Vi Iberian Congress of Murcia 2016 Ichthyology
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Dedication Donald Perrin De Sylva
Dedication The Proceedings of the First International Symposium on Mangroves as Fish Habitat are dedicated to the memory of University of Miami Professors Samuel C. Snedaker and Donald Perrin de Sylva. Samuel C. Snedaker Donald Perrin de Sylva (1938–2005) (1929–2004) Professor Samuel Curry Snedaker Our longtime collaborator and dear passed away on March 21, 2005 in friend, University of Miami Professor Yakima, Washington, after an eminent Donald P. de Sylva, passed away in career on the faculty of the University Brooksville, Florida on January 28, of Florida and the University of Miami. 2004. Over the course of his diverse A world authority on mangrove eco- and productive career, he worked systems, he authored numerous books closely with mangrove expert and and publications on topics as diverse colleague Professor Samuel Snedaker as tropical ecology, global climate on relationships between mangrove change, and wetlands and fish communities. Don pollutants made major scientific contributions in marine to this area of research close to home organisms in south and sedi- Florida ments. One and as far of his most afield as enduring Southeast contributions Asia. He to marine sci- was the ences was the world’s publication leading authority on one of the most in 1974 of ecologically important inhabitants of “The ecology coastal mangrove habitats—the great of mangroves” (coauthored with Ariel barracuda. His 1963 book Systematics Lugo), a paper that set the high stan- and Life History of the Great Barracuda dard by which contemporary mangrove continues to be an essential reference ecology continues to be measured. for those interested in the taxonomy, Sam’s studies laid the scientific bases biology, and ecology of this species. -
Downloaded on 2019-01-07T05:41:17Z Fmicb-09-00873 May 4, 2018 Time: 12:22 # 1
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Cork Open Research Archive Title The gut microbiota of marine fish Author(s) Egerton, Sian; Culloty, Sarah; Whooley, Jason; Stanton, Catherine; Ross, R. Paul Original citation Egerton, S., Culloty, S., Whooley, J., Stanton, C. and Ross, R. P. (2018) 'The gut microbiota of marine fish', Frontiers in Microbiology, 9, 873 (17pp). doi: 10.3389/fmicb.2018.00873 Type of publication Article (peer-reviewed) Link to publisher's https://www.frontiersin.org/articles/10.3389/fmicb.2018.00873/full version http://dx.doi.org/10.3389/fmicb.2018.00873 Access to the full text of the published version may require a subscription. Rights © 2018, Egerton, Culloty, Whooley, Stanton and Ross. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. https://creativecommons.org/licenses/by/4.0/ Item downloaded http://hdl.handle.net/10468/6222 from Downloaded on 2019-01-07T05:41:17Z fmicb-09-00873 May 4, 2018 Time: 12:22 # 1 REVIEW published: 04 May 2018 doi: 10.3389/fmicb.2018.00873 The Gut Microbiota of Marine Fish Sian Egerton1,2, Sarah Culloty2,3, Jason Whooley4, Catherine Stanton5,6 and R. Paul Ross1,5,6* 1 School of Microbiology, University College Cork, Cork, Ireland, 2 School of Biological, Earth and Environmental Sciences, University College Cork, Cork, Ireland, 3 Environmental Research Institute, University College Cork, Cork, Ireland, 4 Bio-marine Ingredients Ireland Ltd., Killybegs, Ireland, 5 Teagasc Research Centre, Fermoy, Ireland, 6 APC Microbiome Ireland, Teagasc and University College Cork, Cork, Ireland The body of work relating to the gut microbiota of fish is dwarfed by that on humans and mammals. -
Bivalves Nas Lagoas Costeiras Da Barrinha De Mira, Lagoa De Mira, Lagoa Da Vela E Lagoa Das Braças
Caracterização e proteção das espécies nativas de bivalves nas lagoas costeiras da Barrinha de Mira, Lagoa de Mira, Lagoa da Vela e Lagoa das Braças FICHA TÉCNICA título PAELORIS: Guia de Flora e Fauna aquáticas das Lagoas Costeiras do Sítio Rede Natura 2000: Dunas de Mira, Gândara e Gafanhas (código PTCON0055) autores Simone Varandas; Tiago Assunção; Paulo Almeida; Rui Cortes; António Crespí; Pedro Ferreira; Elsa Froufe; Mariana Hinzmann; Joaquim Jesus; Manuel Lopes-Lima; Marisa Lopes; Marco Magalhães; Vítor Pereira; Cátia Santos; Ronaldo Sousa; Amílcar Tei- xeira edição Instituto Politécnico de Bragança Universidade de Trás-os-Montes e Alto Douro Universidade do Minho Universidade do Porto Câmara Municipal da Figueira da Foz Câmara Municipal de Mira fotografias Adriana Terrível, Amílcar Teixeira, Ana Gonçalves, António Crespí, Carlos Antunes, João Carrola, Luís Quinta, Manuel Lopes-Lima, Nuno Rico, Ronaldo Sousa, Rui Cortes, Simone Varandas, Tiago Assunção ilustrações/esquemas Joana Rodrigues | Emanuel Peres conceção e design gráfico Tiago Assunção | Vítor Pereira design gráfico da capa Marco Custódio e contracapa impressão Nome da empresa tiragem 1000 exemplares d. l. 352…/14 isbn 978-972-745-172-2 citação da obra varandas s., assunção t., almeida p., cortes r., crespí a., ferreira p., froufe e., hinzmann m., jesus j., lopes- lima m., lopes m., magalhães m., pereira v., santos c., sousa r., teixeira a. 2014. PAELORIS: Guia de Flora e Fauna aquáticas das Lagoas Costeiras do Sítio Rede Natura 2000: Dunas de Mira, Gândara e Gafanhas (código -
High-Resolution Acoustic Cameras Provide Direct and Efficient
applied sciences Article High-Resolution Acoustic Cameras Provide Direct and Efficient Assessments of Large Demersal Fish Populations in Extremely Turbid Waters Céline Artero 1,2,* , Simon Marchetti 3, Eric Bauer 3, Christophe Viala 4, Claire Noël 3, Christopher C. Koenig 2, Rachel Berzins 1 and Luis Lampert 5 1 Office Français de la Biodiversité (ex Office National de la Chasse et de la Faune Sauvage), 97338 Cayenne CEDEX, French Guiana; [email protected] 2 Coastal and Marine Laboratory, Florida State University, St Teresa Beach, FL 32358, USA; [email protected] 3 SEMANTIC T.S., 83110 Sanary-sur-Mer, France; [email protected] (S.M.); [email protected] (E.B.); [email protected] (C.N.) 4 Seaviews, 13600 La Ciotat, France; [email protected] 5 Institut Français de Recherche Pour l’Exploitation de la MER, Dyneco/Pelagos, 29280 Plouzané, France; [email protected] * Correspondence: [email protected]; Tel.: +33-(0)-676038745 Abstract: Monitoring fish species populations in very turbid environments is challenging. Acoustic cameras allow work in very poor visibility but are often deployed as a fixed observation point, limiting the scope of the survey. A BlueView P900-130 acoustic camera was deployed in rocky marine habitats off the coast of French Guiana in order to assess the total abundance, size structure and spatial Citation: Artero, C.; Marchetti, S.; distribution of a demersal fish population. The relevancy of using an acoustic camera to achieve these Bauer, E.; Viala, C.; Noël, C.; Koenig, three objectives was evaluated by comparing acoustic data to those obtained from fishing surveys. -
Universidad De Murcia
UNIVERSIDAD DE MURCIA ESCUELA INTERNACIONAL DE DOCTORADO Biological Response of Invasive Fish in a Highly Regulated Mediterranean River Basin Respuesta Biológica de Peces Invasores en una Cuenca Mediterránea Altamente Regulada Dña. Fátima Amat Trigo 2018 UNIVERSIDAD DE MURCIA Facultad de Biología Departamento de Zoología y Antropología Física Biological response of invasive fish in a highly regulated Mediterranean river basin Respuesta biológica de peces invasores en una cuenca mediterránea altamente regulada Memoria presentada para optar al grado de Doctor en Biología por la licenciada FÁTIMA AMAT TRIGO Directores: Dr. Francisco José Oliva Paterna Dra. Mar Torralva Forero Index Agradecimientos iii Structure of the doctoral thesis report v Resumen vii Chapter 1 1 General introduction and objectives References 4 Chapter 2 9 Approximation to study area and target species Study area 9 Flow characterisation Exotic target species 13 Gobio lozanoi Doadrio & Madeira, 2004 Lepomis gibbosus (Linnaeus, 1758) Alburnus alburnus (Linnaeus, 1758) References 19 Chapter 3 29 Colonization and plasticity in population traits of the Alburnus alburnus along a longitudinal river gradient in a Mediterranean river basin Introduction and objectives 29 Material and methods 32 Results 37 Discussion 45 Conclusions 49 References 50 Chapter 4 55 Assessing effects of flow regulation on size-related variables on of freshwater fish in a Mediterranean basin Introduction and objectives 55 Material and methods 58 Results 64 Discussion 73 Conclusions 79 References 81 i -
Perciformes: Haemulidae) Inferred Using Mitochondrial and Nuclear Genes
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/256288239 A molecular phylogeny of the Grunts (Perciformes: Haemulidae) inferred using mitochondrial and nuclear genes Article in Zootaxa · June 2011 DOI: 10.11646/zootaxa.2966.1.4 CITATIONS READS 35 633 3 authors, including: Millicent D Sanciangco Luiz A Rocha Old Dominion University California Academy of Sciences 26 PUBLICATIONS 1,370 CITATIONS 312 PUBLICATIONS 8,691 CITATIONS SEE PROFILE SEE PROFILE Some of the authors of this publication are also working on these related projects: Mesophotic Coral Reefs View project Vitória-Trindade Chain View project All content following this page was uploaded by Luiz A Rocha on 20 May 2014. The user has requested enhancement of the downloaded file. Zootaxa 2966: 37–50 (2011) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2011 · Magnolia Press ISSN 1175-5334 (online edition) A molecular phylogeny of the Grunts (Perciformes: Haemulidae) inferred using mitochondrial and nuclear genes MILLICENT D. SANCIANGCO1, LUIZ A. ROCHA2 & KENT E. CARPENTER1 1Department of Biological Sciences, Old Dominion University, Mills Godwin Building, Norfolk, VA 23529 USA. E-mail: [email protected], [email protected] 2Marine Science Institute, University of Texas at Austin, 750 Channel View Dr., Port Aransas, TX 78373, USA. E-mail: [email protected] Abstract We infer a phylogeny of haemulid genera using mitochondrial COI and Cyt b genes and nuclear RAG1, SH3PX3, and Plagl2 genes from 56 haemulid species representing 18 genera of the expanded haemulids (including the former inermiids) and ten outgroup species. Results from maximum parsimony, maximum likelihood, and Bayesian analyses show strong support for a monophyletic Haemulidae with the inclusion of Emmelichthyops atlanticus. -
39 DIETA ALIMENTAR DE Genyatremus Luteus
DIETA ALIMENTAR DE Genyatremus luteus. DIETA ALIMENTAR DE Genyatremus luteus (BLOCH, 1790) - (TELEOSTEI, PERCIFORMES: HAEMULIDAE) NA BAÍA DE SÃO JOSÉ, MARANHÃO, BRASIL ZAFIRA DA SILVA DE ALMEIDA 1, JORGE LUIZ SILVA NUNES 2 & MARIA DAS GRAÇAS FERREIRA SANTIAGO ALVES. 1 UEMA – Depto. de Química e Biologia, Centro de Ciências Exatas e Naturais, Cidade Universitária Paulo VI, CEP 65.000-000, São Luís, Maranhão – Brasil. e-mail: [email protected]. 2 Programa de Pós-Graduação em Oceanografia, Depto. de Oceanografia da UFPE, Av. da Arquitetura, s/n, Cid. Universitária, CEP 50740-550, Recife, Pernambuco - Brasil. E-mail: [email protected]. 3 Bacharel em Ciências Biológicas. RESUMO Neste trabalho foi estudado a dieta de Genyatremus luteus , aumentando o conhecimento disponível para compreensão da teia trófica em águas costeiras do município de São José de Ribamar – Maranhão. Os indivíduos foram capturados entre os meses de abril e setembro de 1999, utilizando como arte de pesca a linha de mão, lançada a partir de uma biana a motor, embarcação comumente usada pelos pescadores locais. Em laboratório foram realizadas análises quali-quantitativas dos itens alimentares relacionando-os com as estações de coleta e com a fase lunar. Os resultados obtidos demonstraram que a maioria dos tubos digestivos encontrava-se “totalmente cheio” não havendo diferenças estatísticas significativas com relação às estações de coleta e as fases da lua. Os grupos de itens mais freqüentes neste estudo foram Algas (39,2%), Crustacea (21,8%), Bivalvia (15,2%) e Echinodermata (8,0%). Os Crustacea identificados foram: Decapoda, Isopoda, Tanaidacea e Amphipoda, além de quelípodos, télson e carapaça. -
A Continental-Scale Analysis of Fish Assemblage Functional Structure in European Rivers Maxime Logez, Pierre Bady, Andreas Melcher, Didier Pont
A continental-scale analysis of fish assemblage functional structure in European rivers Maxime Logez, Pierre Bady, Andreas Melcher, Didier Pont To cite this version: Maxime Logez, Pierre Bady, Andreas Melcher, Didier Pont. A continental-scale analysis of fish assemblage functional structure in European rivers. Ecography, Wiley, 2013, 36 (1), pp.80-91. 10.1111/j.1600-0587.2012.07447.x. hal-00835204 HAL Id: hal-00835204 https://hal.archives-ouvertes.fr/hal-00835204 Submitted on 18 Jun 2013 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. A continental-scale analysis of fish assemblage functional structure in European rivers Maxime Logez*, Pierre Bady†‡, Andreas Melcher◊ and Didier Pont*. * Irstea, UR HBAN, 1 rue Pierre-Gilles de Gennes - CS 10030, F-92761 Antony, France. † University Hospital (CHUV), Rue du Bugnon, 46, 1011 Lausanne, Switzerland. ‡ Swiss Institute of Bioinformatics, Bioinformatics Core Facility, Quartier UNIL-Sorge Bâtiment Génopode, 1015 Lausanne, Switzerland ◊ Department of Water, Atmosphere and Environment, Institute of Hydrobiology and Aquatic Ecosystem Management, University of Natural Resources and Applied Life Sciences, Max-Emanuel-Strasse 17, 1180 Vienna, Austria. Correspondence: Maxime Logez Address: Irstea, UR HBAN, 1 rue Pierre-Gilles de Gennes - CS 10030, F-92761 Antony, France. -
Authorship, Availability and Validity of Fish Names Described By
ZOBODAT - www.zobodat.at Zoologisch-Botanische Datenbank/Zoological-Botanical Database Digitale Literatur/Digital Literature Zeitschrift/Journal: Stuttgarter Beiträge Naturkunde Serie A [Biologie] Jahr/Year: 2008 Band/Volume: NS_1_A Autor(en)/Author(s): Fricke Ronald Artikel/Article: Authorship, availability and validity of fish names described by Peter (Pehr) Simon ForssSSkål and Johann ChrisStian FabricCiusS in the ‘Descriptiones animaliumÂ’ by CarsSten Nniebuhr in 1775 (Pisces) 1-76 Stuttgarter Beiträge zur Naturkunde A, Neue Serie 1: 1–76; Stuttgart, 30.IV.2008. 1 Authorship, availability and validity of fish names described by PETER (PEHR ) SIMON FOR ss KÅL and JOHANN CHRI S TIAN FABRI C IU S in the ‘Descriptiones animalium’ by CAR S TEN NIEBUHR in 1775 (Pisces) RONALD FRI C KE Abstract The work of PETER (PEHR ) SIMON FOR ss KÅL , which has greatly influenced Mediterranean, African and Indo-Pa- cific ichthyology, has been published posthumously by CAR S TEN NIEBUHR in 1775. FOR ss KÅL left small sheets with manuscript descriptions and names of various fish taxa, which were later compiled and edited by JOHANN CHRI S TIAN FABRI C IU S . Authorship, availability and validity of the fish names published by NIEBUHR (1775a) are examined and discussed in the present paper. Several subsequent authors used FOR ss KÅL ’s fish descriptions to interpret, redescribe or rename fish species. These include BROU ss ONET (1782), BONNATERRE (1788), GMELIN (1789), WALBAUM (1792), LA C E P ÈDE (1798–1803), BLO C H & SC HNEIDER (1801), GEO ff ROY SAINT -HILAIRE (1809, 1827), CUVIER (1819), RÜ pp ELL (1828–1830, 1835–1838), CUVIER & VALEN C IENNE S (1835), BLEEKER (1862), and KLUNZIN G ER (1871). -
Resposta Da Comunidade De Carnívoros À Invasão Dos Sistemas
UNIVERSIDADE DE LISBOA FACULDADE DE CIÊNCIAS DEPARTAMENTO DE BIOLOGIA ANIMAL Resposta da comunidade de carnívoros à invasão recente dos sistemas ribeirinhos do NO de Portugal por lagostim-americano (Procambarus clarkii) RAQUEL DA CONCEIÇÃO MILHEIRO MENDES MESTRADO EM BIOLOGIA DA CONSERVAÇÃO 2011 UNIVERSIDADE DE LISBOA FACULDADE DE CIÊNCIAS DEPARTAMENTO DE BIOLOGIA ANIMAL Resposta da comunidade de carnívoros à invasão recente dos sistemas ribeirinhos do NO de Portugal por lagostim-americano (Procambarus clarkii) DISSERTAÇÃO ORIENTADA POR: PROFESSORA DOUTORA MARGARIDA SANTOS-REIS (CBA/DBA-FCUL) PROFESSOR DOUTOR RUI REBELO (CBA/DBA-FCUL) RAQUEL DA CONCEIÇÃO MILHEIRO MENDES MESTRADO EM BIOLOGIA DA CONSERVAÇÃO 2011 Esta tese de mestrado foi desenvolvida no âmbito do Projeto “DILEMA – Espécies invasoras e dilemas de conservação: efeito dos competidores nativos e presas exóticas na dispersão do visão-americano em Portugal”, da responsabilidade do Centro de Biologia Ambiental da Faculdade de Ciências da Universidade de Lisboa (CBA/FCUL) e financiado pela Fundação para a Ciência e Tecnologia (FCT - PTDC/BIA-BEC/ 102433/2008). © Raquel Mendes “There are some who can live without wild things and some who cannot. Like winds and sunsets, wild things were taken for granted until progress began to do away with them. Now we face the question of whether a still higher 'standard of living' is worth its cost in things natural, wild and free.” Aldo Leopold (1949) “A Sand County Almanac” © Raquel Mendes “Man has been reducing diversity by a rapidly increasing -
Dynamics of Rex3 in the Genomes of Endangered Iberian Leuciscinae (Teleostei, Cyprinidae) and Their Natural Hybrids Carla Sofia A
Pereira et al. Molecular Cytogenetics (2015) 8:81 DOI 10.1186/s13039-015-0180-1 RESEARCH Open Access Dynamics of Rex3 in the genomes of endangered Iberian Leuciscinae (Teleostei, Cyprinidae) and their natural hybrids Carla Sofia A. Pereira1* , Marlon F. Pazian1, Petr Ráb2 and Maria João Collares-Pereira1 Abstract Background: Iberian Leuciscinae are greatly diverse comprising taxa of hybrid origin. With highly conservative karyotypes, Iberian Chondrostoma s.l. have recently demonstrated sub-chromosomal differentiation and rapid genome restructuring in natural hybrids, which was confirmed by ribosomal DNA (rDNA) transposition and/or multiplication. To understand the role of repetitive DNAs in the differentiation of their genomes, a genetic and molecular cytogenetic survey was conducted in Achondrostoma oligolepis, Anaecypris hispanica, Iberochondrostoma lemmingii, I. lusitanicum, Pseudochondrostoma duriense, P. polylepis, Squalius pyrenaicus and hybrids between A. oligolepis x(P. duriense/P. polylepis), representing ‘alburnine’, chondrostomine and Squalius lineages. Results: Partial Rex3 sequences evidenced high sequence homology among Leuciscinae (≥98 %) and different fish families (80–95 %) proposing a relatively recent activity of these elements in the species inspected. Low nucleotide substitution rates (<20 %) and intact ORFs suggests that Rex3 may in fact be active in these genomes. The chromosomal distribution of Rex3 retroelement was found highly concentrated at pericentromeric and moderately at subtelomeric blocks, co-localizing with 5S rDNA loci, and correlating with blocks of heterochromatin and C0t-1 DNA. This accumulation was evident in at least 10 chromosome pairs, a pattern that seemed to be shared among the different species, likely pre-dating their divergence. Nevertheless, species-specific clusters were detected in I. lusitanicum, P. -
5. Obratlovci
5. OBRATLOVCI EEncyklopedieNDFF.inddncyklopedieNDFF.indd 367367 110/25/060/25/06 12:58:5512:58:55 PMPM 368 OBRATLOVCI PAPRSKOPLOUTVÍ 5.1 ACTINOPTERYGII – PAPRSKOPLOUTVÍ ACTINOPTERYGII – PAPRSKOPLOUTVÍ Třetí kategorie je tvořena druhy vypuštěnými do přírody akvaris- ty. Zde má smysl zmínit se pouze o koljušce tříostné Gasterosteus Třída paprskoploutví (Actinopterygii), jejíž zástupci se nazývají aculeatus Linnaeus, 1758, zpracované ve formě fact-sheetu. Dále obecně ryby, je nejpočetnější třídou obratlovců. V současnosti se u nás byl z volných vod zaznamenán úlovek blíže neurčených dru- v této třídě rozeznává kolem 45 řádů a něco přes 28 000 druhů. hů jihoamerických piraní. V roce 1998 v Odře u Ostavy14 a v roce V původní fauně ČR byl zastoupen jen zlomek tohoto počtu druhů, 2003 ve slepém rameni Orlice v Hradci Králové22. V Praze ve Vltavě celkem 55. Z toho některé druhy jsou dnes u nás vymizelé. Jed- byl uloven jihoamerický pancéřníček kropenatý Megalechis thora- ná se většinou o tažné anadromní druhy, žijící v dospělosti v moři cata (Valenciennes, 1840)18. V těchto případech se jedná evident- a rozmnožující se ve sladkých vodách. Část z nich se i v minulosti ně o vypuštění nechtěných jedinců z akvarijních chovů, kteří by 5. u nás vyskytovala jen velmi vzácně. Jde o platýze bradavičnatého v našich podmínkách neměli šanci přežít zimní období. Pokud by se Platichthys fl esus (Linnaeus, 1758), placku pomořanskou Alosa alo- měly vzít v úvahu všechny druhy chované v akváriích, byl by výčet sa (Linnaeus, 1758), vyzu velkou Huso huso (Linnaeus, 1758), jese- nepůvodních druhů nalézajících se na území ČR velmi obsáhlý. tera velkého Acipenser sturio (Linnaeus, 1758) a síha Coregonus Některé druhy, pocházející z mírných oblastí, by však potenciálně lavaretus (Linnaeus, 1758).