Student Works at Digital Commons @ East Tennessee State University. It has been accepted for inclusion in Electronic Theses and Dissertations by an authorized administrator of Digital Commons @ East Tennessee State University. For more information, please contact [email protected]. Paleoecology and Land-Use of Quaternary Megafauna from Saltville, Virginia ________________________________ A thesis presented to the faculty of the Department of Geosciences East Tennessee State University In partial fulfillment of the requirements for the degree Master of Science in Geosciences with a concentration in Paleontology _______________________________ by Emily Michelle Bruff Simpson May 2019 ________________________________ Dr. Chris Widga, Chair Dr. Blaine W. Schubert Dr. Andrew Joyner Key Words: Paleoecology, land-use, grassy balds, stable isotope ecology, Whitetop Mountain ABSTRACT Paleoecology and Land-Use of Quaternary Megafauna from Saltville, Virginia by Emily Michelle Bruff Simpson Land-use, feeding habits, and response to seasonality by Quaternary megaherbivores in Saltville, Virginia, is poorly understood. Stable isotope analyses of serially sampled Bootherium and Equus enamel from Saltville were used to explore seasonally calibrated (δ18O) patterns in megaherbivore diet (δ13C) and land-use (87Sr/86Sr). -
JUDD W.S. Et. Al. (2002) Plant Systematics: a Phylogenetic Approach. Chapter 7. an Overview of Green
UNCORRECTED PAGE PROOFS An Overview of Green Plant Phylogeny he word plant is commonly used to refer to any auto- trophic eukaryotic organism capable of converting light energy into chemical energy via the process of photosynthe- sis. More specifically, these organisms produce carbohydrates from carbon dioxide and water in the presence of chlorophyll inside of organelles called chloroplasts. Sometimes the term plant is extended to include autotrophic prokaryotic forms, especially the (eu)bacterial lineage known as the cyanobacteria (or blue- green algae). Many traditional botany textbooks even include the fungi, which differ dramatically in being heterotrophic eukaryotic organisms that enzymatically break down living or dead organic material and then absorb the simpler products. Fungi appear to be more closely related to animals, another lineage of heterotrophs characterized by eating other organisms and digesting them inter- nally. In this chapter we first briefly discuss the origin and evolution of several separately evolved plant lineages, both to acquaint you with these important branches of the tree of life and to help put the green plant lineage in broad phylogenetic perspective. We then focus attention on the evolution of green plants, emphasizing sev- eral critical transitions. Specifically, we concentrate on the origins of land plants (embryophytes), of vascular plants (tracheophytes), of 1 UNCORRECTED PAGE PROOFS 2 CHAPTER SEVEN seed plants (spermatophytes), and of flowering plants dons.” In some cases it is possible to abandon such (angiosperms). names entirely, but in others it is tempting to retain Although knowledge of fossil plants is critical to a them, either as common names for certain forms of orga- deep understanding of each of these shifts and some key nization (e.g., the “bryophytic” life cycle), or to refer to a fossils are mentioned, much of our discussion focuses on clade (e.g., applying “gymnosperms” to a hypothesized extant groups. -
Evolution of the Female Conifer Cone Fossils, Morphology and Phylogenetics
DEPARTMENT OF BIOLOGICAL AND ENVIRONMENTAL SCIENCES EVOLUTION OF THE FEMALE CONIFER CONE FOSSILS, MORPHOLOGY AND PHYLOGENETICS Daniel Bäck Degree project for Bachelor of Science with a major in Biology BIO602, Biologi: Examensarbete – kandidatexamen, 15 hp First cycle Semester/year: Spring 2020 Supervisor: Åslög Dahl, Department of Biological and Environmental Sciences Examiner: Claes Persson, Department of Biological and Environmental Sciences Front page: Abies koreana (immature seed cones), Gothenburg Botanical Garden, Sweden Table of contents 1 Abstract ............................................................................................................................... 2 2 Introduction ......................................................................................................................... 3 2.1 Brief history of Florin’s research ............................................................................... 3 2.2 Progress in conifer phylogenetics .............................................................................. 4 3 Aims .................................................................................................................................... 4 4 Materials and Methods ........................................................................................................ 4 4.1 Literature: ................................................................................................................... 4 4.2 RStudio: ..................................................................................................................... -
Ancient Noeggerathialean Reveals the Seed Plant Sister Group Diversified Alongside the Primary Seed Plant Radiation
Ancient noeggerathialean reveals the seed plant sister group diversified alongside the primary seed plant radiation Jun Wanga,b,c,1, Jason Hiltond,e, Hermann W. Pfefferkornf, Shijun Wangg, Yi Zhangh, Jiri Beki, Josef Pšenickaˇ j, Leyla J. Seyfullahk, and David Dilcherl,m,1 aState Key Laboratory of Palaeobiology and Stratigraphy, Nanjing Institute of Geology and Palaeontology, Chinese Academy of Sciences, Nanjing 210008, China; bCenter for Excellence in Life and Paleoenvironment, Chinese Academy of Sciences, Nanjing 210008, China; cUniversity of Chinese Academy of Sciences, Shijingshan District, Beijing 100049, China; dSchool of Geography, Earth and Environmental Sciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom; eBirmingham Institute of Forest Research, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom; fDepartment of Earth and Environmental Science, University of Pennsylvania, Philadelphia, PA 19104-6316; gState Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Xiangshan, Beijing 100093, China; hCollege of Paleontology, Shenyang Normal University, Key Laboratory for Evolution of Past Life in Northeast Asia, Ministry of Natural Resources, Shenyang 110034, China; iDepartment of Palaeobiology and Palaeoecology, Institute of Geology v.v.i., Academy of Sciences of the Czech Republic, 165 00 Praha 6, Czech Republic; jCentre of Palaeobiodiversity, West Bohemian Museum in Plzen, 301 36 Plzen, Czech Republic; kDepartment of Paleontology, Geozentrum, University of Vienna, 1090 Vienna, Austria; lIndiana Geological and Water Survey, Bloomington, IN 47404; and mDepartment of Geology and Atmospheric Science, Indiana University, Bloomington, IN 47405 Contributed by David Dilcher, September 10, 2020 (sent for review July 2, 2020; reviewed by Melanie Devore and Gregory J. -
Updated Angiosperm Family Tree for Analyzing Phylogenetic Diversity and Community Structure
Acta Botanica Brasilica - 31(2): 191-198. April-June 2017. doi: 10.1590/0102-33062016abb0306 Updated angiosperm family tree for analyzing phylogenetic diversity and community structure Markus Gastauer1,2* and João Augusto Alves Meira-Neto2 Received: August 19, 2016 Accepted: March 3, 2017 . ABSTRACT Th e computation of phylogenetic diversity and phylogenetic community structure demands an accurately calibrated, high-resolution phylogeny, which refl ects current knowledge regarding diversifi cation within the group of interest. Herein we present the angiosperm phylogeny R20160415.new, which is based on the topology proposed by the Angiosperm Phylogeny Group IV, a recently released compilation of angiosperm diversifi cation. R20160415.new is calibratable by diff erent sets of recently published estimates of mean node ages. Its application for the computation of phylogenetic diversity and/or phylogenetic community structure is straightforward and ensures the inclusion of up-to-date information in user specifi c applications, as long as users are familiar with the pitfalls of such hand- made supertrees. Keywords: angiosperm diversifi cation, APG IV, community tree calibration, megatrees, phylogenetic topology phylogeny comprising the entire taxonomic group under Introduction study (Gastauer & Meira-Neto 2013). Th e constant increase in knowledge about the phylogenetic The phylogenetic structure of a biological community relationships among taxa (e.g., Cox et al. 2014) requires regular determines whether species that coexist within a given revision of applied phylogenies in order to incorporate novel data community are more closely related than expected by chance, and is essential information for investigating and avoid out-dated information in analyses of phylogenetic community assembly rules (Kembel & Hubbell 2006; diversity and community structure. -
Curriculum Vitae
CURRICULUM VITAE ORCID ID: 0000-0003-0186-6546 Gar W. Rothwell Edwin and Ruth Kennedy Distinguished Professor Emeritus Department of Environmental and Plant Biology Porter Hall 401E T: 740 593 1129 Ohio University F: 740 593 1130 Athens, OH 45701 E: [email protected] also Courtesy Professor Department of Botany and PlantPathology Oregon State University T: 541 737- 5252 Corvallis, OR 97331 E: [email protected] Education Ph.D.,1973 University of Alberta (Botany) M.S., 1969 University of Illinois, Chicago (Biology) B.A., 1966 Central Washington University (Biology) Academic Awards and Honors 2018 International Organisation of Palaeobotany lifetime Honorary Membership 2014 Fellow of the Paleontological Society 2009 Distinguished Fellow of the Botanical Society of America 2004 Ohio University Distinguished Professor 2002 Michael A. Cichan Award, Botanical Society of America 1999-2004 Ohio University Presidential Research Scholar in Biomedical and Life Sciences 1993 Edgar T. Wherry Award, Botanical Society of America 1991-1992 Outstanding Graduate Faculty Award, Ohio University 1982-1983 Chairman, Paleobotanical Section, Botanical Society of America 1972-1973 University of Alberta Dissertation Fellow 1971 Paleobotanical (Isabel Cookson) Award, Botanical Society of America Positions Held 2011-present Courtesy Professor of Botany and Plant Pathology, Oregon State University 2008-2009 Visiting Senior Researcher, University of Alberta 2004-present Edwin and Ruth Kennedy Distinguished Professor of Environmental and Plant Biology, Ohio -
Transformative Paleobotany
Chapter 6 Lower Permian Flora of the Sanzenbacher Ranch, Clay County, Texas William A. DiMichele1, Robert W. Hook2, Hans Kerp3, Carol L. Hotton1,4, Cindy V. Looy5 and Dan S. Chaney1 1NMNH Smithsonian Institution, Washington, DC, United States; 2The University of Texas at Austin, Austin, TX, United States; 3Westfälische Wilhelms-Universität Münster, Münster, Germany; 4National Institutes of Health, Bethesda, MD, United States; 5University of California Berkeley, Berkeley, CA, United States 1. INTRODUCTION 1985; Broutin, 1986; Popa, 1999; Steyer et al., 2000; Wagner and Mayoral, 2007; Bercovici and Broutin, 2008; Since 1989, field parties supported by the U.S. National Barthel, 2009; Wagner and Álvarez-Vázquez, 2010; Museum of Natural History have obtained large collections Barthel and Brauner, 2015). Furthermore, because this of mainly Permian plant fossils from north central Texas. locality was collected on three occasions over a time period This work was undertaken to study known localities and to of 50 years and by different parties, comparative analysis of find new fossiliferous deposits that would contribute to a the Sanzenbacher collections provides a basis for assessing better understanding of floral and paleoenvironmental sites that have comparable histories. changes within the region during the early Permian. From the outset, the effort was interdisciplinary and grew, through the contributions of nearly 20 paleobotanists, 2. GEOLOGY palynologists, invertebrate and vertebrate paleontologists, Clay County is the only county in the Permo-Carboniferous and sedimentary geologists of several subdisciplines, to be outcrop belt of north central Texas that lacks marine rocks. quite comprehensive. Our reporting of results, however, has These alluvial sediments accumulated east of a broad been influenced by unexpected developments, including the coastal plain that bordered the Eastern Shelf of the Midland discovery of new plant-fossil assemblages in areas once Basin. -
Horsetails and Ferns Are a Monophyletic Group and the Closest Living Relatives to Seed Plants
letters to nature joining trees and the amino-acid maximum parsimony phylogenies, and 100 replicates for ................................................................. the nucleotide maximum likelihood tree and the amino-acid distance-based analyses (Dayhoff PAM matrix) (see Supplementary Information for additional trees and summary Horsetails and ferns are a of bootstrap support). We performed tests of alternative phylogenetic hypotheses using Kishino±Hasegawa29 (parsimony and likelihood) and Templeton's non-parametric30 tests. monophyletic group and the Received 30 October; accepted 4 December 2000. closestlivingrelativestoseedplants 1. Eisenberg, J. F. The Mammalian Radiations (Chicago Univ. Press, Chicago, 1981). 2. Novacek, M. J. Mammalian phylogeny: shaking the tree. Nature 356, 121±125 (1992). 3. O'Brien, S. J. et al. The promise of comparative genomics in mammals. Science 286, 458±481 (1999). Kathleen M. Pryer*, Harald Schneider*, Alan R. Smith², 4. Springer, M. S. et al. Endemic African mammals shake the phylogenetic tree. Nature 388, 61±64 (1997). Raymond Cran®ll², Paul G. Wolf³, Jeffrey S. Hunt* & Sedonia D. Sipes³ 5. Stanhope, M. J. et al. Highly congruent molecular support for a diverse clade of endemic African mammals. Mol. Phylogenet. Evol. 9, 501±508 (1998). * Department of Botany, The Field Museum of Natural History, 6. McKenna, M. C. & Bell, S. K. Classi®cation of Mammals above the Species Level (Columbia Univ. Press, New York, 1997). 1400 S. Lake Shore Drive, Chicago, Illinois 60605, USA 7. Mouchatty, S. K., Gullberg, A., Janke, A. & Arnason, U. The phylogenetic position of the Talpidae ² University Herbarium, University of California, 1001 Valley Life Sciences within Eutheria based on analysis of complete mitochondrial sequences. Mol. -
Diversity and Evolution of the Megaphyll in Euphyllophytes
G Model PALEVO-665; No. of Pages 16 ARTICLE IN PRESS C. R. Palevol xxx (2012) xxx–xxx Contents lists available at SciVerse ScienceDirect Comptes Rendus Palevol w ww.sciencedirect.com General palaeontology, systematics and evolution (Palaeobotany) Diversity and evolution of the megaphyll in Euphyllophytes: Phylogenetic hypotheses and the problem of foliar organ definition Diversité et évolution de la mégaphylle chez les Euphyllophytes : hypothèses phylogénétiques et le problème de la définition de l’organe foliaire ∗ Adèle Corvez , Véronique Barriel , Jean-Yves Dubuisson UMR 7207 CNRS-MNHN-UPMC, centre de recherches en paléobiodiversité et paléoenvironnements, 57, rue Cuvier, CP 48, 75005 Paris, France a r t i c l e i n f o a b s t r a c t Article history: Recent paleobotanical studies suggest that megaphylls evolved several times in land plant st Received 1 February 2012 evolution, implying that behind the single word “megaphyll” are hidden very differ- Accepted after revision 23 May 2012 ent notions and concepts. We therefore review current knowledge about diverse foliar Available online xxx organs and related characters observed in fossil and living plants, using one phylogenetic hypothesis to infer their origins and evolution. Four foliar organs and one lateral axis are Presented by Philippe Taquet described in detail and differ by the different combination of four main characters: lateral organ symmetry, abdaxity, planation and webbing. Phylogenetic analyses show that the Keywords: “true” megaphyll appeared at least twice in Euphyllophytes, and that the history of the Euphyllophytes Megaphyll four main characters is different in each case. The current definition of the megaphyll is questioned; we propose a clear and accurate terminology in order to remove ambiguities Bilateral symmetry Abdaxity of the current vocabulary. -
Phylogenetic Analyses of Cretaceous Fossils Related to Chloranthaceae and Their Evolutionary Implications
UC Davis UC Davis Previously Published Works Title Phylogenetic Analyses of Cretaceous Fossils Related to Chloranthaceae and their Evolutionary Implications Permalink https://escholarship.org/uc/item/0d58r5r0 Journal Botanical Review, 84(2) ISSN 0006-8101 Authors Doyle, JA Endress, PK Publication Date 2018-06-01 DOI 10.1007/s12229-018-9197-6 Peer reviewed eScholarship.org Powered by the California Digital Library University of California Phylogenetic Analyses of Cretaceous Fossils Related to Chloranthaceae and their Evolutionary Implications James A. Doyle & Peter K. Endress The Botanical Review ISSN 0006-8101 Volume 84 Number 2 Bot. Rev. (2018) 84:156-202 DOI 10.1007/s12229-018-9197-6 1 23 Your article is protected by copyright and all rights are held exclusively by The New York Botanical Garden. This e-offprint is for personal use only and shall not be self- archived in electronic repositories. If you wish to self-archive your article, please use the accepted manuscript version for posting on your own website. You may further deposit the accepted manuscript version in any repository, provided it is only made publicly available 12 months after official publication or later and provided acknowledgement is given to the original source of publication and a link is inserted to the published article on Springer's website. The link must be accompanied by the following text: "The final publication is available at link.springer.com”. 1 23 Author's personal copy Bot. Rev. (2018) 84:156–202 https://doi.org/10.1007/s12229-018-9197-6 Phylogenetic Analyses of Cretaceous Fossils Related to Chloranthaceae and their Evolutionary Implications James A.