Forecasting Extinctions: Uncertainties and Limitations
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Redalyc.CONSERVATION GENETICS. APPLYING EVOLUTIONARY
Mètode Science Studies Journal ISSN: 2174-3487 [email protected] Universitat de València España Caballero Rúa, Armando CONSERVATION GENETICS. APPLYING EVOLUTIONARY CONCEPTS TO THE CONSERVATION OF BIOLOGICAL DIVERSITY Mètode Science Studies Journal, núm. 4, 2014, pp. 73-77 Universitat de València Valencia, España Available in: http://www.redalyc.org/articulo.oa?id=511751359009 How to cite Complete issue Scientific Information System More information about this article Network of Scientific Journals from Latin America, the Caribbean, Spain and Portugal Journal's homepage in redalyc.org Non-profit academic project, developed under the open access initiative MONOGRAPH MÈTODE Science Studies Journal, 4 (2014): 73-77. University of Valencia. DOI: 10.7203/metode.78.2452 ISSN: 2174-3487. Article received: 01/03/2013, accepted: 02/05/2013. CONSERVATION GENETICS APPLYING EVOLUTIONARY CONCEPTS TO THE CONSERVATION OF BIOLOGICAL DIVERSITY ARMANDO CABALLERO RÚA Greater understanding of the forces driving evolutionary change and infl uencing populations, together with the latest genetic analysis techniques, have helped conserve of biodiversity for the last twenty years. This new application of genetics is called conservation genetics. Keywords: genetic drift, inbreeding, extinction vortex, effective population size. One of the most pressing problems caused by human 2012) are the pillars supporting conservation genetics. population growth and the irresponsible use of The launch in 2000 of the journal Conservation natural resources is the conservation of biodiversity. Genetics, dealing specifi cally with this fi eld, and Species are disappearing at a breakneck pace and a more recently, in 2009, of the journal Conservation growing number of them require human intervention Genetics Resources highlight the importance of to optimize their management and ensure their this new application of population and evolutionary survival. -
Effective Population Size and Genetic Conservation Criteria for Bull Trout
North American Journal of Fisheries Management 21:756±764, 2001 q Copyright by the American Fisheries Society 2001 Effective Population Size and Genetic Conservation Criteria for Bull Trout B. E. RIEMAN* U.S. Department of Agriculture Forest Service, Rocky Mountain Research Station, 316 East Myrtle, Boise, Idaho 83702, USA F. W. A LLENDORF Division of Biological Sciences, University of Montana, Missoula, Montana 59812, USA Abstract.ÐEffective population size (Ne) is an important concept in the management of threatened species like bull trout Salvelinus con¯uentus. General guidelines suggest that effective population sizes of 50 or 500 are essential to minimize inbreeding effects or maintain adaptive genetic variation, respectively. Although Ne strongly depends on census population size, it also depends on demographic and life history characteristics that complicate any estimates. This is an especially dif®cult problem for species like bull trout, which have overlapping generations; biologists may monitor annual population number but lack more detailed information on demographic population structure or life history. We used a generalized, age-structured simulation model to relate Ne to adult numbers under a range of life histories and other conditions characteristic of bull trout populations. Effective population size varied strongly with the effects of the demographic and environmental variation included in our simulations. Our most realistic estimates of Ne were between about 0.5 and 1.0 times the mean number of adults spawning annually. We conclude that cautious long-term management goals for bull trout populations should include an average of at least 1,000 adults spawning each year. Where local populations are too small, managers should seek to conserve a collection of interconnected populations that is at least large enough in total to meet this minimum. -
Genetic and Demographic Dynamics of Small Populations of Silene Latifolia
Heredity (2003) 90, 181–186 & 2003 Nature Publishing Group All rights reserved 0018-067X/03 $25.00 www.nature.com/hdy Genetic and demographic dynamics of small populations of Silene latifolia CM Richards, SN Emery and DE McCauley Department of Biological Sciences, Vanderbilt University, PO Box 1812, Station B, Nashville, TN 37235, USA Small local populations of Silene alba, a short-lived herbac- populations doubled in size between samples, while others eous plant, were sampled in 1994 and again in 1999. shrank by more than 75%. Similarly, expected heterozygosity Sampling included estimates of population size and genetic and allele number increased by more than two-fold in diversity, as measured at six polymorphic allozyme loci. individual populations and decreased by more than three- When averaged across populations, there was very little fold in others. When population-specific change in number change between samples (about three generations) in and change in measures of genetic diversity were considered population size, measures of within-population genetic together, significant positive correlations were found be- diversity such as number of alleles or expected hetero- tween the demographic and genetic variables. It is specu- zygosity, or in the apportionment of genetic diversity within lated that some populations were released from the and among populations as measured by Fst. However, demographic consequences of inbreeding depression by individual populations changed considerably, both in terms gene flow. of numbers of individuals and genetic composition. Some Heredity (2003) 90, 181–186. doi:10.1038/sj.hdy.6800214 Keywords: genetic diversity; demography; inbreeding depression; gene flow Introduction 1986; Lynch et al, 1995), the interaction of genetics and demography could also influence population persistence How genetics and demography interact to influence in common species, because it is generally accepted that population viability has been a long-standing question in even many abundant species are not uniformly distrib- conservation biology. -
Final Report of the Statewide Ecological Extinction Task Force
FINAL REPORT OF THE STATEWIDE ECOLOGICAL EXTINCTION TASK FORCE ESTABLISHED UNDER THE PROVISIONS OF SENATE CONCURRENT RESOLUTION NO. 20 OF THE 149TH GENERAL ASSEMBLY RESPECTFULLY SUBMITTED TO THE GOVERNOR, PRESIDENT PRO TEMPORE OF THE SENATE, AND SPEAKER OF THE HOUSE DECEMBER 1ST, 2017 TABLE OF CONTENTS MEMBERS OF THE TASK FORCE ............................................................................... 1 PREFACE.................................................................................................................. 2 INTRODUCTION ........................................................................................................ 3 EXECUTIVE SUMMARY BACKGROUND OF THE TASK FORCE .............................................................. 6 OVERVIEW OF MEETINGS .............................................................................. 7 TASK FORCE FINDINGS ............................................................................................ 10 TASK FORCE RECOMMENDATIONS .......................................................................... 11 APPENDICES A. SENATE CONCURRENT RESOLUTION 20 ................................................... 16 B. COMPOSITION OF TASK FORCE AND MEMBER BIOGRAPHIES ................... 19 C. MINUTES FROM TASK FORCE MEETINGS ................................................. 32 D. INTERN REPORT ....................................................................................... 105 E. LINKS TO SUPPLEMENTAL MATERIALS CONTRIBUTED BY TASK FORCE MEMBERS ............................................. -
Conservation Biology and Global Change
honeyeater (Melipotes carolae), a species that had never been described before (Figure 56.1). In 2005, a team of American, Indonesian, and Australian biologists experienced many mo- 56 ments like this as they spent a month cataloging the living riches hidden in a remote mountain range in Indonesia. In addition to the honeyeater, they discovered dozens of new frog, butterfly, and plant species, including five new palms. Conservation To date, scientists have described and formally named about 1.8 million species of organisms. Some biologists think Biology and that about 10 million more species currently exist; others es- timate the number to be as high as 100 million. Some of the Global Change greatest concentrations of species are found in the tropics. Unfortunately, tropical forests are being cleared at an alarm- ing rate to make room for and support a burgeoning human population. Rates of deforestation in Indonesia are among the highest in the world (Figure 56.2). What will become of the smoky honeyeater and other newly discovered species in Indonesia if such deforestation continues unchecked? Throughout the biosphere, human activities are altering trophic structures, energy flow, chemical cycling, and natural disturbance—ecosystem processes on which we and all other species depend (see Chapter 55). We have physically altered nearly half of Earth’s land surface, and we use over half of all accessible surface fresh water. In the oceans, stocks of most major fisheries are shrinking because of overharvesting. By some estimates, we may be pushing more species toward ex- tinction than the large asteroid that triggered the mass ex- tinctions at the close of the Cretaceous period 65.5 million years ago (see Figure 25.16). -
Ecosystem Impact of the Decline of Large Whales in the North Pacific
SIXTEEN Ecosystem Impact of the Decline of Large Whales in the North Pacific DONALD A. CROLL, RAPHAEL KUDELA, AND BERNIE R. TERSHY Biodiversity loss can significantly alter ecosystem processes over a 150-year period (Springer et al. 2003). Although large (Chapin et al. 2000), and ecological extinction can have whales are significant consumers of pelagic prey, such as similar effects (Jackson et al. 2001). For marine vertebrates, schooling fish and euphausiids (krill), the trophic impacts of overharvesting is the main driver of ecological extinction, their removal is not clear (Trites et al. 1999). Indeed, it is and the expansion of fishing fleets into the open ocean has possible that the biomass of prey consumed by large whales precipitated rapid declines in pelagic apex predators such as prior to exploitation exceeded that currently taken by com- whales (Baker and Clapham 2002), sharks (Baum et al. 2003), mercial fisheries (Baker and Clapham 2002), but estimates of tuna, and billfishes (Cox et al. 2002; Christensen et al. 2003), prey consumption by large whales before and after the period leading to a trend in global fisheries toward exploitation of of intense human exploitation are lacking. Given the large lower trophic levels (Pauly et al. 1998a). Globally, many fish biomass of pre-exploitation whale populations (see, e.g., stocks are overexploited (Steneck 1998), and the resulting Whitehead 1995; Roman and Palumbi 2003), their high ecological extinctions have been implicated in the collapse mammalian metabolic rate, and their relatively high trophic of numerous nearshore coastal ecosystems (Jackson et al. position (Trites 2001), it is likely that the removal of large 2001). -
The Oyster : Contributions to Habitat, Biodiversity, & Ecological Resiliency
The Oyster : Contributions to Habitat, Biodiversity, & Ecological Resiliency Factors Affecting Oyster Distribution & Abundance Physical = salinity, temperature Salinity & Temperature •S - dynamic change ~daily basis; T - changes seasonally •Affects community organization - high S & T= predators, disease By Steve Morey, FAMU ‘Oysters suffered significant disease- related mortality under high-salinity, drought conditions, particularly in the summer.’ Dermo Perkinsus marinus Petes et al. 2012. Impacts of upstream drought and water withdrawals on the health & survival of downstream estuarine oyster populations. Ecology & Evolution 2(7):1712-1724 Factors Affecting Oyster Distribution & Abundance Physical = River flow Seasonal River Flow •Major influence on physical & biological relationships •Delivers low salinity H2O, turbidity, high nutrient & detritus concentrations •River flow, when high, can extend far offshore influencing shelf-edge productivity Factors Affecting Oyster Distribution & Abundance Competition for space & food at different life stages • Can be intraspecific -oysters competing with oysters- or interspecific - other species competing with oysters) Oysters • Can affect settlement patterns, and so alter community structure • Can reduce oyster density, growth, or physical condition Oysters eat phytoplankton & other organisms within a small size range, competing with other Barnacles filter feeders Mussels & Tunicates Factors Affecting Oyster Distribution & Abundance Species interactions – predation & disease •Habitat complexity -
Conservation Genetics – Science in the Service of Nature
#0# Acta Biologica 27/2020 | www.wnus.edu.pl/ab | DOI: 10.18276/ab.2020.27-12 | strony 131–141 Conservation genetics – science in the service of nature Cansel Taşkın,1 Jakub Skorupski2 1 Department of Biology, Ankara University, 06930 Ankara, Turkey, ORCID: 0000-0001-6899-701X 2 Institute of Marine and Environmental Sciences, University of Szczecin, Adama Mickiewicza 16 St., 70-383 Szczecin; Polish Society for Conservation Genetics LUTREOLA, Maciejkowa 21 St., 70-374 Szczecin, Poland Corresponding author e-mail: [email protected] Keywords ecogenomics, extinction risk, extinction vortex, genetic load, genomics, inbreeding depression, management units Abstract Conservation genetics is a subdicipline of conservation biology which deals with the extinction risk and many other problems of nature conservation by using genetic tools and techniques. Conservation genetics is a very good example of the practical use of scientific achievements in nature protection. Although its name seems to be self-defining, its specific area of interest, conceptual apparatus and methodological workshop are not widely known and recognizable. The purpose of this review is to clarify any ambiguities and inconsistencies in this respect. It explore what is conservation genetics, what research and practical issues does it deal with and how they can be solved. Genetyka konserwatorska – nauka w służbie przyrody Słowa kluczowe depresja wsobna, ekogenomika, genomika, jednostki zarządzania, obciążenie genetyczne, ryzyko wyginięcia, wir wymierania Streszczenie Genetyka konserwatorska jest subdyscypliną biologii konserwatorskiej, która zajmuje się ryzykiem wyginięcia gatunków i wieloma innymi problemami ochrony przyrody, przy użyciu narzędzi i technik genetycznych. Genetyka konserwatorska jest bardzo dobrym przykładem praktycznego wykorzystania osiągnięć nauki w ochronie przyrody. -
Assessing Symbiont Extinction Risk Using Cophylogenetic Data 2 3 Jorge Doña1 and Kevin P
1 Assessing symbiont extinction risk using cophylogenetic data 2 3 Jorge Doña1 and Kevin P. Johnson1 4 5 1. Illinois Natural History Survey, Prairie Research Institute, University of Illinois at Urbana-Champaign, 6 1816 S. Oak St., Champaign, IL 61820, USA 7 8 *Corresponding authors: Jorge Doña & Kevin Johnson; e-mail: [email protected] & [email protected] 9 10 Abstract: Symbionts have a unique mode of life that has attracted the attention of ecologists and 11 evolutionary biologists for centuries. As a result of this attention, these disciplines have produced 12 a mature body of literature on host-symbiont interactions. In contrast, the discipline of symbiont 13 conservation is still in a foundational stage. Here, we aim to integrate methodologies on symbiont 14 coevolutionary biology with the perspective of conservation. We focus on host-symbiont 15 cophylogenies, because they have been widely used to study symbiont diversification history and 16 contain information on symbiont extinction. However, cophylogenetic information has never been 17 used nor adapted to the perspective of conservation. Here, we propose a new statistic, 18 “cophylogenetic extinction rate” (Ec), based on coevolutionary knowledge, that uses data from 19 event-based cophylogenetic analyses, and which could be informative to assess relative symbiont 20 extinction risks. Finally, we propose potential future research to further develop estimation of 21 symbiont extinction risk from cophylogenetic analyses and continue the integration of this existing 22 knowledge of coevolutionary biology and cophylogenetics into future symbiont conservation 23 studies and practices. 24 25 Keywords: coevolution, coextinction risk, conservation biology, cophylogenies, host-symbiont 26 interactions, parasites. -
Maintaining Humanity's Life Support Systems in the 21St Century
Scientific Consensus on Maintaining Humanity’s Life Support Systems in the 21st Century Information for Policy Makers 02 Contents Essential PointS for PoliCy MakErS ii One-Page Executive Summary ovErviEw of thE fivE Key Problems iii One-Page Overview of Problems and Broad-Brush Solutions Preface: Purpose of this Consensus Statement 1 background information: Dangerous Trends in our Life Support Systems 2 rising to the Challenge 3 Climate Disruption 4 Extinctions 7 Ecosystem Transformation 11 Pollution 14 Population Growth and Resource Consumption 16 Interactions 19 Cited Supporting Studies 21 Some other relevant reports 26 liSt of Supporting-SCiEntiSt Signatures 27 i ESSEntial PointS FOR PoliCy MakErS Scientific Consensus on Maintaining Humanity’s Life Support Systems in the 21st Century Earth is rapidly approaching a tipping point. Human impacts are causing alarming levels of harm to our planet. As scientists who study the interaction of people with the rest of the biosphere using a wide range of approaches, we agree that the evidence that humans are damaging their ecological life-support systems is overwhelming. We further agree that, based on the best scientific information available, human quality of life will suffer substantial degradation by the year 2050 if we continue on our current path. Science unequivocally demonstrates the human impacts of key concern: • Climate disruption — more, faster climate change than since humans first became a species • Extinctions — not since the dinosaurs went extinct have so many species and populations died out so fast, both on land and in the oceans. • Wholesale loss of diverse ecosystems — we have plowed, paved, or otherwise transformed more than 40% of Earth’s ice-free land, and no place on land or in the sea is free of our direct or indirect influences. -
Conservation Biology Conservation Genetics
DOTTORATO IN SCIENZE AMBIENTALI Genetica e conservazione della biodiversità Ettore Randi Laboratorio di Genetica ISPRA, sede di Ozzano Emilia (BO) Università di Bologna [email protected] giovedì 1 ottobre ore 14:30-17:30 1 genetica, genomica e conservazione della biodiversità 2 conseguenze genetiche della frammentazione venerdì 2 ottobre ore 14:30-17:30 3 ibridazione naturale e antropogenica 4 monitoraggio genetico delle popolazioni naturali Corso di Dottorato in Scienze Ambientali – Università degli Studi di Milano Coordinatore: Prof. Nicola Saino; [email protected] website: http://www.environsci.unimi.it/ Genetica, genomica e conservazione della biodiversità Ettore Randi Laboratorio di Genetica ISPRA, sede di Ozzano Emilia (BO) [email protected] Images dowloaded for non-profit educational presentation use only Transition from conservation GENETICS to conservation GENOMICS Next-generation (massive parallel) sequencing: … not simply more markers Conservation Biology 1980 1986 Conservation Genetics “Conservation genetics: the theory and practice of genetics in the preservation of species as dynamic entities capable of evolving to cope with environmental change to minimize their risk of extinction” Conservation Genetics/Genomics Genetic diversity is the driver and the consequence of biological evolution protection & conservation of biodiversity protection & conservation of the processes & products of evolution The Convention on Biological Diversity CDB Rio de Janeiro 1992 Biodiversity Biodiversity = the diversity -
4 Genetics of Small Populations: the Case of the Laysan Finch
Case Studies in Ecology and Evolution DRAFT 4 Genetics of Small Populations: the case of the Laysan Finch In 1903, rabbits were introduced to a tiny island in the Hawaiian archipelago called Laysan Island. That island is only 187 ha in size, in the middle of the Pacific Ocean about 1000 km northeast of Hawaii. Despite the benign intentions for having rabbits on the island, the released rabbits quickly multiplied and devoured most of the vegetation. Oceanic islands are often home to unique or endemic species that have evolved in isolation. Laysan was no exception. Well-known examples of island endemics include the finches on the Galapagos Islands and the dodo that was only known from the islands of Mauritius. On Laysan there were several species of birds and plants that were known only from that single island. The introduced rabbits on the island destroyed the food supply for various species of land birds. Several endemic species of plants and animals were driven extinct, including the Laysan rail, the Laysan honeycreeper, the millerbird, and plants like the Laysan fan palm. Only 4 of 26 species of plants remained on the island in 1923, 20 years after the rabbits first arrived. Populations of other species declined to very small levels. One of the two surviving endemic land birds was a small finch called the Laysan finch, Telespiza cantans. After the rabbits were finally exterminated in 1923, the population of finches recovered on Laysan Island. Over the last four decades the average population size of on Laysan Island has been about 11,000 birds.