Eschscholzia Californica)
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Functional analysis of carpel developmental genes in California poppy (Eschscholzia californica) Funktionelle Analyse von Karpel Entwicklungsgenen im Kalifornischen Mohn (Eschscholzia californica) A DISSERTATION In the field of Botany Presented to the Justus Liebig University of Giessen In Partial Fulfillment of the Requirements for the Degree of Doctor of Science (Dr.rer.nat) Aravinda L Yellina From India Giessen 2015 Reviewer: Prof. Dr. Annette Becker Developmental Biology of plants Justus-Liebig-University of Giessen Prof. Dr. Karl-Heinz Kogel Institute of Phytopathology Justus-Liebig-University of Giessen Examiner: Prof. Dr. Volker Wissemann Systematic Botany Justus-Liebig-University of Giessen PD Dr. Birgit Gemeinholzer Systematic Botany Justus-Liebig-University of Giessen Acknowledgements Firstly, I owe a deep debt to my supervisor Prof. Dr. Annette Becker for her continuous support, valuable guidance, immense knowledge, kind encouragement, and critical review of my thesis. My deepest appreciation goes to other members of my dissertation committee: Prof. Dr. Karl- Heinz Kogel, Prof. Dr. Volker Wissemann, and PD. Dr. Birgit Gemeinholzer for their precious support and guidance to finish this project. I owe a special indebt to Prof. Dr. Wolfgang Heyser, Plant physiology, University of Bremen for giving me valuable advice during optimization of regeneration protocol of E. californica. My greatest appreciation goes to Mathias, Svetlana, and Kai for their constant support and critical review of my dissertation. My heartfelt gratitude goes to my colleagues Mathias, Svetlana and Robert for providing me friendly atmosphere throughout my Ph.D. program. My special thanks goes to all other members of AG Becker, especially Sabrina, Tina Stickan, Amey, Gitanjali, Anna, Dawit, and Sally for their generous hospitality and excellent cooperation. Special thanks to Bremen Andhra friends for providing me pleasant environment, homely atmosphere, and unforgettable care during my stay in Bremen. I am greatly indebted to my uncle Dr. Ramachandram for his moral support, enthusiasm and positive critics in writing up my dissertation. I owe a special indebt to my mother, without her support and inspiration I cannot complete this project. My special thanks to my father, my sisters and all other family members for providing me constant support and eternal inspiration to complete this work. Finally, yet importantly, my heartfelt thanks to my soul mate and my children for their incredible support, immense joy and blissful environment in order to pursue this study. Table of Contents SUMMARY ................................................................................................................................... 1 ZUSAMMENFASSUNG .............................................................................................................. 3 1 INTRODUCTION............................................................................................................. 5 1.1 Evolutionary developmental biology of angiosperm flower .......................................... 5 1.2 Molecular genetics of flower development ..................................................................... 9 1.2.1 Floral organ specification ......................................................................................... 9 1.2.2 ABCE model of the flower organ development ..................................................... 10 1.3 MADS-box genes are the main players of flower development .................................. 12 1.4 Origin and evolution of the carpel ................................................................................. 14 1.4.1 Morphogenesis of the Arabidopsis thaliana carpels ............................................... 16 1.4.2 Molecular genetics of carpel development in A. thaliana ...................................... 18 1.5 Carpel identity as specified by C-class MADS-box genes ........................................... 23 1.6 California poppy (Eschscholzia californica) is a versatile model species for evolutionary developmental genetics............................................................................. 25 1.6.1 Unique morphogenetic characteristics of California poppy ................................... 25 1.6.2 Morphogenesis of E.californica gynoecium ........................................................... 26 2 OBJECTIVES ................................................................................................................. 29 3 MATERIALS .................................................................................................................. 30 3.1 Plant material used ......................................................................................................... 30 3.2 Bacterial strains used ...................................................................................................... 30 3.3 Vectors used ..................................................................................................................... 30 3.4 Nucleic acid manipulation .............................................................................................. 31 3.4.1 PCR ......................................................................................................................... 31 3.4.2 Restriction digestion ............................................................................................... 31 3.4.3 Ligation ................................................................................................................... 31 3.5 Nucleic acid analysis ....................................................................................................... 31 3.5.1 Gel electrophoresis.................................................................................................. 31 3.5.2 Isolation of RNA ..................................................................................................... 31 3.5.3 cDNA synthesis: ..................................................................................................... 31 3.5.4 RT-PCR reaction mixture ....................................................................................... 32 3.5.5 qRT-PCR................................................................................................................. 32 3.5.6 Sequencing .............................................................................................................. 32 3.6 Phenotypic analysis ......................................................................................................... 32 3.6.1 SEM ........................................................................................................................ 32 3.6.2 Histology ................................................................................................................. 32 3.6.3 Growth media .......................................................................................................... 32 3.7 Genomic DNA isolation by CTAB method ................................................................... 33 3.8 Southern blotting ............................................................................................................ 34 3.9 Transient GUS assay....................................................................................................... 34 3.10 VIGS infiltration buffer ................................................................................................. 34 3.11 Other buffers used .......................................................................................................... 34 3.12 Enzymes used .................................................................................................................. 35 4 METHODS ...................................................................................................................... 36 4.1 Preparation of plant material ........................................................................................ 36 4.2 Plasmid vector construction ........................................................................................... 36 4.2.1 Construction of VIGS-based vectors ...................................................................... 36 4.2.2 Construction of stable transformation based vectors .............................................. 37 4.3 Bacteria manipulation .................................................................................................... 38 4.3.1 Preparation of competent cells for E. coli and Agrobacterium ............................... 38 4.3.2 Transformation of E. coli through Electroporation ................................................. 39 4.3.3 Transformation of E.coli through freeze-thaw method ........................................... 39 4.3.4 Transformation of A. tumefaciens through Electroporation ................................... 39 4.3.5 Agrobacterium culture preparation for stable transformation ................................ 40 4.3.6 Agrobacterium culture preparation for VIGS ......................................................... 40 4.4 Plant manipulation.......................................................................................................... 41 4.4.1 Agroinfiltration for inducing VIGS ........................................................................ 41 4.4.2 Agrobacterium-mediated stable transformation ..................................................... 41 4.4.3 Callus induction and somatic embryogenesis ........................................................