Curriculum Vitae
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1307 Fungi Representing 1139 Infrageneric Taxa, 317 Genera and 66 Families ⇑ Jolanta Miadlikowska A, , Frank Kauff B,1, Filip Högnabba C, Jeffrey C
Molecular Phylogenetics and Evolution 79 (2014) 132–168 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families ⇑ Jolanta Miadlikowska a, , Frank Kauff b,1, Filip Högnabba c, Jeffrey C. Oliver d,2, Katalin Molnár a,3, Emily Fraker a,4, Ester Gaya a,5, Josef Hafellner e, Valérie Hofstetter a,6, Cécile Gueidan a,7, Mónica A.G. Otálora a,8, Brendan Hodkinson a,9, Martin Kukwa f, Robert Lücking g, Curtis Björk h, Harrie J.M. Sipman i, Ana Rosa Burgaz j, Arne Thell k, Alfredo Passo l, Leena Myllys c, Trevor Goward h, Samantha Fernández-Brime m, Geir Hestmark n, James Lendemer o, H. Thorsten Lumbsch g, Michaela Schmull p, Conrad L. Schoch q, Emmanuël Sérusiaux r, David R. Maddison s, A. Elizabeth Arnold t, François Lutzoni a,10, Soili Stenroos c,10 a Department of Biology, Duke University, Durham, NC 27708-0338, USA b FB Biologie, Molecular Phylogenetics, 13/276, TU Kaiserslautern, Postfach 3049, 67653 Kaiserslautern, Germany c Botanical Museum, Finnish Museum of Natural History, FI-00014 University of Helsinki, Finland d Department of Ecology and Evolutionary Biology, Yale University, 358 ESC, 21 Sachem Street, New Haven, CT 06511, USA e Institut für Botanik, Karl-Franzens-Universität, Holteigasse 6, A-8010 Graz, Austria f Department of Plant Taxonomy and Nature Conservation, University of Gdan´sk, ul. Wita Stwosza 59, 80-308 Gdan´sk, Poland g Science and Education, The Field Museum, 1400 S. -
Lichen Functional Trait Variation Along an East-West Climatic Gradient in Oregon and Among Habitats in Katmai National Park, Alaska
AN ABSTRACT OF THE THESIS OF Kaleigh Spickerman for the degree of Master of Science in Botany and Plant Pathology presented on June 11, 2015 Title: Lichen Functional Trait Variation Along an East-West Climatic Gradient in Oregon and Among Habitats in Katmai National Park, Alaska Abstract approved: ______________________________________________________ Bruce McCune Functional traits of vascular plants have been an important component of ecological studies for a number of years; however, in more recent times vascular plant ecologists have begun to formalize a set of key traits and universal system of trait measurement. Many recent studies hypothesize global generality of trait patterns, which would allow for comparison among ecosystems and biomes and provide a foundation for general rules and theories, the so-called “Holy Grail” of ecology. However, the majority of these studies focus on functional trait patterns of vascular plants, with a minority examining the patterns of cryptograms such as lichens. Lichens are an important component of many ecosystems due to their contributions to biodiversity and their key ecosystem services, such as contributions to mineral and hydrological cycles and ecosystem food webs. Lichens are also of special interest because of their reliance on atmospheric deposition for nutrients and water, which makes them particularly sensitive to air pollution. Therefore, they are often used as bioindicators of air pollution, climate change, and general ecosystem health. This thesis examines the functional trait patterns of lichens in two contrasting regions with fundamentally different kinds of data. To better understand the patterns of lichen functional traits, we examined reproductive, morphological, and chemical trait variation along precipitation and temperature gradients in Oregon. -
Lichens and Associated Fungi from Glacier Bay National Park, Alaska
The Lichenologist (2020), 52,61–181 doi:10.1017/S0024282920000079 Standard Paper Lichens and associated fungi from Glacier Bay National Park, Alaska Toby Spribille1,2,3 , Alan M. Fryday4 , Sergio Pérez-Ortega5 , Måns Svensson6, Tor Tønsberg7, Stefan Ekman6 , Håkon Holien8,9, Philipp Resl10 , Kevin Schneider11, Edith Stabentheiner2, Holger Thüs12,13 , Jan Vondrák14,15 and Lewis Sharman16 1Department of Biological Sciences, CW405, University of Alberta, Edmonton, Alberta T6G 2R3, Canada; 2Department of Plant Sciences, Institute of Biology, University of Graz, NAWI Graz, Holteigasse 6, 8010 Graz, Austria; 3Division of Biological Sciences, University of Montana, 32 Campus Drive, Missoula, Montana 59812, USA; 4Herbarium, Department of Plant Biology, Michigan State University, East Lansing, Michigan 48824, USA; 5Real Jardín Botánico (CSIC), Departamento de Micología, Calle Claudio Moyano 1, E-28014 Madrid, Spain; 6Museum of Evolution, Uppsala University, Norbyvägen 16, SE-75236 Uppsala, Sweden; 7Department of Natural History, University Museum of Bergen Allégt. 41, P.O. Box 7800, N-5020 Bergen, Norway; 8Faculty of Bioscience and Aquaculture, Nord University, Box 2501, NO-7729 Steinkjer, Norway; 9NTNU University Museum, Norwegian University of Science and Technology, NO-7491 Trondheim, Norway; 10Faculty of Biology, Department I, Systematic Botany and Mycology, University of Munich (LMU), Menzinger Straße 67, 80638 München, Germany; 11Institute of Biodiversity, Animal Health and Comparative Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow G12 8QQ, UK; 12Botany Department, State Museum of Natural History Stuttgart, Rosenstein 1, 70191 Stuttgart, Germany; 13Natural History Museum, Cromwell Road, London SW7 5BD, UK; 14Institute of Botany of the Czech Academy of Sciences, Zámek 1, 252 43 Průhonice, Czech Republic; 15Department of Botany, Faculty of Science, University of South Bohemia, Branišovská 1760, CZ-370 05 České Budějovice, Czech Republic and 16Glacier Bay National Park & Preserve, P.O. -
A Multigene Phylogenetic Synthesis for the Class Lecanoromycetes (Ascomycota): 1307 Fungi Representing 1139 Infrageneric Taxa, 317 Genera and 66 Families
A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families Miadlikowska, J., Kauff, F., Högnabba, F., Oliver, J. C., Molnár, K., Fraker, E., ... & Stenroos, S. (2014). A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families. Molecular Phylogenetics and Evolution, 79, 132-168. doi:10.1016/j.ympev.2014.04.003 10.1016/j.ympev.2014.04.003 Elsevier Version of Record http://cdss.library.oregonstate.edu/sa-termsofuse Molecular Phylogenetics and Evolution 79 (2014) 132–168 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families ⇑ Jolanta Miadlikowska a, , Frank Kauff b,1, Filip Högnabba c, Jeffrey C. Oliver d,2, Katalin Molnár a,3, Emily Fraker a,4, Ester Gaya a,5, Josef Hafellner e, Valérie Hofstetter a,6, Cécile Gueidan a,7, Mónica A.G. Otálora a,8, Brendan Hodkinson a,9, Martin Kukwa f, Robert Lücking g, Curtis Björk h, Harrie J.M. Sipman i, Ana Rosa Burgaz j, Arne Thell k, Alfredo Passo l, Leena Myllys c, Trevor Goward h, Samantha Fernández-Brime m, Geir Hestmark n, James Lendemer o, H. Thorsten Lumbsch g, Michaela Schmull p, Conrad L. Schoch q, Emmanuël Sérusiaux r, David R. Maddison s, A. Elizabeth Arnold t, François Lutzoni a,10, -
A Provisional Checklist of the Lichens of Belarus
Opuscula Philolichenum, 17: 374-479. 2018. *pdf effectively published online 31December2018 via (http://sweetgum.nybg.org/philolichenum/) A Provisional Checklist of the Lichens of Belarus ANDREI TSURYKAU1 ABSTRACT. – A total of 606 species and five subspecific taxa of lichens and allied fungi are documented from Belarus based on combined historical (pre-1980) and modern (post-1980) records. Of these, 50 (8.3%) are represented by only historical reports, 235 (38.8%) are represented by only modern vouchers, and 310 (51.2%) are represented by both historical and modern records. Eleven species are known only from generalized published reports that lacked specific location data. Eighty-eight species are excluded as erroneous reports, or considered as doubtful records. KEYWORDS. – Biodiversity, distribution, lichenized fungi, historical baseline. INTRODUCTION Published accounts of the lichens of Belarus date to the end of the 18th century (Gilibert 1781). In the first phase of lichenological discovery in the country (1780–1900) lichens did not attract special attention and were reported among the general lists of vascular plants and fungi. However, 49 species were reported by the French botanist J.E. Gilibert, the Russian ethnographer of Belarusian origin N. Downar (Dovnar-Zapol'skiy) and Polish botanists K. Filipowicz and F. Błoński (Błoński 1888, 1889; Downar 1861; Filipowicz 1881; Gilibert 1781, 1792). In the early 20th century (1900–1925), there was a second phase of lichenological discovery in Belarus. During that time, Belarusian pioneer lichenologist V.P. Savicz and his wife L.I. Ljubitzkaja (later Savicz-Ljubitzkaja) reported 91 species new to the country (Ljubitzkaja 1914; Savicz 1909, 1910, 1911, 1925; Savicz & Savicz 1924; Wyssotzky et al. -
TB1066 Current Stateof Knowledge and Research on Woodland
June 2020 A Review of the Relationship Between Flow,Current Habitat, State and of Biota Knowledge in LOTIC and SystemsResearch and on Methods Woodland for Determining Caribou Instreamin Canada Low Requirements 9491066 Current State of Knowledge and Research on Woodland Caribou in Canada No 1066 June 2020 Prepared by Kevin A. Solarik, PhD NCASI Montreal, Quebec National Council for Air and Stream Improvement, Inc. Acknowledgments A great deal of thanks is owed to Dr. John Cook of NCASI for his considerable insight and the revisions he provided in improving earlier drafts of this report. Helpful comments on earlier drafts were also provided by Kirsten Vice, NCASI. For more information about this research, contact: Kevin A. Solarik, PhD Kirsten Vice NCASI NCASI Director of Forestry Research, Canada and Vice President, Sustainable Manufacturing and Northeastern/Northcentral US Canadian Operations 2000 McGill College Avenue, 6th Floor 2000 McGill College Avenue, 6th Floor Montreal, Quebec, H3A 3H3 Canada Montreal, Quebec, H3A 3H3 Canada (514) 907-3153 (514) 907-3145 [email protected] [email protected] To request printed copies of this report, contact NCASI at [email protected] or (352) 244-0900. Cite this report as: NCASI. 2020. Current state of knowledge and research on woodland caribou in Canada. Technical Bulletin No. 1066. Cary, NC: National Council for Air and Stream Improvement, Inc. Errata: September 2020 - Table 3.1 (page 34) and Table 5.2 (pages 55-57) were edited to correct omissions and typos in the data. © 2020 by the National Council for Air and Stream Improvement, Inc. EXECUTIVE SUMMARY • Caribou (Rangifer tarandus) is a species of deer that lives in the tundra, taiga, and forest habitats at high latitudes in the northern hemisphere, including areas of Russia and Scandinavia, the United States, and Canada. -
Aqhaliat-2018-EN-Full-Report.Pdf
POLAR KNOWLEDGE Aqhaliat Table of Contents ECOSYSTEM SCIENCE .....................................................................................................1 Lichens in High Arctic ecosystems: Recommended research directions for assessing diversity and function near the Canadian High Arctic Research Station, Cambridge Bay, Nunavut ........................................................................................................................................ 1 Vascular synphenology of plant communities around Cambridge Bay, Victoria Island, Nunavut, during the growing season of 2015 .............................................................................. 9 The distribution and abundance of parasites in harvested wildlife from the Canadian North: A review .......................................................................................................................... 20 Fire in the Arctic: The effect of wildfire across diverse aquatic ecosystems of the Northwest Territories ................................................................................................................. 31 Arctic marine ecology benchmarking program: Monitoring biodiversity using scuba ............... 39 For more information about Polar Knowledge Canada, or for additional copies of this report, contact: Stratification in the Canadian Arctic Archipelago’s Kitikmeot Sea: Biological and geochemical consequences ........................................................................................................ 46 Polar Knowledge -
Testing DNA Barcoding in Usnea (Parmeliaceae) in Colombia Using the Internal Transcribed Spacer (ITS)
Plant and Fungal Systematics 65(2): 358–385, 2020 ISSN 2544-7459 (print) DOI: https://doi.org/10.35535/pfsyst-2020-0026 ISSN 2657-5000 (online) Testing DNA barcoding in Usnea (Parmeliaceae) in Colombia using the internal transcribed spacer (ITS) Bibiana Moncada1,3, Harrie J. M. Sipman2 & Robert Lücking2,3* Abstract. We tested the functionality of ITS-based DNA barcoding in lichen fungi using Article info Colombian samples of the genus Usnea as an example. New ITS sequences were generated Received: 13 Aug. 2020 for 15 samples from five localities in two different ecoregions, representing varying mor- Revision received: 11 Nov. 2020 phologies and medullary chemistries. We employed five strategies to identify the samples: Accepted: 11 Nov. 2020 (1) BLASTn on the NCBI BLAST site with the original identifications of the best match- Published: 29 Dec. 2020 ing reference sequences; (2) as previous, but with revised identifications of the reference Associate Editor sequences based on a separately published revision of ITS sequences published for the Camille Truong genus; (3) local BLASTn in BioEdit using a separately published, revised and curated set of ITS reference sequences for the genus; (4) multiple alignment based phylogenetic analysis within the framework of all available ITS sequences for Usnea s.str.; and (5) integrative taxonomy, combining molecular phylogeny and comparative analysis of phenotype and chemical data. Using the latter approach as reference, we found that NCBI BLASTn with original identifications performed poorly, resulting in an identification success rate of only 7% (a single sample). NCBI BLASTn with revised identifications more than tripled iden- tification success (23%), but was still unsatisfactory. -
Myconet Volume 14 Part One. Outine of Ascomycota – 2009 Part Two
(topsheet) Myconet Volume 14 Part One. Outine of Ascomycota – 2009 Part Two. Notes on ascomycete systematics. Nos. 4751 – 5113. Fieldiana, Botany H. Thorsten Lumbsch Dept. of Botany Field Museum 1400 S. Lake Shore Dr. Chicago, IL 60605 (312) 665-7881 fax: 312-665-7158 e-mail: [email protected] Sabine M. Huhndorf Dept. of Botany Field Museum 1400 S. Lake Shore Dr. Chicago, IL 60605 (312) 665-7855 fax: 312-665-7158 e-mail: [email protected] 1 (cover page) FIELDIANA Botany NEW SERIES NO 00 Myconet Volume 14 Part One. Outine of Ascomycota – 2009 Part Two. Notes on ascomycete systematics. Nos. 4751 – 5113 H. Thorsten Lumbsch Sabine M. Huhndorf [Date] Publication 0000 PUBLISHED BY THE FIELD MUSEUM OF NATURAL HISTORY 2 Table of Contents Abstract Part One. Outline of Ascomycota - 2009 Introduction Literature Cited Index to Ascomycota Subphylum Taphrinomycotina Class Neolectomycetes Class Pneumocystidomycetes Class Schizosaccharomycetes Class Taphrinomycetes Subphylum Saccharomycotina Class Saccharomycetes Subphylum Pezizomycotina Class Arthoniomycetes Class Dothideomycetes Subclass Dothideomycetidae Subclass Pleosporomycetidae Dothideomycetes incertae sedis: orders, families, genera Class Eurotiomycetes Subclass Chaetothyriomycetidae Subclass Eurotiomycetidae Subclass Mycocaliciomycetidae Class Geoglossomycetes Class Laboulbeniomycetes Class Lecanoromycetes Subclass Acarosporomycetidae Subclass Lecanoromycetidae Subclass Ostropomycetidae 3 Lecanoromycetes incertae sedis: orders, genera Class Leotiomycetes Leotiomycetes incertae sedis: families, genera Class Lichinomycetes Class Orbiliomycetes Class Pezizomycetes Class Sordariomycetes Subclass Hypocreomycetidae Subclass Sordariomycetidae Subclass Xylariomycetidae Sordariomycetes incertae sedis: orders, families, genera Pezizomycotina incertae sedis: orders, families Part Two. Notes on ascomycete systematics. Nos. 4751 – 5113 Introduction Literature Cited 4 Abstract Part One presents the current classification that includes all accepted genera and higher taxa above the generic level in the phylum Ascomycota. -
Usnea Esperantiana (Parmeliaceae, Lichenized Ascomycota) New to Asia
Bull. Natl. Mus. Nat. Sci., Ser. B, 47(1), pp. 13–20, February 22, 2021 Usnea esperantiana (Parmeliaceae, lichenized Ascomycota) New to Asia Yoshihito Ohmura1, * and Philippe Clerc2 1 Department of Botany, National Museum of Nature and Science, 4–1–1 Amakubo, Tsukuba, Ibaraki, 305–0005, Japan 2 Conservatoire et Jardin botaniques de la Ville de Genève, Geneva, Switzerland *E-mail: [email protected] (Received 26 November 2020; accepted 23 December 2020) Abstract Usnea esperantiana is reported as new to Asia. It was collected from Taiwan where it grew on coniferous and broad-leaf trees at elevations between 1716 and 2580 m. The ITS rDNA sequences of Taiwanese and European materials of U. esperantiana form a monophyletic clade within the already reported clade consisting of U. cornuta and the related taxa. Although two dis- tinct clades were formed in the U. esperantiana clade, no morphological and chemical differences were found between them. All Taiwanese specimens contain usnic, salazinic and bourgeanic acids. The description is given based on the Taiwanese specimens. Keywords : chemistry, distribution, ITS rDNA, lichenized fungi, morphology, phylogeny, soralia, Taiwan, taxonomy. Introduction Materials and Methods The genus Usnea (Parmeliaceae, lichenized This study is based on the examinations of Ascomycota) in Taiwan was primarily revised by herbarium specimens housed in the herbarium of the first author and 41 accepted taxa were the National Museum of Nature and Science reported before the present study (Ohmura, 2001, (TNS), Tsukuba, Japan. 2012, 2014; Ohmura et al., 2010). Morphological observations for identification During the course of taxonomic study of the were made using a dissecting microscope and a genus Usnea in Taiwan, U. -
Alectoria Spinosa, a New Lichen Species from Hengduan Mountains, China
Mycosphere 6 (2): 159–164 (2015) ISSN 2077 7019 www.mycosphere.org Article Mycosphere Copyright © 2015 Online Edition Doi 10.5943/mycosphere/6/2/6 Alectoria spinosa, a new lichen species from Hengduan Mountains, China Wang LS1, Liu D1, Shi HX2, Zhang YY1, Ye X2, Chen XL3 and Wang XY1 1Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, CAS, Kunming, Yunnan 650204, China 2Yunnan University of Traditional Chinese Medicine, Kunming, Yunnan 650500, China 3Institute of Applied Ecology, Chinese of Sciences, Shenyang 110016, China Wang LS, Liu D, Shi HX, Zhang YY, Ye X, Chen XL, Wang XY 2015 – Alectoria spinosa, a new lichen species from Hengduan Mountains, China. Mycosphere 6(2), 159–164, Doi 10.5943/mycosphere/6/2/6 Abstract Based on inferences from morphological, chemical and phylogenetic analysis using ITS sequences, a new species of Alectoria is described from the Hengduan Mountains in southwestern China, A. spinosa Li S. Wang & Xin Y. Wang sp. nov, it has dull yellowish fruticose thallus with abundant pseudocyphellae, which is the main character of Alectoria, and differs from all the other Alectoria species by having isidia-like spinules on the soralia. Two species of Alectoria are confirmed in China, their morphological and chemical traits, together with their geographical distributions in China, are discussed, and a key to the species is provided. Key words – Lichenized fungi – Parmeliaceae – phylogeny – taxonomy Introduction Alectoria Ach. (Parmeliaceae, Lecanorales; Tehler & Wedin 2008), typified -
Annotated Checklists of Bryophytes and Lichens Cape Prince of Wales, Alaska, U.S.A
Annotated Checklists of Bryophytes and Lichens Cape Prince of Wales, Alaska, U.S.A. by JoAnn W. Flock, Museum Associate, University of Colorado Herbarium Version 1, May 10, 2011 Cape Prince of Wales, from Cape Mountain Photo by Tass Kelso Location of the study area on the tip of the Seward Peninsula on the west coast of Alaska. CONTENTS INTRODUCTION .......................................................................................................................... 2 DESCRIPTION OF THE STUDY AREA ..................................................................................... 3 ANNOTATED CHECKLIST OF BRYOPHYTES ....................................................................... 4 MOSSES ..................................................................................................................................... 4 LIVERWORTS ......................................................................................................................... 14 ANNOTATED CHECKLIST OF LICHENS ............................................................................... 16 REFERENCES TO LICHEN COLLECTIONS AND EXPEDITIONS IN ALASKA- CANADA ................................................................................................................................. 29 ACKNOWLEDGEMENTS .......................................................................................................... 30 INTRODUCTION In June 1978, I had the good fortune to spend two weeks at Cape Prince of Wales on the western tip of Alaska's Seward Peninsula