Contrasting Patterns of Changes in Abundance Following a Bleaching Event Between Juvenile and Adult Scleractinian Corals
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Volume 2. Animals
AC20 Doc. 8.5 Annex (English only/Seulement en anglais/Únicamente en inglés) REVIEW OF SIGNIFICANT TRADE ANALYSIS OF TRADE TRENDS WITH NOTES ON THE CONSERVATION STATUS OF SELECTED SPECIES Volume 2. Animals Prepared for the CITES Animals Committee, CITES Secretariat by the United Nations Environment Programme World Conservation Monitoring Centre JANUARY 2004 AC20 Doc. 8.5 – p. 3 Prepared and produced by: UNEP World Conservation Monitoring Centre, Cambridge, UK UNEP WORLD CONSERVATION MONITORING CENTRE (UNEP-WCMC) www.unep-wcmc.org The UNEP World Conservation Monitoring Centre is the biodiversity assessment and policy implementation arm of the United Nations Environment Programme, the world’s foremost intergovernmental environmental organisation. UNEP-WCMC aims to help decision-makers recognise the value of biodiversity to people everywhere, and to apply this knowledge to all that they do. The Centre’s challenge is to transform complex data into policy-relevant information, to build tools and systems for analysis and integration, and to support the needs of nations and the international community as they engage in joint programmes of action. UNEP-WCMC provides objective, scientifically rigorous products and services that include ecosystem assessments, support for implementation of environmental agreements, regional and global biodiversity information, research on threats and impacts, and development of future scenarios for the living world. Prepared for: The CITES Secretariat, Geneva A contribution to UNEP - The United Nations Environment Programme Printed by: UNEP World Conservation Monitoring Centre 219 Huntingdon Road, Cambridge CB3 0DL, UK © Copyright: UNEP World Conservation Monitoring Centre/CITES Secretariat The contents of this report do not necessarily reflect the views or policies of UNEP or contributory organisations. -
The Earliest Diverging Extant Scleractinian Corals Recovered by Mitochondrial Genomes Isabela G
www.nature.com/scientificreports OPEN The earliest diverging extant scleractinian corals recovered by mitochondrial genomes Isabela G. L. Seiblitz1,2*, Kátia C. C. Capel2, Jarosław Stolarski3, Zheng Bin Randolph Quek4, Danwei Huang4,5 & Marcelo V. Kitahara1,2 Evolutionary reconstructions of scleractinian corals have a discrepant proportion of zooxanthellate reef-building species in relation to their azooxanthellate deep-sea counterparts. In particular, the earliest diverging “Basal” lineage remains poorly studied compared to “Robust” and “Complex” corals. The lack of data from corals other than reef-building species impairs a broader understanding of scleractinian evolution. Here, based on complete mitogenomes, the early onset of azooxanthellate corals is explored focusing on one of the most morphologically distinct families, Micrabaciidae. Sequenced on both Illumina and Sanger platforms, mitogenomes of four micrabaciids range from 19,048 to 19,542 bp and have gene content and order similar to the majority of scleractinians. Phylogenies containing all mitochondrial genes confrm the monophyly of Micrabaciidae as a sister group to the rest of Scleractinia. This topology not only corroborates the hypothesis of a solitary and azooxanthellate ancestor for the order, but also agrees with the unique skeletal microstructure previously found in the family. Moreover, the early-diverging position of micrabaciids followed by gardineriids reinforces the previously observed macromorphological similarities between micrabaciids and Corallimorpharia as -
CNIDARIA Corals, Medusae, Hydroids, Myxozoans
FOUR Phylum CNIDARIA corals, medusae, hydroids, myxozoans STEPHEN D. CAIRNS, LISA-ANN GERSHWIN, FRED J. BROOK, PHILIP PUGH, ELLIOT W. Dawson, OscaR OcaÑA V., WILLEM VERvooRT, GARY WILLIAMS, JEANETTE E. Watson, DENNIS M. OPREsko, PETER SCHUCHERT, P. MICHAEL HINE, DENNIS P. GORDON, HAMISH J. CAMPBELL, ANTHONY J. WRIGHT, JUAN A. SÁNCHEZ, DAPHNE G. FAUTIN his ancient phylum of mostly marine organisms is best known for its contribution to geomorphological features, forming thousands of square Tkilometres of coral reefs in warm tropical waters. Their fossil remains contribute to some limestones. Cnidarians are also significant components of the plankton, where large medusae – popularly called jellyfish – and colonial forms like Portuguese man-of-war and stringy siphonophores prey on other organisms including small fish. Some of these species are justly feared by humans for their stings, which in some cases can be fatal. Certainly, most New Zealanders will have encountered cnidarians when rambling along beaches and fossicking in rock pools where sea anemones and diminutive bushy hydroids abound. In New Zealand’s fiords and in deeper water on seamounts, black corals and branching gorgonians can form veritable trees five metres high or more. In contrast, inland inhabitants of continental landmasses who have never, or rarely, seen an ocean or visited a seashore can hardly be impressed with the Cnidaria as a phylum – freshwater cnidarians are relatively few, restricted to tiny hydras, the branching hydroid Cordylophora, and rare medusae. Worldwide, there are about 10,000 described species, with perhaps half as many again undescribed. All cnidarians have nettle cells known as nematocysts (or cnidae – from the Greek, knide, a nettle), extraordinarily complex structures that are effectively invaginated coiled tubes within a cell. -
Complete Mitochondrial Genome of Echinophyllia Aspera (Scleractinia
A peer-reviewed open-access journal ZooKeys 793: 1–14 (2018) Complete mitochondrial genome of Echinophyllia aspera... 1 doi: 10.3897/zookeys.793.28977 RESEARCH ARTICLE http://zookeys.pensoft.net Launched to accelerate biodiversity research Complete mitochondrial genome of Echinophyllia aspera (Scleractinia, Lobophylliidae): Mitogenome characterization and phylogenetic positioning Wentao Niu1, Shuangen Yu1, Peng Tian1, Jiaguang Xiao1 1 Laboratory of Marine Biology and Ecology, Third Institute of Oceanography, State Oceanic Administration, Xiamen, China Corresponding author: Wentao Niu ([email protected]) Academic editor: B.W. Hoeksema | Received 9 August 2018 | Accepted 20 September 2018 | Published 29 October 2018 http://zoobank.org/8CAEC589-89C7-4D1D-BD69-1DB2416E2371 Citation: Niu W, Yu S, Tian P, Xiao J (2018) Complete mitochondrial genome of Echinophyllia aspera (Scleractinia, Lobophylliidae): Mitogenome characterization and phylogenetic positioning. ZooKeys 793: 1–14. https://doi. org/10.3897/zookeys.793.28977 Abstract Lack of mitochondrial genome data of Scleractinia is hampering progress across genetic, systematic, phy- logenetic, and evolutionary studies concerning this taxon. Therefore, in this study, the complete mitog- enome sequence of the stony coral Echinophyllia aspera (Ellis & Solander, 1786), has been decoded for the first time by next generation sequencing and genome assembly. The assembled mitogenome is 17,697 bp in length, containing 13 protein coding genes (PCGs), two transfer RNAs and two ribosomal RNAs. It has the same gene content and gene arrangement as in other Scleractinia. All genes are encoded on the same strand. Most of the PCGs use ATG as the start codon except for ND2, which uses ATT as the start codon. The A+T content of the mitochondrial genome is 65.92% (25.35% A, 40.57% T, 20.65% G, and 13.43% for C). -
Characterization of the Complete Mitochondrial Genome Sequences of Three Merulinidae Corals and Novel Insights Into the Phylogenetics
Characterization of the complete mitochondrial genome sequences of three Merulinidae corals and novel insights into the phylogenetics Wentao Niu*, Jiaguang Xiao*, Peng Tian, Shuangen Yu, Feng Guo, Jianjia Wang and Dingyong Huang Laboratory of Marine Biology and Ecology, Third Institute of Oceanography, Ministry of Natural Resources, Xiamen, Fujian, China * These authors contributed equally to this work. ABSTRACT Over the past few decades, modern coral taxonomy, combining morphology and molecular sequence data, has resolved many long-standing questions about sclerac- tinian corals. In this study, we sequenced the complete mitochondrial genomes of three Merulinidae corals (Dipsastraea rotumana, Favites pentagona, and Hydnophora exesa) for the first time using next-generation sequencing. The obtained mitogenome sequences ranged from 16,466 bp (D. rotumana) to 18,006 bp (F. pentagona) in length, and included 13 unique protein-coding genes (PCGs), two transfer RNA genes, and two ribosomal RNA genes . Gene arrangement, nucleotide composition, and nucleotide bias of the three Merulinidae corals were canonically identical to each other and consistent with other scleractinian corals. We performed a Bayesian phylogenetic reconstruction based on 13 protein-coding sequences of 86 Scleractinia species. The results showed that the family Merulinidae was conventionally nested within the robust branch, with H. exesa clustered closely with F. pentagona and D. rotumana clustered closely with Favites abdita. This study provides novel insight into the phylogenetics -
Brain Corals
OPEN ACCESS Freely available online e t Poultry, Fisheries & Wildlife Sciences ISSN: 2375-446X Editorial Brain Corals * Arsalan Egbal Department of Zoology, University of Inuka, Jacmel, Haiti ABOUT THE STUDY WHITE BAND DISEASE Brain coral may be a common name given to varied corals White band disease was discovered when biologists observed the within the families Mussidae and Merulinidae, so called thanks to peeling of tissue from colonies of elkhorn and staghorn (Acropora their generally spheroid shape and grooved surface which spp.) corals in waters of the U.S. Virgin Islands. This tissue loss resembles a brain. Usually they are found in shallow warm water resulted during a distinct line of bare white skeleton, after which coral reefs altogether the world's oceans. They’re a part of the this disease is named. Although scientists are unsure about the Cnidaria, in a class called Anthozoa or "flower animals. Life span explanation for this disease, it's suspected that algal overgrowth of of these interesting looking organisms is 900 years and may grow the coral maybe the first cause. White band disease progresses as tall as six feet. Each stony coral is made by genetically identical from the bottom of the colony up towards the ideas of the polyps which secrete a tough exoskeleton of carbonate. This branches. Bare, white coral skeleton is left behind, colonized by makes stony coral one among the foremost important reef filamentous algae. White band disease has had a devastating builders. In feeding, these brainy corals extend their tentacles in impact on the corals within the Caribbean, with the infection of the dark, which rope in small drifting organisms. -
Notification to the Parties No. 2018/100
CONVENTION ON INTERNATIONAL TRADE IN ENDANGERED SPECIES OF WILD FAUNA AND FLORA NOTIFICATION TO THE PARTIES No. 2018/100 Geneva, 17 December 2018 CONCERNING: Standard nomenclature Standard references to be considered at CoP18 1. In Resolution Conf. 12.11 (Rev. CoP17) on Standard nomenclature, the Conference of the Parties RECOMMENDS, in paragraph 2 i), that: the Secretariat be provided with the citations (and ordering information) of checklists that will be nominated for standard references at least six months before the meeting of the Conference of the Parties at which such checklists will be considered. The Secretariat shall include such information in a Notification to the Parties so that Parties can obtain copies to review if they wish before the meeting. 2. In compliance with this recommendation, the nomenclature specialists for the Animals and Plants Committees have proposed the citations of checklists that will be nominated for taxonomic standard references at the 18th meeting of the Conference of the Parties (CoP18, Colombo, 2019). These are listed below, along with a link to where each reference can be accessed or ordered. FAUNA 3. The proposed standard references for fauna are as follows: Mammalia Kitchener A. C., Breitenmoser-Würsten CH., Eizirik E., Gentry A., Werdelin L., Wilting A., Yamaguchi N., Abramov A. V., Christiansen P., Driscoll C., Duckworth J. W., Johnson W., Luo S.-J., Meijaard E., O’Donoghue P., Sanderson J., Seymour K., Bruford M., Groves C., Hoffmann M., Nowell K., Timmons Z. and Tobe S. (2017). A revised taxonomy of the Felidae. The final report of the Cat Classification Task Force of the IUCN/SSC Cat Specialist Group. -
New Genus and Species Record of Reef Coral Micromussa Amakusensis In
Ng et al. Marine Biodiversity Records (2019) 12:17 https://doi.org/10.1186/s41200-019-0176-3 RESEARCH Open Access New genus and species record of reef coral Micromussa amakusensis in the southern South China Sea Chin Soon Lionel Ng1,2, Sudhanshi Sanjeev Jain1, Nhung Thi Hong Nguyen1, Shu Qin Sam2, Yuichi Preslie Kikuzawa2, Loke Ming Chou1,2 and Danwei Huang1,2* Abstract Background: Recent taxonomic revisions of zooxanthellate scleractinian coral taxa have inevitably resulted in confusion regarding the geographic ranges of even the most well-studied species. For example, the recorded distribution ranges of Stylophora pistillata and Pocillopora damicornis, two of the most intensely researched experimental subjects, have been restricted dramatically due to confounding cryptic species. Micromussa is an Indo-Pacific genus that has been revised recently. The revision incorporated five new members and led to substantial range restriction of its type species and only initial member M. amakusensis to Japan and the Coral Triangle. Here, we report the presence of Micromussa amakusensis in Singapore using phylogenetic methods. Results: A total of seven M. amakusensis colonies were recorded via SCUBA surveys at four coral reef sites south of mainland Singapore, including two artificial seawall sites. Colonies were found encrusting on dead coral skeletons or bare rocky substrate between 2 and 5 m in depth. Morphological examination and phylogenetic analyses support the identity of these colonies as M. amakusensis, but the phylogeny reconstruction also shows that they form relatively distinct branches with unexpected lineage diversity. Conclusions: Our results and verified geographic records of M. amakusensis illustrate that, outside the type locality in Japan, the species can also be found widely in the South China Sea. -
Decadal Environmental 'Memory' in a Reef Coral?
Mar Biol (2015) 162:479–483 DOI 10.1007/s00227-014-2596-2 SHORT NOTE Decadal environmental ‘memory’ in a reef coral? B. E. Brown · R. P. Dunne · A. J. Edwards · M. J. Sweet · N. Phongsuwan Received: 26 October 2014 / Accepted: 4 December 2014 / Published online: 12 December 2014 © Springer-Verlag Berlin Heidelberg 2014 Abstract West sides of the coral Coelastrea aspera, retention of an environmental ‘memory’ raises important which had achieved thermo-tolerance after previous expe- questions about the acclimatisation potential of reef corals rience of high solar irradiance in the field, were rotated in a changing climate and the mechanisms by which it is through 180o on a reef flat in Phuket, Thailand (7o50´N, achieved. 98o25.5´E), in 2000 in a manipulation experiment and secured in this position. In 2010, elevated sea temperatures caused extreme bleaching in these corals, with former west Introduction sides of colonies (now facing east) retaining four times higher symbiont densities than the east sides of control Variability in bleaching patterns within individual coral colonies, which had not been rotated and which had been colonies, subject to elevated temperatures, has been well subject to a lower irradiance environment than west sides documented in the field. Such patterns have been attributed throughout their lifetime. The reduced bleaching suscepti- to spatial distributions of resident symbiotic algal clades bility of the former west sides in 2010, compared to han- (Rowan et al. 1997), localised high irradiance stress falling dling controls, suggests that the rotated corals had retained on upper coral surfaces (Fitt et al. 1993) and experience- a ‘memory’ of their previous high irradiance history despite mediated physiological tolerances (Brown et al. -
Taxonomic Classification of the Reef Coral Family
Zoological Journal of the Linnean Society, 2016, 178, 436–481. With 14 figures Taxonomic classification of the reef coral family Lobophylliidae (Cnidaria: Anthozoa: Scleractinia) DANWEI HUANG1*, ROBERTO ARRIGONI2,3*, FRANCESCA BENZONI3, HIRONOBU FUKAMI4, NANCY KNOWLTON5, NATHAN D. SMITH6, JAROSŁAW STOLARSKI7, LOKE MING CHOU1 and ANN F. BUDD8 1Department of Biological Sciences and Tropical Marine Science Institute, National University of Singapore, Singapore 117543, Singapore 2Red Sea Research Center, Division of Biological and Environmental Science and Engineering, King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia 3Department of Biotechnology and Biosciences, University of Milano-Bicocca, Piazza della Scienza 2, 20126 Milan, Italy 4Department of Marine Biology and Environmental Science, University of Miyazaki, Miyazaki 889- 2192, Japan 5Department of Invertebrate Zoology, National Museum of Natural History, Smithsonian Institution, Washington, DC 20013, USA 6The Dinosaur Institute, Natural History Museum of Los Angeles County, 900 Exposition Boulevard, Los Angeles, CA 90007, USA 7Institute of Paleobiology, Polish Academy of Sciences, Twarda 51/55, PL-00-818, Warsaw, Poland 8Department of Earth and Environmental Sciences, University of Iowa, Iowa City, IA 52242, USA Received 14 July 2015; revised 19 December 2015; accepted for publication 31 December 2015 Lobophylliidae is a family-level clade of corals within the ‘robust’ lineage of Scleractinia. It comprises species traditionally classified as Indo-Pacific ‘mussids’, ‘faviids’, and ‘pectiniids’. Following detailed revisions of the closely related families Merulinidae, Mussidae, Montastraeidae, and Diploastraeidae, this monograph focuses on the taxonomy of Lobophylliidae. Specifically, we studied 44 of a total of 54 living lobophylliid species from all 11 genera based on an integrative analysis of colony, corallite, and subcorallite morphology with molecular sequence data. -
Faviidae Coral Colonization Living and Growing on Agricultural Waste-Materialized Artificial Substrate Laurentius T
Faviidae coral colonization living and growing on agricultural waste-materialized artificial substrate Laurentius T. X. Lalamentik, Rene C. Kepel, Lawrence J. L. Lumingas, Unstain N. W. J. Rembet, Silvester B. Pratasik, Desy M. H. Mantiri Faculty of Fisheries and Marine Science, Sam Ratulangi University, Jl. Kampus Bahu, Manado-95115, North Sulawesi, Indonesia. Corresponding author: L. T. X. Lalamentik, [email protected] Abstract. A study on colonization of Faviidae corals on the agricultural waste-materialized artificial substrate was conducted in Selat Besar, Ratatotok district, southeast Minahasa regency, North Sulawesi. Nine artificial substrates modules made of mixture of cement, sand, padi husk, and bamboo were placed for about 5 years on the sea bottom of Selat Besar waters. All corals of family Faviidae found on the artificial substrate were collected. Results showed that Faviidae corals could live and develop on those substrates. Fifteen species of 8 genera of family Faviidae were recorded in the present study, Dipsastraea pallida, D. laxa, D. matthaii, Favites pentagona, F. complanata, Paragoniastrea russelli, Oulophyllia bennettae, Echinopora gemmacea, E. lamellosa, Goniastrea stelligera, G. favulus, G. pectinata, Coelastrea aspera, Platygyra daedalea, and P. sinensis. Mean number of colonies of Faviidae corals was 3 col mod-1, while mean diameter of the corals attached on the artificial substrate was 2.35 cm long. The distribution pattern of Faviidae corals was uniform. The diversity of Faviidae corals on the artificial substrate was low (H’ = 2.568). The dominance index showed no dominant species (D = 0.089). In addition, the artificial substrate module in this study could become an alternative technique to rehabilitate the degraded coral reefs. -
Factors Mediating Metamorphosis of Leptastrea Purpurea (Cnidaria: Scleractinia) Planulae
Factors mediating metamorphosis of Leptastrea purpurea (Cnidaria: scleractinia) planulae Michele A. MCCormick INTRODUCTION Many marine invertebrates have a planktonic dispersal phase before settling into a benthic adult lifestyle. How the larvae find a suitable habitat on which to settle has been the subject of much research. It has become increasingly ev·ident in recent years that active habitat selection by larvae plays an important role in the ultimate distribution of the adults of many species. The ability of larvae to detect habitat-specific cues has been recognized for a range of phyla that is almost as diverse as the cues themselves, and this ability evidently allows the larvae to maximize their own post-settlement survival. Water flow, light levels, surface texture and/or composition, lipophilic (suface-bound) or hydrophilic (water-soluble) chemical cues arising from conspecifics, prey, hosts, or surface-associated biofilms have all been implicated as natural sources of inducers. Sometimes it appears that an intricate, sequential combination of factors must be present for successful settlement (Crisp, 1974), and these requirements can vary appreciably even among similar species. The terms settlement and metamorphosis describe both the behavioral and physiological transition from the mobile larvae to the benthic adult. Settlement has been described as a reversible, substrate exploratory behavior that culminates in attachment, whereas metamorphosis is a largely non-reversible physiological change (Pawlik, 1992). Oftentimes, however, the terms are used interchangeably. Because attachment without metamorphosis was rarely seen by the 16-24 hour endpoint in the experiments of the scleractinian coral Leptastrea purpurea described here, only complete metamorphosis was used to monitor recruitment success.