A Targeted Rnai Screen Identifies Endocytic Trafficking Factors That
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Sorting Nexins in Protein Homeostasis Sara E. Hanley1,And Katrina F
Preprints (www.preprints.org) | NOT PEER-REVIEWED | Posted: 6 November 2020 doi:10.20944/preprints202011.0241.v1 Sorting nexins in protein homeostasis Sara E. Hanley1,and Katrina F. Cooper2* 1Department of Molecular Biology, Graduate School of Biomedical Sciences, Rowan University, Stratford, NJ, 08084, USA 1 [email protected] 2 [email protected] * [email protected] Tel: +1 (856)-566-2887 1Department of Molecular Biology, Graduate School of Biomedical Sciences, Rowan University, Stratford, NJ, 08084, USA Abstract: Sorting nexins (SNXs) are a highly conserved membrane-associated protein family that plays a role in regulating protein homeostasis. This family of proteins is unified by their characteristic phox (PX) phosphoinositides binding domain. Along with binding to membranes, this family of SNXs also comprises a diverse array of protein-protein interaction motifs that are required for cellular sorting and protein trafficking. SNXs play a role in maintaining the integrity of the proteome which is essential for regulating multiple fundamental processes such as cell cycle progression, transcription, metabolism, and stress response. To tightly regulate these processes proteins must be expressed and degraded in the correct location and at the correct time. The cell employs several proteolysis mechanisms to ensure that proteins are selectively degraded at the appropriate spatiotemporal conditions. SNXs play a role in ubiquitin-mediated protein homeostasis at multiple levels including cargo localization, recycling, degradation, and function. In this review, we will discuss the role of SNXs in three different protein homeostasis systems: endocytosis lysosomal, the ubiquitin-proteasomal, and the autophagy-lysosomal system. The highly conserved nature of this protein family by beginning with the early research on SNXs and protein trafficking in yeast and lead into their important roles in mammalian systems. -
Sorting Nexin 27 Regulates the Lysosomal Degradation of Aquaporin-2 Protein in the Kidney Collecting Duct
cells Article Sorting Nexin 27 Regulates the Lysosomal Degradation of Aquaporin-2 Protein in the Kidney Collecting Duct Hyo-Jung Choi 1,2, Hyo-Ju Jang 1,3, Euijung Park 1,3, Stine Julie Tingskov 4, Rikke Nørregaard 4, Hyun Jun Jung 5 and Tae-Hwan Kwon 1,3,* 1 Department of Biochemistry and Cell Biology, School of Medicine, Kyungpook National University, Taegu 41944, Korea; [email protected] (H.-J.C.); [email protected] (H.-J.J.); [email protected] (E.P.) 2 New Drug Development Center, Daegu-Gyeongbuk Medical Innovation Foundation, Taegu 41061, Korea 3 BK21 Plus KNU Biomedical Convergence Program, Department of Biomedical Science, School of Medicine, Kyungpook National University, Taegu 41944, Korea 4 Department of Clinical Medicine, Aarhus University, Aarhus 8200, Denmark; [email protected] (S.J.T.); [email protected] (R.N.) 5 Division of Nephrology, Department of Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA; [email protected] * Correspondence: [email protected]; Tel.: +82-53-420-4825; Fax: +82-53-422-1466 Received: 30 March 2020; Accepted: 11 May 2020; Published: 13 May 2020 Abstract: Sorting nexin 27 (SNX27), a PDZ (Postsynaptic density-95/Discs large/Zonula occludens 1) domain-containing protein, cooperates with a retromer complex, which regulates intracellular trafficking and the abundance of membrane proteins. Since the carboxyl terminus of aquaporin-2 (AQP2c) has a class I PDZ-interacting motif (X-T/S-X-F), the role of SNX27 in the regulation of AQP2 was studied. Co-immunoprecipitation assay of the rat kidney demonstrated an interaction of SNX27 with AQP2. -
An Arf1 Synthetic Lethal Screen Identifies a New Clathrin Heavy
Copyright 1998 by the Genetics Society of America An arf1D Synthetic Lethal Screen Identi®es a New Clathrin Heavy Chain Conditional Allele That Perturbs Vacuolar Protein Transport in Saccharomyces cerevisiae Chih-Ying Chen and Todd R. Graham Department of Molecular Biology, Vanderbilt University, Nashville, Tennessee 37235 Manuscript received March 5, 1998 Accepted for publication June 16, 1998 ABSTRACT ADP-ribosylation factor (ARF) is a small GTP-binding protein that is thought to regulate the assembly of coat proteins on transport vesicles. To identify factors that functionally interact with ARF, we have performed a genetic screen in Saccharomyces cerevisiae for mutations that exhibit synthetic lethality with an arf1D allele and de®ned seven genes by complementation tests (SWA1-7 for synthetically lethal with arf1D). Most of the swa mutants exhibit phenotypes comparable to arf1D mutants such as temperature-conditional growth, hypersensitivity to ¯uoride ions, and partial protein transport and glycosylation defects. Here, we report that swa5-1 is a new temperature-sensitive allele of the clathrin heavy chain gene (chc1-5), which carries a frameshift mutation near the 39 end of the CHC1 open reading frame. This genetic interaction between arf1 and chc1 provides in vivo evidence for a role for ARF in clathrin coat assembly. Surprisingly, strains harboring chc1-5 exhibited a signi®cant defect in transport of carboxypeptidase Y or carboxypepti- dase S to the vacuole that was not observed in other chc1 ts mutants. The kinetics of invertase secretion or transport of alkaline phosphatase to the vacuole were not signi®cantly affected in the chc1-5 mutant, further implicating clathrin speci®cally in the Golgi to vacuole transport pathway for carboxypeptidase Y. -
ADP-Ribosylation Factor, a Small GTP-Binding Protein, Is Required for Binding of the Coatomer Protein Fl-COP to Golgi Membranes JULIE G
Proc. Natl. Acad. Sci. USA Vol. 89, pp. 6408-6412, July 1992 Biochemistry ADP-ribosylation factor, a small GTP-binding protein, is required for binding of the coatomer protein fl-COP to Golgi membranes JULIE G. DONALDSON*, DAN CASSEL*t, RICHARD A. KAHN*, AND RICHARD D. KLAUSNER* *Cell Biology and Metabolism Branch, National Institute of Child Health and Human Development, and tLaboratory of Biological Chemistry, Division of Cancer Treatment, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892 Communicated by Marc Kirschner, April 20, 1992 (receivedfor review February 11, 1992) ABSTRACT The coatomer is a cytosolic protein complex localized to the Golgi complex, although their functions have that reversibly associates with Golgi membranes and is Impli- not been defined. Distinct among these proteins is the ADP- cated in modulating Golgi membrane transport. The associa- ribosylation factor (ARF), originally identified as a cofactor tion of 13-COP, a component of coatomer, with Golgi mem- required for in vitro cholera toxin-catalyzed ADP- branes is enhanced by guanosine 5'-[v-thioltriphosphate ribosylation of the a subunit of the trimeric GTP-binding (GTP[yS]), a nonhydrolyzable analogue of GTP, and by a protein G, (G,.) (19). ARF is an abundant cytosolic protein mixture of aluminum and fluoride ions (Al/F). Here we show that reversibly associates with Golgi membranes (20, 21). that the ADP-ribosylation factor (ARF) is required for the ARF has been shown to be present on Golgi coated vesicles binding of (-COP. Thus, 13-COP contained in a coatomer generated in the presence of GTP[yS], but it is not a com- fraction that has been resolved from ARF does not bind to Golgi ponent of the cytosolic coatomer (22). -
Dynamin Action at the Final Stage of Clathrin- Mediated Endocytosis
Dynamin Action at the Final Stage of Clathrin- Mediated Endocytosis Ning Fang ( [email protected] ) Georgia State University https://orcid.org/0000-0003-4710-0984 Xiaodong Cheng Georgia State University Kuangcai Chen Georgia State University https://orcid.org/0000-0002-9321-9225 Bin Dong Georgia State University https://orcid.org/0000-0002-3196-0712 Meek Yang Georgia State University Seth Filbrun Georgia State University Yong Myoung Georgia State University Teng-Xiang Huang Georgia State University Yan Gu The Bristol-Myers Squibb Company Gufeng Wang Georgia State University Article Keywords: Dynamin, clathrin-mediated endocytosis, scission, vesicle ssion Posted Date: February 5th, 2021 DOI: https://doi.org/10.21203/rs.3.rs-134570/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 1/25 Abstract Dynamin plays an important role in clathrin-mediated endocytosis by cutting the neck of nascent vesicles from the cell membrane. Gold nanorods were used as imaging probes to observe dynamin action on cargo vesicles during live endocytosis events. Invariant is that at the peak of dynamin accumulation, the cargo-containing vesicle always gives abrupt, right-handed rotations that nishes in a short time (~ 0.28 s). The large and quick twist, herein named the super twist, is the result of the coordinated dynamin helix action upon GTP hydrolysis. After the super twist, the rotational freedom of the vesicle drastically increases, accompanied with simultaneous or delayed translational movement, indicating that it detaches from the cell membrane. These observations suggest that dynamin-mediated scission at the nal stage involves a large torque generated by coordinated actions of multiple dynamins in the helix, which is the main driving force for scission. -
Sorting Nexin-27 Regulates AMPA Receptor Trafficking Through The
RESEARCH ARTICLE Sorting nexin-27 regulates AMPA receptor trafficking through the synaptic adhesion protein LRFN2 Kirsty J McMillan1†*, Paul J Banks2†, Francesca LN Hellel1, Ruth E Carmichael1, Thomas Clairfeuille3, Ashley J Evans1, Kate J Heesom4, Philip Lewis4, Brett M Collins3, Zafar I Bashir2, Jeremy M Henley1, Kevin A Wilkinson1*, Peter J Cullen1* 1School of Biochemistry, University of Bristol, Bristol, United Kingdom; 2School of Physiology, Pharmacology and Neuroscience, University of Bristol, Bristol, United Kingdom; 3Institute for Molecular Bioscience, The University of Queensland, Queensland, Australia; 4Proteomics facility, School of Biochemistry, University of Bristol, Bristol, United Kingdom Abstract The endosome-associated cargo adaptor sorting nexin-27 (SNX27) is linked to various neuropathologies through sorting of integral proteins to the synaptic surface, most notably AMPA receptors. To provide a broader view of SNX27-associated pathologies, we performed proteomics in rat primary neurons to identify SNX27-dependent cargoes, and identified proteins linked to excitotoxicity, epilepsy, intellectual disabilities, and working memory deficits. Focusing on the *For correspondence: synaptic adhesion molecule LRFN2, we established that SNX27 binds to LRFN2 and regulates its [email protected] endosomal sorting. Furthermore, LRFN2 associates with AMPA receptors and knockdown of (KJMM); LRFN2 results in decreased surface AMPA receptor expression, reduced synaptic activity, and [email protected] attenuated hippocampal long-term potentiation. Overall, our study provides an additional (KAW); mechanism by which SNX27 can control AMPA receptor-mediated synaptic transmission and [email protected] (PJC) plasticity indirectly through the sorting of LRFN2 and offers molecular insight into the perturbed †These authors contributed function of SNX27 and LRFN2 in a range of neurological conditions. -
Membrane Remodeling in Clathrin-Mediated Endocytosis Volker Haucke1,2,* and Michael M
© 2018. Published by The Company of Biologists Ltd | Journal of Cell Science (2018) 131, jcs216812. doi:10.1242/jcs.216812 REVIEW Membrane remodeling in clathrin-mediated endocytosis Volker Haucke1,2,* and Michael M. Kozlov3,* ABSTRACT membrane fission and vesicle uncoating to eventually allow fusion Clathrin-mediated endocytosis is an essential cellular mechanism by of the nascent endocytic vesicle with endosomes (Box 1). which all eukaryotic cells regulate their plasma membrane composition In spite of important advances in the characterization of these to control processes ranging from cell signaling to adhesion, migration factors, key questions regarding the endocytic process remain. and morphogenesis. The formation of endocytic vesicles and For example, different models have been proposed regarding the tubules involves extensive protein-mediated remodeling of the initiation of clathrin-coated pit (CCP) formation and the onset of plasma membrane that is organized in space and time by protein– membrane curvature acquisition. Moreover, knowledge regarding protein and protein–phospholipid interactions. Recent studies the nanoscale distribution of endocytic proteins within the bilayer combining high-resolution imaging with genetic manipulations of plane during vesicle formation and the mechanisms that guide the endocytic machinery and with theoretical approaches have led their orchestrated assembly and disassembly is only now beginning to novel multifaceted phenomenological data of the temporal and to emerge. Finally, our understanding of the nature and dynamics spatial organization of the endocytic reaction. This gave rise to of membrane phospholipids (Box 2) and their associations with various – often conflicting – models as to how endocytic proteins endocytic proteins during endocytic membrane remodeling and their association with lipids regulate the endocytic protein remains limited. -
Cryo-Tomography of Coat Complexes ISSN 2059-7983
research papers Visualizing membrane trafficking through the electron microscope: cryo-tomography of coat complexes ISSN 2059-7983 Evgenia A. Markova and Giulia Zanetti* Institute of Structural and Molecular Biology, Birkbeck College, Malet Street, London WC1E 7HX, England. Received 8 March 2019 *Correspondence e-mail: [email protected] Accepted 12 April 2019 Coat proteins mediate vesicular transport between intracellular compartments, Keywords: cryo-electron tomography; which is essential for the distribution of molecules within the eukaryotic cell. three-dimensional reconstruction; coat proteins; The global arrangement of coat proteins on the membrane is key to their vesicular transport; COPII; subtomogram function, and cryo-electron tomography and subtomogram averaging have been averaging. used to study membrane-bound coat proteins, providing crucial structural insight. This review outlines a workflow for the structural elucidation of coat proteins, incorporating recent developments in the collection and processing of cryo-electron tomography data. Recent work on coat protein I, coat protein II and retromer performed on in vitro reconstitutions or in situ is summarized. These studies have answered long-standing questions regarding the mechanisms of membrane binding, polymerization and assembly regulation of coat proteins. 1. Introduction Recent advances in cryo-electron microscopy (cryo-EM) have enabled numerous high-resolution studies which have addressed long-standing structural biology questions. The large body of cryo-EM work carried out for protein structure characterization has utilized single-particle electron micro- scopy (Cheng, 2018). Recently, developments in hardware, data collection and data processing have placed cryo-electron tomography (cryo-ET) and subtomogram averaging (STA) at the forefront of structural studies of repetitive assemblies, reaching resolutions comparable to those of single-particle EM (Schur et al., 2016; Wan et al., 2017; Hutchings et al., 2018; Dodonova et al., 2017; Himes & Zhang, 2018). -
And Diagnostic Implications During Chronic Inflammation
Impaired SNX9 Expression in Immune Cells during Chronic Inflammation: Prognostic and Diagnostic Implications This information is current as Eliran Ish-Shalom, Yaron Meirow, Moshe Sade-Feldman, of September 27, 2021. Julia Kanterman, Lynn Wang, Olga Mizrahi, Yair Klieger and Michal Baniyash J Immunol 2016; 196:156-167; Prepublished online 25 November 2015; doi: 10.4049/jimmunol.1402877 Downloaded from http://www.jimmunol.org/content/196/1/156 Supplementary http://www.jimmunol.org/content/suppl/2015/11/25/jimmunol.140287 Material 7.DCSupplemental http://www.jimmunol.org/ References This article cites 50 articles, 23 of which you can access for free at: http://www.jimmunol.org/content/196/1/156.full#ref-list-1 Why The JI? Submit online. • Rapid Reviews! 30 days* from submission to initial decision by guest on September 27, 2021 • No Triage! Every submission reviewed by practicing scientists • Fast Publication! 4 weeks from acceptance to publication *average Subscription Information about subscribing to The Journal of Immunology is online at: http://jimmunol.org/subscription Permissions Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html Email Alerts Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts The Journal of Immunology is published twice each month by The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 Copyright © 2015 by The American Association of Immunologists, Inc. All rights reserved. Print ISSN: 0022-1767 Online ISSN: 1550-6606. The Journal of Immunology Impaired SNX9 Expression in Immune Cells during Chronic Inflammation: Prognostic and Diagnostic Implications Eliran Ish-Shalom,*,† Yaron Meirow,*,1 Moshe Sade-Feldman,*,1 Julia Kanterman,* Lynn Wang,* Olga Mizrahi,† Yair Klieger,*,† and Michal Baniyash* Chronic inflammation is associated with immunosuppression and downregulated expression of the TCR CD247. -
Silencing of SNX1 by Sirna Stimulates the Ligand-Induced Endocytosis of EGFR and Increases EGFR Phosphorylation in Gefitinib-Resistant Human Lung Cancer Cell Lines
1520 INTERNATIONAL JOURNAL OF ONCOLOGY 41: 1520-1530, 2012 Silencing of SNX1 by siRNA stimulates the ligand-induced endocytosis of EGFR and increases EGFR phosphorylation in gefitinib-resistant human lung cancer cell lines YUKIO NISHIMURA1, SOICHI TAKIGUCHI2, KIYOKO YOSHIOKA3, YUSAKU NAKABEPPU4 and KAZUYUKI ITOH3 1Division of Pharmaceutical Cell Biology, Graduate School of Pharmaceutical Sciences, Kyushu University, Fukuoka 812-8582; 2Institute for Clinical Research, National Kyushu Cancer Center, Fukuoka 811-1395; 3Department of Biology, Osaka Medical Center for Cancer and Cardiovascular Diseases, Osaka 537-8511; 4Division of Neurofunctional Genomics, Department of Immunobiology and Neuroscience, Medical Institute of Bioregulation, Kyushu University, Fukuoka 812-8582, Japan Received May 8, 2012; Accepted July 6, 2012 DOI: 10.3892/ijo.2012.1578 Abstract. Gefitinib is known to suppress the activation of delivery of pEGFR from early endosomes to late endosomes. EGFR signaling, which is required for cell survival and Further, western blot analysis revealed that silencing of SNX1 proliferation in non-small cell lung cancer (NSCLC) cell expression by siRNA in the gefitinib-resistant cells leads to lines. We previously demonstrated that the gefitinib-sensitive an accelerated degradation of EGFR along with a dramatic NSCLC cell line PC9 shows efficient ligand-induced endo- increase in the amounts of pEGFR after EGF stimulation. cytosis of phosphorylated EGFR (pEGFR). In contrast, the Based on these findings, we suggest that SNX1 is involved in gefitinib-resistant NSCLC cell lines QG56 and A549 showed the negative regulation of ligand-induced EGFR phosphory- internalized pEGFR accumulation in the aggregated early lation and mediates EGFR/pEGFR trafficking out of early endosomes, and this was associated with SNX1, a protein that endosomes for targeting to late endosomes/lysosomes via the interacts with and enhances the degradation of EGFR upon early/late endocytic pathway in human lung cancer cells. -
New Perspectives on SNARE Function in the Yeast Minimal Endomembrane System
G C A T T A C G G C A T genes Review New Perspectives on SNARE Function in the Yeast Minimal Endomembrane System James H. Grissom 1, Verónica A. Segarra 2 and Richard J. Chi 1,* 1 Department of Biological Sciences, University of North Carolina at Charlotte, Charlotte, NC 28223, USA; [email protected] 2 Department of Biology, High Point University, High Point, NC 27268, USA; [email protected] * Correspondence: [email protected] Received: 30 June 2020; Accepted: 2 August 2020; Published: 6 August 2020 Abstract: Saccharomyces cerevisiae is one of the best model organisms for the study of endocytic membrane trafficking. While studies in mammalian cells have characterized the temporal and morphological features of the endocytic pathway, studies in budding yeast have led the way in the analysis of the endosomal trafficking machinery components and their functions. Eukaryotic endomembrane systems were thought to be highly conserved from yeast to mammals, with the fusion of plasma membrane-derived vesicles to the early or recycling endosome being a common feature. Upon endosome maturation, cargos are then sorted for reuse or degraded via the endo-lysosomal (endo-vacuolar in yeast) pathway. However, recent studies have shown that budding yeast has a minimal endomembrane system that is fundamentally different from that of mammalian cells, with plasma membrane-derived vesicles fusing directly to a trans-Golgi compartment which acts as an early endosome. Thus, the Golgi, rather than the endosome, acts as the primary acceptor of endocytic vesicles, sorting cargo to pre-vacuolar endosomes for degradation. The field must now integrate these new findings into a broader understanding of the endomembrane system across eukaryotes. -
SNX1 Coats on Sorting Endosomes 1745 Immobilized on Glutathione-Agarose in 200 Μl Reactions
RESEARCH ARTICLE 1743 Self-assembly and binding of a sorting nexin to sorting endosomes Richard C. Kurten*, Anthony D. Eddington, Parag Chowdhury, Richard D. Smith, April D. Davidson and Brian B. Shank Department of Physiology and Biophysics and Arkansas Cancer Research Center, University of Arkansas for Medical Sciences, 4301 West Markham Street, Little Rock, Arkansas 72205-0750, USA *Author for correspondence (e-mail: [email protected]) Accepted 20 February 2001 Journal of Cell Science 114, 1743-1756 © The Company of Biologists Ltd SUMMARY The fate of endocytosed membrane proteins and luminal cytoplasmic and early/sorting endosome-bound pools of contents is determined by a materials processing system in green fluorescent protein-SNX1. Fluorescence resonance sorting endosomes. Endosomal retention is a mechanism energy transfer indicated that spectral variants of green that traps specific proteins within this compartment, and fluorescent protein-SNX1 were oligomeric in vivo. In cell thereby prevents their recycling. We report that a sorting extracts, these green fluorescent protein-SNX1 oligomers nexin SNX1, a candidate endosomal retention protein, self- corresponded to tetrameric and larger complexes of green assembles in vitro and in vivo, and has this property in fluorescent protein-SNX1. Using video microscopy, we common with its yeast homologue Vps5p. A comparison of observed small vesicle docking and tubule budding from SNX1 expressed in bacterial and in mammalian systems large green fluorescent protein-SNX1 coated endosomes, and analyzed by size-exclusion chromatography indicates which are features consistent with their role as sorting that in cytosol SNX1 tetramers are part of a larger complex endosomes. with additional proteins.