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The Basilinna Genus (Aves: Trochilidae): an Evaluation Based on Molecular Evidence and Implications for the Genus Hylocharis
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Revista Mexicana de Biodiversidad 85: 797-807, 2014 DOI: 10.7550/rmb.35769 The Basilinna genus (Aves: Trochilidae): an evaluation based on molecular evidence and implications for the genus Hylocharis El género Basilinna (Aves: Trochilidae): una evaluación basada en evidencia molecular e implicaciones para el género Hylocharis Blanca Estela Hernández-Baños1 , Luz Estela Zamudio-Beltrán1, Luis Enrique Eguiarte-Fruns2, John Klicka3 and Jaime García-Moreno4 1Museo de Zoología, Departamento de Biología Evolutiva, Facultad de Ciencias, Universidad Nacional Autónoma de México. Apartado postal 70- 399, 04510 México, D. F., Mexico. 2Departamento de Ecología Evolutiva, Instituto de Ecología, Universidad Nacional Autónoma de México. Apartado postal 70-275, 04510 México, D. F., Mexico. 3Burke Museum of Natural History and Culture, University of Washington, Box 353010, Seattle, WA, USA. 4Amphibian Survival Alliance, PO Box 20164, 1000 HD Amsterdam, The Netherlands. [email protected] Abstract. Hummingbirds are one of the most diverse families of birds and the phylogenetic relationships within the group have recently begun to be studied with molecular data. Most of these studies have focused on the higher level classification within the family, and now it is necessary to study the relationships between and within genera using a similar approach. Here, we investigated the taxonomic status of the genus Hylocharis, a member of the Emeralds complex, whose relationships with other genera are unclear; we also investigated the existence of the Basilinna genus. We obtained sequences of mitochondrial (ND2: 537 bp) and nuclear genes (AK-5 intron: 535 bp, and c-mos: 572 bp) for 6 of the 8 currently recognized species and outgroups. -
The Coral Trait Database, a Curated Database of Trait Information for Coral Species from the Global Oceans
www.nature.com/scientificdata OPEN The Coral Trait Database, a curated SUBJECT CATEGORIES » Community ecology database of trait information for » Marine biology » Biodiversity coral species from the global oceans » Biogeography 1 2 3 2 4 Joshua S. Madin , Kristen D. Anderson , Magnus Heide Andreasen , Tom C.L. Bridge , , » Coral reefs 5 2 6 7 1 1 Stephen D. Cairns , Sean R. Connolly , , Emily S. Darling , Marcela Diaz , Daniel S. Falster , 8 8 2 6 9 3 Erik C. Franklin , Ruth D. Gates , Mia O. Hoogenboom , , Danwei Huang , Sally A. Keith , 1 2 2 4 10 Matthew A. Kosnik , Chao-Yang Kuo , Janice M. Lough , , Catherine E. Lovelock , 1 1 1 11 12 13 Osmar Luiz , Julieta Martinelli , Toni Mizerek , John M. Pandolfi , Xavier Pochon , , 2 8 2 14 Morgan S. Pratchett , Hollie M. Putnam , T. Edward Roberts , Michael Stat , 15 16 2 Carden C. Wallace , Elizabeth Widman & Andrew H. Baird Received: 06 October 2015 28 2016 Accepted: January Trait-based approaches advance ecological and evolutionary research because traits provide a strong link to Published: 29 March 2016 an organism’s function and fitness. Trait-based research might lead to a deeper understanding of the functions of, and services provided by, ecosystems, thereby improving management, which is vital in the current era of rapid environmental change. Coral reef scientists have long collected trait data for corals; however, these are difficult to access and often under-utilized in addressing large-scale questions. We present the Coral Trait Database initiative that aims to bring together physiological, morphological, ecological, phylogenetic and biogeographic trait information into a single repository. -
Biological Results of the Chatham Islands 1954 Expedition
ISSN 2538-1016; 29 NEW ZEALAND DEPARTMENT OF SCIENTIFIC AND INDUSTRIAL RESEARCH BULLETIN 139 (6) Biological Results of The Chatham Islands 1954 Expedition PART 6 Scleractinia BY DONALD F. SQUIRES New Zealand Oceanographic Institute Memoir No. 29 1964 This publication is the sixth part of the Department of Scientificand Industrial Research Bulletin 139, which records the Biological Results of the Chatham Islands 1954 Expedition. Parts already published are: Part 1. Crustacea, by R. K. Dell, N. S. Jones, and J. C. Yaldwyn. Part 2. Archibenthal and Littoral Echinoderms, by H. Barraclough Fell. Part 3. Polychaeta Errantia, by G. A. Knox. Part 4. Marine Mollusca, by R. K. Dell; Sipunculoidea, by S. J. Edmonds. Part 5. Porifera: Demospongiae, by Patricia R. Bergquist; Porifera: Keratosa, by Patricia R. Bergquist; Crustacea Isopoda: Bopyridae, by R. B. Pike; Crustacea Isopoda: Serolidae, by D. E. Hurley; Hydroida, by Patricia M. Ralph. Additional parts are in preparation. A "General Account" of the Expedition was published as N.Z. Department of Scientific and Industrial Research Bulletin No. 122 (1957). BIOLOGICAL RESULTS OF THE CHATHAM ISLANDS 1954 EXPEDITION PART 6-SCLERACTINIA This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivs 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-nd/3.0/ Photograph: G. A. Knox. The Sero/is bromleyana - Spatangus multispinus community on the sorting screen. Aberrant growth form of Flabellum knoxi is in the lower left(see also plate 1, figs. 4-6). The abundant tubes are those of Hya!inoecia tubicola, the large starfish is Zoroaster spinu!osus, the echinoids Parameretia multituberculata. -
1 AOS Classification Committee – North and Middle America Proposal Set 2020-A 4 September 2019 No. Page Title 01 02 Change Th
AOS Classification Committee – North and Middle America Proposal Set 2020-A 4 September 2019 No. Page Title 01 02 Change the English name of Olive Warbler Peucedramus taeniatus to Ocotero 02 05 Change the generic classification of the Trochilini (part 1) 03 11 Change the generic classification of the Trochilini (part 2) 04 18 Split Garnet-throated Hummingbird Lamprolaima rhami 05 22 Recognize Amazilia alfaroana as a species not of hybrid origin, thus moving it from Appendix 2 to the main list 06 26 Change the linear sequence of species in the genus Dendrortyx 07 28 Make two changes concerning Starnoenas cyanocephala: (a) assign it to the new monotypic subfamily Starnoenadinae, and (b) change the English name to Blue- headed Partridge-Dove 08 32 Recognize Mexican Duck Anas diazi as a species 09 36 Split Royal Tern Thalasseus maximus into two species 10 39 Recognize Great White Heron Ardea occidentalis as a species 11 41 Change the English name of Checker-throated Antwren Epinecrophylla fulviventris to Checker-throated Stipplethroat 12 42 Modify the linear sequence of species in the Phalacrocoracidae 13 49 Modify various linear sequences to reflect new phylogenetic data 1 2020-A-1 N&MA Classification Committee p. 532 Change the English name of Olive Warbler Peucedramus taeniatus to Ocotero Background: “Warbler” is perhaps the most widely used catch-all designation for passerines. Its use as a meaningful taxonomic indicator has been defunct for well over a century, as the “warblers” encompass hundreds of thin-billed, insectivorous passerines across more than a dozen families worldwide. This is not itself an issue, as many other passerine names (flycatcher, tanager, sparrow, etc.) share this common name “polyphyly”, and conventions or modifiers are widely used to designate and separate families that include multiple groups. -
Coral Feeding on Microalgae Assessed with Molecular Trophic Markers
Molecular Ecology (2013) doi: 10.1111/mec.12486 Coral feeding on microalgae assessed with molecular trophic markers MIGUEL C. LEAL,*† CHRISTINE FERRIER-PAGES,‡ RICARDO CALADO,* MEGAN E. THOMPSON,† MARC E. FRISCHER† and JENS C. NEJSTGAARD† *Departamento de Biologia & CESAM, Universidade de Aveiro, Campus Universitario de Santiago, 3810-193 Aveiro, Portugal, †Skidaway Institute of Oceanography, 10 Ocean Science Circle, 31411 Savannah, GA, USA, ‡Centre Scientifique de Monaco, Avenue St-Martin, 98000 Monaco, Monaco Abstract Herbivory in corals, especially for symbiotic species, remains controversial. To investi- gate the capacity of scleractinian and soft corals to capture microalgae, we conducted controlled laboratory experiments offering five algal species: the cryptophyte Rhodo- monas marina, the haptophytes Isochrysis galbana and Phaeocystis globosa, and the diatoms Conticribra weissflogii and Thalassiosira pseudonana. Coral species included the symbiotic soft corals Heteroxenia fuscescens and Sinularia flexibilis, the asymbiotic scleractinian coral Tubastrea coccinea, and the symbiotic scleractinian corals Stylophora pistillata, Pavona cactus and Oculina arbuscula. Herbivory was assessed by end-point PCR amplification of algae-specific 18S rRNA gene fragments purified from coral tissue genomic DNA extracts. The ability to capture microalgae varied with coral and algal species and could not be explained by prey size or taxonomy. Herbivory was not detected in S. flexibilis and S. pistillata. P. globosa was the only algal prey that was never captured by any coral. Although predation defence mechanisms have been shown for Phaeocystis spp. against many potential predators, this study is the first to suggest this for corals. This study provides new insights into herbivory in symbiotic corals and suggests that corals may be selective herbivorous feeders. -
Exceptional Development of Dissepimental Coenosteum in the New Eocene Scleractinian Coral Genus Nancygyra (Ypresian, Monte Postale, NE Italy)
TO L O N O G E I L C A A P I ' T A A T L E I I A Bollettino della Società Paleontologica Italiana, 59 (3), 2020, 291-298. Modena C N O A S S. P. I. Exceptional development of dissepimental coenosteum in the new Eocene scleractinian coral genus Nancygyra (Ypresian, Monte Postale, NE Italy) Francesca R. Bosellini*, Jarosław Stolarski, Cesare Andrea Papazzoni & Alessandro Vescogni F.R. Bosellini, Dipartimento di Scienze Chimiche e Geologiche, Università degli Studi di Modena e Reggio Emilia, Via Campi 103, I-41125 Modena, Italy; [email protected] *corresponding author J. Stolarski, Institute of Paleobiology, Polish Academy of Sciences, Twarda 51/55, PL-00-818 Warsaw, Poland; [email protected] C.A. Papazzoni, Dipartimento di Scienze Chimiche e Geologiche, Università degli Studi di Modena e Reggio Emilia, Via Campi 103, I-41125 Modena, Italy; [email protected] A. Vescogni, Dipartimento di Scienze Chimiche e Geologiche, Università degli Studi di Modena e Reggio Emilia, Via Campi 103, I-41125 Modena, Italy; [email protected] KEY WORDS - Aphroid colony, dissepiments, Euphylliidae, coral diversity, EECO, lower Eocene. ABSTRACT - In colonial corals, the polyps are interconnected with a common tissue called coenosarc. Polyps and coenosarc secrete distinct skeletal structures: corallites and coenosteum, respectively. Ratio of corallite to coenosteum development may vary resulting in two extreme architectural patterns of coral colonies: corallite-dominated (e.g., cerioid) and coenosteum-dominated (e.g., aphroid) colonies. A large suite of examples of these patterns can be identified among extant and fossil corals, including Paleozoic rugosan corals. -
'Bogotá' Type Specimens of the Hummingbird Genus Adelomyia
Thomas M. Donegan & Jorge Enrique Avendaño 195 Bull. B.O.C. 2015 135(3) ‘Bogotá’ type specimens of the hummingbird genus Adelomyia, with diagnosis of an overlooked subspecies from the East Andes of Colombia by Thomas M. Donegan & Jorge Enrique Avendaño Received 25 September 2014 Summary.—Molecular work has revealed that Speckled Hummingbirds Adelomyia melanogenys in the East Andes of dpto. Santander, Colombia, represent a distinct lineage not previously recognised taxonomically. Most specimens from this region differ from others taken in the East Andes by their more extensively rufous and speckled posterior underparts. Sound-recordings and biometrics showed broad overlap for all variables in both populations. Statistically significant but non- diagnosable differences exist in the number of notes in trills of songs, speed of calls and bill length. The type of Adelomyia melanogenys (Fraser 1840) is a ‘Bogotá’ specimen similar to birds from dpto. Cundinamarca, Colombia. Trochilus sabinae Bourcier & Mulsant, 1846, is also based on a ‘Colombia’ specimen. A possible type was identified that resembles the Santander population in its underparts.Adelomyia simplex Boucard, 1893, is based on a leucistic ‘Bogotá’ specimen more consistent with the Cundinamarca population than others. If the Santander population is recognised taxonomically, it is suggested to clarify the type locality for sabinae as the west slope of the East Andes in Santander or Boyacá, but molecular work is needed to confirm this. A. m. inornata in the southern Andes has a faster call and distinctive plumage, and perhaps merits species rank. The genus Adelomyia is monospecific, comprising the polytypic Speckled Hummingbird A. melanogenys, a widespread Andean hummingbird. -
Cop13 Analyses Cover 29 Jul 04.Qxd
IUCN/TRAFFIC Analyses of the Proposals to Amend the CITES Appendices at the 13th Meeting of the Conference of the Parties Bangkok, Thailand 2-14 October 2004 Prepared by IUCN Species Survival Commission and TRAFFIC Production of the 2004 IUCN/TRAFFIC Analyses of the Proposals to Amend the CITES Appendices was made possible through the support of: The Commission of the European Union Canadian Wildlife Service Ministry of Agriculture, Nature and Food Quality, Department for Nature, the Netherlands Federal Agency for Nature Conservation, Germany Federal Veterinary Office, Switzerland Ministerio de Medio Ambiente, Dirección General para la Biodiversidad (Spain) Ministère de l'écologie et du développement durable, Direction de la nature et des paysages (France) IUCN-The World Conservation Union IUCN-The World Conservation Union brings together states, government agencies and a diverse range of non-governmental organizations in a unique global partnership - over 1 000 members in some 140 countries. As a Union, IUCN seeks to influence, encourage and assist societies throughout the world to conserve the integrity and diversity of nature and to ensure that any use of natural resources is equitable and ecologically sustainable. IUCN builds on the strengths of its members, networks and partners to enhance their capacity and to support global alliances to safeguard natural resources at local, regional and global levels. The Species Survival Commission (SSC) is the largest of IUCN’s six volunteer commissions. With 8 000 scientists, field researchers, government officials and conservation leaders, the SSC membership is an unmatched source of information about biodiversity conservation. SSC members provide technical and scientific advice to conservation activities throughout the world and to governments, international conventions and conservation organizations. -
Dieter Thomas Tietze Editor How They Arise, Modify and Vanish
Fascinating Life Sciences Dieter Thomas Tietze Editor Bird Species How They Arise, Modify and Vanish Fascinating Life Sciences This interdisciplinary series brings together the most essential and captivating topics in the life sciences. They range from the plant sciences to zoology, from the microbiome to macrobiome, and from basic biology to biotechnology. The series not only highlights fascinating research; it also discusses major challenges associated with the life sciences and related disciplines and outlines future research directions. Individual volumes provide in-depth information, are richly illustrated with photographs, illustrations, and maps, and feature suggestions for further reading or glossaries where appropriate. Interested researchers in all areas of the life sciences, as well as biology enthusiasts, will find the series’ interdisciplinary focus and highly readable volumes especially appealing. More information about this series at http://www.springer.com/series/15408 Dieter Thomas Tietze Editor Bird Species How They Arise, Modify and Vanish Editor Dieter Thomas Tietze Natural History Museum Basel Basel, Switzerland ISSN 2509-6745 ISSN 2509-6753 (electronic) Fascinating Life Sciences ISBN 978-3-319-91688-0 ISBN 978-3-319-91689-7 (eBook) https://doi.org/10.1007/978-3-319-91689-7 Library of Congress Control Number: 2018948152 © The Editor(s) (if applicable) and The Author(s) 2018. This book is an open access publication. Open Access This book is licensed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license and indicate if changes were made. -
Taxonomy and Phylogenetic Relationships of the Coral Genera Australomussa and Parascolymia (Scleractinia, Lobophylliidae)
Contributions to Zoology, 83 (3) 195-215 (2014) Taxonomy and phylogenetic relationships of the coral genera Australomussa and Parascolymia (Scleractinia, Lobophylliidae) Roberto Arrigoni1, 7, Zoe T. Richards2, Chaolun Allen Chen3, 4, Andrew H. Baird5, Francesca Benzoni1, 6 1 Dept. of Biotechnology and Biosciences, University of Milano-Bicocca, 20126, Milan, Italy 2 Aquatic Zoology, Western Australian Museum, 49 Kew Street, Welshpool, WA 6106, Australia 3Biodiversity Research Centre, Academia Sinica, Nangang, Taipei 115, Taiwan 4 Institute of Oceanography, National Taiwan University, Taipei 106, Taiwan 5 ARC Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, QLD 4811, Australia 6 Institut de Recherche pour le Développement, UMR227 Coreus2, 101 Promenade Roger Laroque, BP A5, 98848 Noumea Cedex, New Caledonia 7 E-mail: [email protected] Key words: COI, evolution, histone H3, Lobophyllia, Pacific Ocean, rDNA, Symphyllia, systematics, taxonomic revision Abstract Molecular phylogeny of P. rowleyensis and P. vitiensis . 209 Utility of the examined molecular markers ....................... 209 Novel micromorphological characters in combination with mo- Acknowledgements ...................................................................... 210 lecular studies have led to an extensive revision of the taxonomy References ...................................................................................... 210 and systematics of scleractinian corals. In the present work, we Appendix ....................................................................................... -
Resurrecting a Subgenus to Genus: Molecular Phylogeny of Euphyllia and Fimbriaphyllia (Order Scleractinia; Family Euphylliidae; Clade V)
Resurrecting a subgenus to genus: molecular phylogeny of Euphyllia and Fimbriaphyllia (order Scleractinia; family Euphylliidae; clade V) Katrina S. Luzon1,2,3,*, Mei-Fang Lin4,5,6,*, Ma. Carmen A. Ablan Lagman1,7, Wilfredo Roehl Y. Licuanan1,2,3 and Chaolun Allen Chen4,8,9,* 1 Biology Department, De La Salle University, Manila, Philippines 2 Shields Ocean Research (SHORE) Center, De La Salle University, Manila, Philippines 3 The Marine Science Institute, University of the Philippines, Quezon City, Philippines 4 Biodiversity Research Center, Academia Sinica, Taipei, Taiwan 5 Department of Molecular and Cell Biology, James Cook University, Townsville, Australia 6 Evolutionary Neurobiology Unit, Okinawa Institute of Science and Technology Graduate University, Okinawa, Japan 7 Center for Natural Sciences and Environmental Research (CENSER), De La Salle University, Manila, Philippines 8 Taiwan International Graduate Program-Biodiversity, Academia Sinica, Taipei, Taiwan 9 Institute of Oceanography, National Taiwan University, Taipei, Taiwan * These authors contributed equally to this work. ABSTRACT Background. The corallum is crucial in building coral reefs and in diagnosing systematic relationships in the order Scleractinia. However, molecular phylogenetic analyses revealed a paraphyly in a majority of traditional families and genera among Scleractinia showing that other biological attributes of the coral, such as polyp morphology and reproductive traits, are underutilized. Among scleractinian genera, the Euphyllia, with nine nominal species in the Indo-Pacific region, is one of the groups Submitted 30 May 2017 that await phylogenetic resolution. Multiple genetic markers were used to construct Accepted 31 October 2017 Published 4 December 2017 the phylogeny of six Euphyllia species, namely E. ancora, E. divisa, E. -
Journal of the East Africa Natural History Society and National Museum
JOURNAL OF THE EAST AFRICA NATURAL HISTORY SOCIETY AND NATIONAL MUSEUM 15 October, 1978 Vol. 31 No. 167 A CHECKLIST OF mE SNAKES OF KENYA Stephen Spawls 35 WQodland Rise, Muswell Hill, London NIO, England ABSTRACT Loveridge (1957) lists 161 species and subspecies of snake from East Mrica. Eighty-nine of these belonging to some 41 genera were recorded from Kenya. The new list contains some 106 forms of 46 genera. - Three full species have been deleted from Loveridge's original checklist. Typhlops b. blanfordii has been synonymised with Typhlops I. lineolatus, Typhlops kaimosae has been synonymised with Typhlops angolensis (Roux-Esteve 1974) and Co/uber citeroii has been synonymised with Meizodon semiornatus (Lanza 1963). Of the 20 forms added to the list, 12 are forms collected for the first time in Kenya but occurring outside its political boundaries and one, Atheris desaixi is a new species, the holotype and paratypes being collected within Kenya. There has also been a large number of changes amongst the 89 original species as a result of revisionary systematic studies. This accounts for the other additions to the list. INTRODUCTION The most recent checklist dealing with the snakes of Kenya is Loveridge (1957). Since that date there has been a significant number of developments in the Kenyan herpetological field. This paper intends to update the nomenclature in the part of the checklist that concerns the snakes of Kenya and to extend the list to include all the species now known to occur within the political boundaries of Kenya. It also provides the range of each species within Kenya with specific locality records .