Occurrence of New Polyenoic Very Long Chain Acyl Residues in Lipids from Acanthamoeba Castellanii
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Metaproteogenomic Insights Beyond Bacterial Response to Naphthalene
ORIGINAL ARTICLE ISME Journal – Original article Metaproteogenomic insights beyond bacterial response to 5 naphthalene exposure and bio-stimulation María-Eugenia Guazzaroni, Florian-Alexander Herbst, Iván Lores, Javier Tamames, Ana Isabel Peláez, Nieves López-Cortés, María Alcaide, Mercedes V. del Pozo, José María Vieites, Martin von Bergen, José Luis R. Gallego, Rafael Bargiela, Arantxa López-López, Dietmar H. Pieper, Ramón Rosselló-Móra, Jesús Sánchez, Jana Seifert and Manuel Ferrer 10 Supporting Online Material includes Text (Supporting Materials and Methods) Tables S1 to S9 Figures S1 to S7 1 SUPPORTING TEXT Supporting Materials and Methods Soil characterisation Soil pH was measured in a suspension of soil and water (1:2.5) with a glass electrode, and 5 electrical conductivity was measured in the same extract (diluted 1:5). Primary soil characteristics were determined using standard techniques, such as dichromate oxidation (organic matter content), the Kjeldahl method (nitrogen content), the Olsen method (phosphorus content) and a Bernard calcimeter (carbonate content). The Bouyoucos Densimetry method was used to establish textural data. Exchangeable cations (Ca, Mg, K and 10 Na) extracted with 1 M NH 4Cl and exchangeable aluminium extracted with 1 M KCl were determined using atomic absorption/emission spectrophotometry with an AA200 PerkinElmer analyser. The effective cation exchange capacity (ECEC) was calculated as the sum of the values of the last two measurements (sum of the exchangeable cations and the exchangeable Al). Analyses were performed immediately after sampling. 15 Hydrocarbon analysis Extraction (5 g of sample N and Nbs) was performed with dichloromethane:acetone (1:1) using a Soxtherm extraction apparatus (Gerhardt GmbH & Co. -
The Risk to Human Health from Free-Living Amoebae Interaction with Legionella in Drinking and Recycled Water Systems
THE RISK TO HUMAN HEALTH FROM FREE-LIVING AMOEBAE INTERACTION WITH LEGIONELLA IN DRINKING AND RECYCLED WATER SYSTEMS Dissertation submitted by JACQUELINE MARIE THOMAS BACHELOR OF SCIENCE (HONOURS) AND BACHELOR OF ARTS, UNSW In partial fulfillment of the requirements for the award of DOCTOR OF PHILOSOPHY in ENVIRONMENTAL ENGINEERING SCHOOL OF CIVIL AND ENVIRONMENTAL ENGINEERING FACULTY OF ENGINEERING MAY 2012 SUPERVISORS Professor Nicholas Ashbolt Office of Research and Development United States Environmental Protection Agency Cincinnati, Ohio USA and School of Civil and Environmental Engineering Faculty of Engineering The University of New South Wales Sydney, Australia Professor Richard Stuetz School of Civil and Environmental Engineering Faculty of Engineering The University of New South Wales Sydney, Australia Doctor Torsten Thomas School of Biotechnology and Biomolecular Sciences Faculty of Science The University of New South Wales Sydney, Australia ORIGINALITY STATEMENT '1 hereby declare that this submission is my own work and to the best of my knowledge it contains no materials previously published or written by another person, or substantial proportions of material which have been accepted for the award of any other degree or diploma at UNSW or any other educational institution, except where due acknowledgement is made in the thesis. Any contribution made to the research by others, with whom 1 have worked at UNSW or elsewhere, is explicitly acknowledged in the thesis. I also declare that the intellectual content of this thesis is the product of my own work, except to the extent that assistance from others in the project's design and conception or in style, presentation and linguistic expression is acknowledged.' Signed ~ ............................ -
Genetic and Functional Studies of the Mip Protein of Legionella
t1.ì. Genetic and Functional Studies of the Mip Protein of Legionella Rodney Mark Ratcliff, BSc (Hons)' MASM Infectious Diseases Laboratories Institute of Medical and Veterinary Science and Department of Microbiology and Immunology UniversitY of Adelaide. Adelaide, South Australia A thesis submitted to the University of Adelaide for the degree of I)octor of Philosophy 15'h March 2000 amended 14th June 2000 Colonies of several Legionella strains on charcoal yeast extract agar (CYE) after 4 days incubation at 37"C in air. Various magnifications show typical ground-glass opalescent appearance. Some pure strains exhibit pleomorphic growth or colour. The top two photographs demonstrate typical red (LH) and blue-white (RH) fluorescence exhibited by some species when illuminated by a Woods (IJV) Lamp. * t Table of Contents .1 Chapter One: Introduction .1 Background .............'. .2 Morphology and TaxonomY J Legionellosis ............. 5 Mode of transmission "..'....'. 7 Environmental habitat 8 Interactions between Legionella and phagocytic hosts 9 Attachment 11 Engulfment and internalisation.'.. 13 Intracellular processing 13 Intracellular replication of legionellae .. " "' " "' 15 Host cell death and bacterial release 18 Virulence (the Genetic factors involved with intracellular multiplication and host cell killing .20 icm/dot system) Legiolysin .25 Msp (Znn* metaloprotease) ...'..... .25 .28 Lipopolysaccharide .29 The association of flagella with disease.. .30 Type IV fimbriae.... .31 Major outer membrane proteins....'.......'. JJ Heat shock proteins'.'. .34 Macrophage infectivity potentiator (Mip) protein Virulenceiraits of Legionella species other than L. pneumophila..........' .39 phylogeny .41 Chapter One (continued): Introduction to bacterial classification and .41 Identificati on of Legionella...'.,..'.. .46 Phylogeny .52 Methods of phylogenetic analysis' .53 Parsimony methods.'.. .55 Distance methods UPGMA cluster analYsis.'.'... -
The Role of Lipids in Legionella-Host Interaction
International Journal of Molecular Sciences Review The Role of Lipids in Legionella-Host Interaction Bozena Kowalczyk, Elzbieta Chmiel and Marta Palusinska-Szysz * Department of Genetics and Microbiology, Institute of Biological Sciences, Faculty of Biology and Biotechnology, Maria Curie-Sklodowska University, Akademicka St. 19, 20-033 Lublin, Poland; [email protected] (B.K.); [email protected] (E.C.) * Correspondence: [email protected] Abstract: Legionella are Gram-stain-negative rods associated with water environments: either nat- ural or man-made systems. The inhalation of aerosols containing Legionella bacteria leads to the development of a severe pneumonia termed Legionnaires’ disease. To establish an infection, these bacteria adapt to growth in the hostile environment of the host through the unusual structures of macromolecules that build the cell surface. The outer membrane of the cell envelope is a lipid bilayer with an asymmetric composition mostly of phospholipids in the inner leaflet and lipopolysaccha- rides (LPS) in the outer leaflet. The major membrane-forming phospholipid of Legionella spp. is phosphatidylcholine (PC)—a typical eukaryotic glycerophospholipid. PC synthesis in Legionella cells occurs via two independent pathways: the N-methylation (Pmt) pathway and the Pcs pathway. The utilisation of exogenous choline by Legionella spp. leads to changes in the composition of lipids and proteins, which influences the physicochemical properties of the cell surface. This phenotypic plastic- ity of the Legionella cell envelope determines the mode of interaction with the macrophages, which results in a decrease in the production of proinflammatory cytokines and modulates the interaction with antimicrobial peptides and proteins. The surface-exposed O-chain of Legionella pneumophila sg1 LPS consisting of a homopolymer of 5-acetamidino-7-acetamido-8-O-acetyl-3,5,7,9-tetradeoxy-L- glycero-D-galacto-non-2-ulosonic acid is probably the first component in contact with the host cell that anchors the bacteria in the host membrane. -
CGM-18-001 Perseus Report Update Bacterial Taxonomy Final Errata
report Update of the bacterial taxonomy in the classification lists of COGEM July 2018 COGEM Report CGM 2018-04 Patrick L.J. RÜDELSHEIM & Pascale VAN ROOIJ PERSEUS BVBA Ordering information COGEM report No CGM 2018-04 E-mail: [email protected] Phone: +31-30-274 2777 Postal address: Netherlands Commission on Genetic Modification (COGEM), P.O. Box 578, 3720 AN Bilthoven, The Netherlands Internet Download as pdf-file: http://www.cogem.net → publications → research reports When ordering this report (free of charge), please mention title and number. Advisory Committee The authors gratefully acknowledge the members of the Advisory Committee for the valuable discussions and patience. Chair: Prof. dr. J.P.M. van Putten (Chair of the Medical Veterinary subcommittee of COGEM, Utrecht University) Members: Prof. dr. J.E. Degener (Member of the Medical Veterinary subcommittee of COGEM, University Medical Centre Groningen) Prof. dr. ir. J.D. van Elsas (Member of the Agriculture subcommittee of COGEM, University of Groningen) Dr. Lisette van der Knaap (COGEM-secretariat) Astrid Schulting (COGEM-secretariat) Disclaimer This report was commissioned by COGEM. The contents of this publication are the sole responsibility of the authors and may in no way be taken to represent the views of COGEM. Dit rapport is samengesteld in opdracht van de COGEM. De meningen die in het rapport worden weergegeven, zijn die van de auteurs en weerspiegelen niet noodzakelijkerwijs de mening van de COGEM. 2 | 24 Foreword COGEM advises the Dutch government on classifications of bacteria, and publishes listings of pathogenic and non-pathogenic bacteria that are updated regularly. These lists of bacteria originate from 2011, when COGEM petitioned a research project to evaluate the classifications of bacteria in the former GMO regulation and to supplement this list with bacteria that have been classified by other governmental organizations. -
Patent ( 10 ) Patent No
US010363308B2 (12 ) United States Patent ( 10 ) Patent No. : US 10 , 363, 308 B2 Clube et al. ( 45 ) Date of Patent: * Jul. 30 , 2019 ( 54 ) SELECTIVELY ALTERING MICROBIOTA (58 ) Field of Classification Search FOR IMMUNE MODULATION CPC . .. A61K 39 /3955 ; A61K 39 /0011 ; A61K 31/ 7105 ; A61K 2039 /505 ; A61P 37 /00 ; A61P 35 /00 ; A61N 1 /360002 (71 ) Applicant: SNIPR Technologies Limited , London See application file for complete search history . (GB ) ( 56 ) References Cited (72 ) Inventors : Jasper Clube , London (GB ); Morten U . S . PATENT DOCUMENTS Sommer , Copenhagen Ø ( DK ) ; 4 ,626 , 504 A 12 / 1986 Puhler et al. Christian Grøndahl, Copenhagen Ø 5 ,633 , 154 A 5 / 1997 Schaefer et al. 8 , 241, 498 B2 8 / 2012 Summer et al . ( DK ) 8 , 252 , 576 B2 8 / 2012 Campbell et al. 8 , 906 ,682 B2 12 /2014 June et al. ( 73 ) Assignee : SNIPR Technologies Limited , London 8 , 911 , 993 B2 12 / 2014 June et al . 8 ,916 ,381 B1 12 /2014 June et al . (GB ) 8 ,975 ,071 B1 3 /2015 June et al . 9 , 101, 584 B2 8 / 2015 June et al . 9 , 102 ,760 B2 8 / 2015 June et al . ( * ) Notice : Subject to any disclaimer, the term of this 9 , 102 ,761 B2 8 / 2015 June et al. patent is extended or adjusted under 35 9 , 113 ,616 B2 8 / 2015 MacDonald et al. U . S . C . 154 ( b ) by 0 days. 9 , 328 , 156 B2 5 / 2016 June et al . 9 ,464 , 140 B2 10 /2016 June et al . 9 ,481 , 728 B2 11/ 2016 June et al. -
ESCMID Online Lecture Library © by Author ESCMID Online Lecture Library Latex Agglutination Test
The etiological agent: Legionella pneumophila and other Legionella spp. Valeria Gaia © by author National Reference Centre for Legionella ESCMIDc/o Online Microbiology Lecture laboratory Library Ente Ospedaliero Cantonale Bellinzona - Switzerland © by author ESCMID Online Lecture Library Hystory of Legionnaires’ Disease July 21st 1976 - Philadelphia • 58th Convention of the American Legion at the Bellevue-Stratford Hotel • > 4000 World War II Veterans with families & friends • 600 persons staying at the hotel © by author • ESCMIDJuly 23nd: convention Online closed Lecture Library • Several veterans showed symptoms of pneumonia Searching for the causative agent David Fraser: CDC – Atlanta •Influenza virus? •Nickel intoxication? •Toxin? o 2603 toxicology tests o 5120 microscopy exams o 990 serological tests© by author ESCMIDEverybody seems Online to agree: Lecture it’s NOT a bacterialLibrary disease! July 22nd – August 2nd •High fever •Coughing •Breathing difficulties •Chest pains •Exposed Population =© people by authorstaying in the lobby or outside the Bellevue Stratford Hotel «Broad Street Pneumonia» •221ESCMID persons were Online infected (182+39 Lecture «Broad StreetLibrary Pneumonia» ) 34 patients died (29+5) September 1976-January 1977 Joseph McDade: aims to rule out Q-fever (Rickettsiae) •Injection of “infected” pulmonary tissue in Guinea Pigs microscopy: Cocci and small Bacilli not significant at the time •Inoculation in embryonated eggs + antibiotics to inhibit the growth of contaminating bacteria No growth Microscopy on the -
Methods Development for Unregulated Contaminants in Drinking Water
Method Development for Unregulated Contaminants in Drinking Water: Public Meeting and Webinar Held June 6, 2018 USEPA, Office of Ground Water and Drinking Water Office of Water (MLK 140) EPA 815-A-18-001 June 2018 Methods Development for Unregulated Contaminants in Drinking Water Methods Development for Unregulated Contaminants in Drinking Water Public Meeting and Webinar June 6, 2018 9:00 a.m. ‐ 3:00 p.m. ET U.S. EPA Office of Water and Office of Research and Development Welcome & SDWA Regulatory Process Brenda Parris, U.S. EPA Office of Ground Water and Drinking Water Technical Support Center Page 1 of 103 Methods Development for Unregulated Contaminants in Drinking Water Participating by Webinar • Listen‐only mode Figure 1 • Click on “+” next to “Questions” in the control panel (Figure 1) to submit questions/comments Figure 2 • Type a question in the box; click send (Figure 2) • Submit questions as soon as possible • Questions will be answered at the end of the presentations June 2018 U.S. Environmental Protection Agency Slide 3 of 206 Agenda 8:30‐9:00 Stakeholder Sign‐In Welcome & SDWA Regulatory Process Overview of Method Development EPA Method 542 EPA Methods 524.2/524.3/524.4 and 525.3 EPA Method 556.1 ~10:15‐10:30 Break EPA Method 540 & 543 EPA Methods 537 & 538 Method in Development: PFAS Method in Development 558: Ethyl carbamate (Urethane) and N‐Methyl‐2‐pyrrolidone Method in Development: Nonylphenols ~11:45‐12:45 Lunch Method in Development: Legionella Method in Development: Mycobacterium ~1:45‐2:00 Break 2:00‐3:00 Open Forum and Discussion Closing Remarks Page 2 of 103 Methods Development for Unregulated Contaminants in Drinking Water Overview • Regulatory background for UCMR • Safe Drinking Water Act (SDWA) authority • Relationships to: • Contaminant Candidate List (CCL) • Unregulated Contaminant Monitoring Rule (UCMR) • Regulatory Determination • Six‐Year Review June 2018 U.S. -
Assessment of the Microbiota in Microdissected Tissues of Crohn's
Hindawi Publishing Corporation International Journal of Inflammation Volume 2012, Article ID 505674, 11 pages doi:10.1155/2012/505674 Research Article Assessment of the Microbiota in Microdissected Tissues of Crohn’s Disease Patients Gert De Hertogh,1 Bart Lemmens,1 Peter Verhasselt,2 Ronald de Hoogt,2 Xavier Sagaert,1 Marie Joossens,3 Gert Van Assche,3 Paul Rutgeerts,3 Severine Vermeire,3 and Jeroen Aerssens2 1 Department of Morphology and Molecular Pathology, University Hospitals KULeuven, Minderbroedersstraat 12, 3000 Leuven, Belgium 2 Department Research Informatics & Integrated Genomics, Janssen Pharmaceutical Companies of Johnson & Johnson, Turnhoutseweg 30, 2340 Beerse, Belgium 3 Department of Gastroenterology, University Hospitals KULeuven, Herestraat 49, 3000 Leuven, Belgium Correspondence should be addressed to Gert De Hertogh, [email protected] Received 18 July 2011; Revised 5 September 2011; Accepted 14 September 2011 Academic Editor: Derek Jewell Copyright © 2012 Gert De Hertogh et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The microbiota of the gastrointestinal tract is frequently mentioned as one of the key players in the etiopathogenesis of Crohn’s disease (CD). Four hypotheses have been suggested: the single, still unknown bacterial pathogen, an abnormal overall composition of the bowel microbiota (“dysbiosis”), an abnormal immunological reaction to an essentially normally composed microbiota, and increased bacterial translocation. We propose that laser capture microdissection of selected microscopic structures, followed by broad-range 16S rRNA gene sequencing, is an excellent method to assess spatiotemporal alterations in the composition of the bowel microbiota in CD. -
Microbial Diversity in Oiled and Un-Oiled Shoreline Sediments in the Norwegian Arctic
Bioremediation Microbial diversity in oiled and un-oiled shoreline sediments in the Norwegian Arctic M. Grossman1, R. Prince1, R. Garrett1, K. Garrett1, R. Bare1, K. Lee2, G. Sergy3, E. Owens4, C. Guénette5 1 Exxon Research and Engineering Co., Annandale, USA 2 Fisheries and Oceans Maurice Lamontagne Inst, Mont Joli, Quebec, Canada 3 Environment Canada, Edmonton, Canada 4 Owens Coastal Consultants, Bainbridge Island, USA 5 SINTEF, Trondheim, Norway ABSTRACT Field trails were performed in the summer of 1997 on the island of Spitzbergen (approximately 78°N, 17’E). Approximately 5 L m-2 of an IF-30 intermediate fuel grade oil was applied to 140 meters of shoreline. The oiled shoreline was divided into four plots with one plot left untreated, and two plots tilled to a depth of approximately 20 cm. Four applications of fertilizer were applied over a two-month period to one of the tilled plots, and also to an untilled plot. The effect of bioremediation on the microbial community was evaluated using phospholipid fatty acid analysis, hydrocarbon degradation gene probes, and 16S rDNA gene based phylogenetic analysis. Clear differences were observed between fertilized and un-fertilized beaches indicating that bioremediation stimulated the hydrocarbon degrading community in an Arctic environment. Introduction Bioremediation has proven to be an environmentally acceptable and cost-effective treatment of oiled shorelines in temperate climates [16, 20, 4, 13, 27, 18], and there is good reason to believe that similar results can be expected in the Arctic [23, 25, 26]. Hydrocarbons are generally quite biodegradable and oil-degrading microbes are ubiquitous [17], but oil biodegradation is limited in most marine environments by sub-optimal levels of nutrients such as biologically available nitrogen and phosphorus. -
Plasticité Fonctionnelle Et Structurale Chez Legionella Pneumophila
Plasticité fonctionnelle et structurale chez Legionella pneumophila - Impact des protéines de type histone sur la virulence et génotypage par les séquences d’insertion Mike Vergnes To cite this version: Mike Vergnes. Plasticité fonctionnelle et structurale chez Legionella pneumophila - Impact des pro- téines de type histone sur la virulence et génotypage par les séquences d’insertion. Bactériologie. Université Joseph-Fourier - Grenoble I, 2010. Français. tel-00670047 HAL Id: tel-00670047 https://tel.archives-ouvertes.fr/tel-00670047 Submitted on 14 Feb 2012 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. UNIVERSITE JOSEPH FOURIER – GRENOBLE I THESE Pour obtenir le grade de DOCTEUR DE L’UNIVERSITE JOSEPH FOURIER Discipline : Virologie, Microbiologie, Immunologie VERGES Mike Plasticité fonctionnelle et structurale chez Legionella pneumophila _____ Impact des protéines de type histone sur la virulence et génotypage par les séquences d’insertion Jury Mr Bertrand TOUSSAIT Président Mme Sophie JARRAUD Rapporteur Mr Yann HECHARD Rapporteur Mme Sophie COURTOIS Examinateur Mr Dominique SCHEIDER Directeur de thèse Mme Elisabeth KAY Co-directeur de thèse Soutenue le 13 décembre 2010 Thèse préparée au sein du Laboratoire Adaptation et Pathogénie des Microorganismes UMR5163 CNRS / Université Joseph Fourier Institut Jean Roget Sommaire Chapitre 1 : Synthèse bibliographique.................................................................................. -
Legionella and Stagnation in Water Services – Awareness of Problems, Especially in a Post Covid World Presenter- Niall Phillips
South Cumbria Occupational Health & Safety Group Preventing Legionella and stagnation in water services – awareness of problems, especially in a post Covid world Presenter- Niall Phillips • Chemistry at Manchester Polytechnic • Technical Manager at Hydraclean Ltd • Worked for ABK Technical services, which then became Rentokill W&V as Laboratory Manager, looking at biocidal efficacy among other things. • Hydraclean for 29 Years. • Experienced Legionella control across Chemical, Nuclear, Manufacturing, Housing, Education, Government and Property Portfolios etc. etc. WHAT IS LEGIONELLOSIS (1.) Legionellosis Covers:- (5.) The first identified outbreak of • Legionnaires Disease (Legionella Legionnaires Disease was amongst Pneumophila (or L. Longbeachae in people who attended the Pennsylvania composts)) State convention of the American • Pontiac Fever Legion in 1976 - An “apparently” new bacterium was isolated from living • Lochgoilhead Fever (L.micdadei) specimens. (234 ill: 34 dead) (2.) It Is A Bacterium - Not A Virus (6.) Legionella is ubiquitous i.e... it is widely found in natural (3.) Legionella Pneumophila has various and man made systems. forms known as serogroups. Serogroup 1 is known to be the most virulent form. (7.) Over 58 species have been identified of which over 20 associated with disease in humans (4.) Legionella Pneumophila is known to be the species most commonly responsible for infection in humans. Species of Legionella • Legionella adelaidensis • Legionella longbeachae • Legionella anisa • Legionella lytica • Legionella