Effect of Removal of Organic Material on Stable Isotope Ratios in Skeletal Carbonate from Taxonomic Groups with Complex Mineralogies
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Evolutionary History of Inversions in the Direction of Architecture-Driven
bioRxiv preprint doi: https://doi.org/10.1101/2020.05.09.085712; this version posted May 10, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Evolutionary history of inversions in the direction of architecture- driven mutational pressures in crustacean mitochondrial genomes Dong Zhang1,2, Hong Zou1, Jin Zhang3, Gui-Tang Wang1,2*, Ivan Jakovlić3* 1 Key Laboratory of Aquaculture Disease Control, Ministry of Agriculture, and State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China. 2 University of Chinese Academy of Sciences, Beijing 100049, China 3 Bio-Transduction Lab, Wuhan 430075, China * Corresponding authors Short title: Evolutionary history of ORI events in crustaceans Abbreviations: CR: control region, RO: replication of origin, ROI: inversion of the replication of origin, D-I skew: double-inverted skew, LBA: long-branch attraction bioRxiv preprint doi: https://doi.org/10.1101/2020.05.09.085712; this version posted May 10, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Abstract Inversions of the origin of replication (ORI) of mitochondrial genomes produce asymmetrical mutational pressures that can cause artefactual clustering in phylogenetic analyses. It is therefore an absolute prerequisite for all molecular evolution studies that use mitochondrial data to account for ORI events in the evolutionary history of their dataset. -
Brachiopoda from the Southern Indian Ocean (Recent)
I - MMMP^j SA* J* Brachiopoda from the Southern Indian Ocean (Recent) G. ARTHUR COOPER m CONTRIBUTIONS TO PALEOBIOLOGY • NUMBER SERIES PUBLICATIONS OF THE SMITHSONIAN INSTITUTION Emphasis upon publication as a means of "diffusing knowledge" was expressed by the first Secretary of the Smithsonian. In his formal plan for the Institution, Joseph Henry outlined a program that included the following statement: "It is proposed to publish a series of reports, giving an account of the new discoveries in science, and of the changes made from year to year in all branches of knowledge." This theme of basic research has been adhered to through the years by thousands of titles issued in series publications under the Smithsonian imprint, commencing with Smithsonian Contributions to Knowledge in 1848 and continuing with the following active series: Smithsonian Contributions to Anthropology Smithsonian Contributions to Astrophysics Smithsonian Contributions to Botany Smithsonian Contributions to the Earth Sciences Smithsonian Contributions to the Marine Sciences Smithsonian Contributions to Paleobiology Smithsonian Contributions to Zoology Smithsonian Studies in Air and Space Smithsonian Studies in History and Technology In these series, the Institution publishes small papers and full-scale monographs that report the research and collections of its various museums and bureaux or of professional colleagues in the world of science and scholarship. The publications are distributed by mailing lists to libraries, universities, and similar institutions throughout the world. Papers or monographs submitted for series publication are received by the Smithsonian Institution Press, subject to its own review for format and style, only through departments of the various Smithsonian museums or bureaux, where the manuscripts are given substantive review. -
University of Cape Town
The copyright of this thesis vests in the author. No quotation from it or information derived from it is to be published without full acknowledgementTown of the source. The thesis is to be used for private study or non- commercial research purposes only. Cape Published by the University ofof Cape Town (UCT) in terms of the non-exclusive license granted to UCT by the author. University Taxonomy, Systematics and Biogeography of South African Cirripedia (Thoracica) Aiden Biccard Town A thesis submitted in fulfilment of the degreeCape of Master of Science in the Department of Zoology, Faculty of Science, University of Cape Town Supervisor Prof. Charles L. Griffiths University 1 Town “and whatever the man called every livingCape creature, that was its name.” - Genesis 2:19 of University 2 Plagiarism declaration This dissertation documents the results of original research carried out at the Marine Biology Research Centre, Zoology Department, University of Cape Town. This work has not been submitted for a degree at any other university and any assistance I received is fully acknowledged. The following paper is included in Appendix B for consideration by the examiner. As a supervisor of the project undertaken by T. O. Whitehead, I participated in all of the field work and laboratory work involved for the identification of specimens and played a role in the conceptualisation of the project. Figure 1 was compiled by me. Town Whitehead, T. O., Biccard, A. and Griffiths, C. L., 2011. South African pelagic goose barnacles (Cirripedia, Thoracica): substratum preferences and influences of plastic debris on abundance and distribution. Crustaceana, 84(5-6): 635-649. -
University of California Santa Cruz
UNIVERSITY OF CALIFORNIA SANTA CRUZ THE ROLE OF SUBSTRATE PREFERENCE IN MESOZOIC BRACHIOPOD DECLINE A thesis submitted in partial satisfaction of the requirements for the degree of MASTER OF SCIENCE in EARTH SCIENCES by Marko Manojlovic September 2017 The Thesis of Marko Manojlovic is approved: ___________________________ Professor Matthew Clapham ___________________________ Professor James Zachos ___________________________ Professor Noah Finnegan ________________________________ Tyrus Miller Vice Provost and Dean of Graduate Studies i ii Table of Contents Abstract . iv Acknowledgments . v Introduction . 1 Methods . 5 Results . 10 Discussion . 16 Conclusion . 19 Figures . 21 References . 47 iii Marko Manojlovic The Role of Substrate Preference in Mesozoic Brachiopod Decline Abstract Brachiopods dominated the seafloor from the Ordovician to the Permian as one of the primary members of the Paleozoic fauna. Despite the devastating effects of the Permian-Triassic extinction, the group mounted a successful recovery during the Triassic and Jurassic, which was followed by their final decline. One proposed cause of this decline is the large increase in bioturbation associated with the Mesozoic Marine Revolution, leading to brachiopods shifting to harder substrates. This hypothesis was explored using occurrence and abundance data downloaded from the Paleobiology Database, with carbonate lithologies serving as a proxy for hard substrates and siliciclastics as a proxy for soft substrates. Brachiopods were more common on carbonate substrates in the Mesozoic which suggests a shift to harder substrates due to rapidly increasing bioturbation during the era. The resulting restriction to harder substrates is a contributor to the Mesozoic decline of brachiopods. Though increasing bioturbation has been previously proposed as a cause of brachiopod decline, this study provides additional quantitative support for this hypothesis. -
Permophiles International Commission on Stratigraphy
Permophiles International Commission on Stratigraphy Newsletter of the Subcommission on Permian Stratigraphy Number 66 Supplement 1 ISSN 1684 – 5927 August 2018 Permophiles Issue #66 Supplement 1 8th INTERNATIONAL BRACHIOPOD CONGRESS Brachiopods in a changing planet: from the past to the future Milano 11-14 September 2018 GENERAL CHAIRS Lucia Angiolini, Università di Milano, Italy Renato Posenato, Università di Ferrara, Italy ORGANIZING COMMITTEE Chair: Gaia Crippa, Università di Milano, Italy Valentina Brandolese, Università di Ferrara, Italy Claudio Garbelli, Nanjing Institute of Geology and Palaeontology, China Daniela Henkel, GEOMAR Helmholtz Centre for Ocean Research Kiel, Germany Marco Romanin, Polish Academy of Science, Warsaw, Poland Facheng Ye, Università di Milano, Italy SCIENTIFIC COMMITTEE Fernando Álvarez Martínez, Universidad de Oviedo, Spain Lucia Angiolini, Università di Milano, Italy Uwe Brand, Brock University, Canada Sandra J. Carlson, University of California, Davis, United States Maggie Cusack, University of Stirling, United Kingdom Anton Eisenhauer, GEOMAR Helmholtz Centre for Ocean Research Kiel, Germany David A.T. Harper, Durham University, United Kingdom Lars Holmer, Uppsala University, Sweden Fernando Garcia Joral, Complutense University of Madrid, Spain Carsten Lüter, Museum für Naturkunde, Berlin, Germany Alberto Pérez-Huerta, University of Alabama, United States Renato Posenato, Università di Ferrara, Italy Shuzhong Shen, Nanjing Institute of Geology and Palaeontology, China 1 Permophiles Issue #66 Supplement -
Resilience of Long-Lived Mediterranean Gorgonians in a Changing World: Insights from Life History Theory and Quantitative Ecology
Resilience of Long-lived Mediterranean Gorgonians in a Changing World: Insights from Life History Theory and Quantitative Ecology Ignasi Montero Serra Aquesta tesi doctoral està subjecta a la llicència Reconeixement 3.0. Espanya de Creative Commons. Esta tesis doctoral está sujeta a la licencia Reconocimiento 3.0. España de Creative Commons. This doctoral thesis is licensed under the Creative Commons Attribution 3.0. Spain License. Departament de Biologia Evolutiva, Ecologia i Ciències Ambientals Doctorat en Ecologia, Ciències Ambientals i Fisiologia Vegetal Resilience of Long-lived Mediterranean Gorgonians in a Changing World: Insights from Life History Theory and Quantitative Ecology Memòria presentada per Ignasi Montero Serra per optar al Grau de Doctor per la Universitat de Barcelona Ignasi Montero Serra Departament de Biologia Evolutiva, Ecologia i Ciències Ambientals Universitat de Barcelona Maig de 2018 Adivsor: Adivsor: Dra. Cristina Linares Prats Dr. Joaquim Garrabou Universitat de Barcelona Institut de Ciències del Mar (ICM-CSIC) A todas las que sueñan con un mundo mejor. A Latinoamérica. A Asun y Carlos. AGRADECIMIENTOS Echando la vista a atrás reconozco que, pese al estrés del día a día, este ha sido un largo camino de aprendizaje plagado de momentos buenos y alegrías. También ha habido momentos más difíciles, en los cuáles te enfrentas de cara a tus propias limitaciones, pero que te empujan a desarrollar nuevas capacidades y crecer. Cierro esta etapa agradeciendo a toda la gente que la ha hecho posible, a las oportunidades recibidas, a las enseñanzas de l@s grandes científic@s que me han hecho vibrar en este mundo, al apoyo en los momentos más complicados, a las que me alegraron el día a día, a las que hacen que crea más en mí mismo y, sobre todo, a la gente buena que lucha para hacer de este mundo un lugar mejor y más justo. -
Sepkoski, J.J. 1992. Compendium of Fossil Marine Animal Families
MILWAUKEE PUBLIC MUSEUM Contributions . In BIOLOGY and GEOLOGY Number 83 March 1,1992 A Compendium of Fossil Marine Animal Families 2nd edition J. John Sepkoski, Jr. MILWAUKEE PUBLIC MUSEUM Contributions . In BIOLOGY and GEOLOGY Number 83 March 1,1992 A Compendium of Fossil Marine Animal Families 2nd edition J. John Sepkoski, Jr. Department of the Geophysical Sciences University of Chicago Chicago, Illinois 60637 Milwaukee Public Museum Contributions in Biology and Geology Rodney Watkins, Editor (Reviewer for this paper was P.M. Sheehan) This publication is priced at $25.00 and may be obtained by writing to the Museum Gift Shop, Milwaukee Public Museum, 800 West Wells Street, Milwaukee, WI 53233. Orders must also include $3.00 for shipping and handling ($4.00 for foreign destinations) and must be accompanied by money order or check drawn on U.S. bank. Money orders or checks should be made payable to the Milwaukee Public Museum. Wisconsin residents please add 5% sales tax. In addition, a diskette in ASCII format (DOS) containing the data in this publication is priced at $25.00. Diskettes should be ordered from the Geology Section, Milwaukee Public Museum, 800 West Wells Street, Milwaukee, WI 53233. Specify 3Y. inch or 5Y. inch diskette size when ordering. Checks or money orders for diskettes should be made payable to "GeologySection, Milwaukee Public Museum," and fees for shipping and handling included as stated above. Profits support the research effort of the GeologySection. ISBN 0-89326-168-8 ©1992Milwaukee Public Museum Sponsored by Milwaukee County Contents Abstract ....... 1 Introduction.. ... 2 Stratigraphic codes. 8 The Compendium 14 Actinopoda. -
Carbonate Production by Two New Zealand Serpulids
Carbonate production by two New Zealand serpulids Skeletal allometry, mineralogy, growth and calcification of Galeolaria hystrix and Spirobranchus cariniferus (Polychaeta: Serpulidae), southern New Zealand Marc Andri Riedi A thesis submitted in partial fulfilment of the degree of Master of Science at the University of Otago, Dunedin, New Zealand February 2012 Science is a wonderful thing if one does not have to earn one's living at it Albert Einstein Abstract This study investigates the skeletal allometry, mineralogy, growth and calcification of two New Zealand serpulids, Galeolaria hystrix and Spirobranchus cariniferus. Tube allometry (length, diameter, wall thickness, carbonate weight) was studied for G. hystrix from Otago Harbour, Doubtful Sound and Big Glory Bay, Stewart Island and S. cariniferus from Otago Harbour and Doubtful Sound. The tubes length-to-weight and diameter-to-weight relationships are shown to have highest correlation coefficients (at least 0.92), allowing calculation of the carbonate weight of serpulid tubes simply by analysing photographs without the need of collecting and killing the animals. Both G. hystrix and S. cariniferus tubes in New Zealand are made of high-Mg calcite (9.5 & 10.8 wt% MgCO3 respectively) with little (max. of 2 wt% for G. hystrix and 12 wt% for S. cariniferus) or no aragonite. Differences in tube mineralogy among environments suggest an environmental control superimposing the more important genetic control of serpulid mineral precipitation. Opercula of both serpulids show different mineralogy from the tubes, being completely high-Mg calcite (~15 wt% MgCO3) for G. hystrix and almost completely aragonite for S. cariniferus. Perhaps the serpulids secrete these more durable opercula to contend with the high-energy environment in the intertidal (S. -
Oceanography Marine Biology
OCEANOGRAPHY and MARINE BIOLOGY AN ANNUAL REVIEW Volume 39 Editors R. N. Gibson and Margaret Barnes The Dunstaffnage Marine Laboratory Oban, Argyll, Scotland R. 1. A. Atkinson University Marine Biological Station Millport, Isle ofCumbrae, Scotland Founded by Harold Barnes Oceanography and Marine Biology: an Annual Review 20tll, 39, 1 ~~101 R. N. Gibson. Margaret Barnes and R. J. A. Atkinson, Editors Taylor & Francis LIFE-HISTORY PATTERNS IN SERPULIMORPH POLYCHAETES: ECOLOGICAL AND EVOLUTIONARY PERSPECTIVES 1 2 3 ELENA K. KUPRIYANOVA , EIJIROH NISHI , HARRY A. TEN HOVE & ALEXANDER V. RZHAVSKy4 I School ofBiological Sciences, Flinders University, GPO Box 2100, Adelaide 5001, Australia e-mail: [email protected] (the corresponding author) 2 Manazuru Marine Laboratory for Science Education, Yokohama National University, Iwa, Manazuru, Kanagawa 259-0202, Japan 3 Instituut voor Biodiversiteit en Ecosysteem Dynamica/Zoologiscli Museum, Universiteit van Amsterdam, Mauritskade 61, NL-1090 GT Amsterdam, The Netherlands 4 A. N. Severtsov Institute ofEcology and Evolution ofthe Russian Academy ofSciences, Lozinski} Prospekt 33, Moscow, 117071, Russia Abstract The paper summarises information on the life history of tubeworms (Serpulidae and Spirorbidae). Topics reviewed are sexuality patterns, asexual reproduction, gamete attributes, fecundity, spawning and fertilisation, larval development and morphology, larval ecology and behaviour (including larval swimming, feeding, photoresponse, and defences), brooding, settle ment and metamorphosis, longevity and mortality. Gonochorism, simultaneous and sequential hermaphroditism are found in the group, the last pattern being apparently under-reported. Asexual reproduction commonly leads to the formation ofcolonies. The egg size range is 40-200 11m in serpulids and 80--230 11m in spirorbids. The sperms with spherical and with elongated heads correspond, respectively, to broadcasting and brooding. -
Ecology of Inarticulated Brachiopods
ECOLOGY OF INARTICULATED BRACHIOPODS CHRISTIAN C. EMIG [Centre d’Océanologie de Marseille] INTRODUCTION need to be analyzed carefully at the popula- tion level before using them to interpret spe- Living inarticulated brachiopods are a cies and genera. highly diversified group. All are marine, with Assemblages with lingulides are routinely most species extending from the littoral wa- interpreted as indicating intertidal, brackish, ters to the bathyal zone. Only one species and warm conditions, but the evidence for reaches abyssal depths, and none is restricted such assumptions is mainly anecdotal. In to the intertidal zone. Among the living fact, formation of lingulide fossil beds gen- brachiopods, the lingulides, which have been erally occurred during drastic to catastrophic most extensively studied, are the only well- ecological changes. known group. Both living lingulide genera, Lingula and BEHAVIOR Glottidia, are the sole extant representatives INFAUNAL PATTERN: LINGULIDAE of a Paleozoic inarticulated group that have evolved an infaunal habit. They have a range Burrows of morphological, physiological, and behav- Lingulides live in a vertical burrow in a ioral features that have adapted them for an soft substrate. Their burrow has two parts endobiont mode of life that has remained (Fig. 407): the upper part, oval in section, remarkably constant at least since the early about two-thirds of the total length of the Paleozoic. The lingulide group shares many burrow, in which the shell moves along a features that are characteristic of this mode single plane, and the cylindrical lower part in of life including a shell shape that is oblong which only the pedicle moves (EMIG, 1981b, oval or rectangular in outline with straight, 1982). -
LIST of AQUATIC ALIEN SPECIES of the IBERIAN PENINSULA (2020) Updated List of Aquatic Alien Species Introduced and Established in Iberian Inland Waters
Red-eared slider (Trachemys scripta) © Javier Murcia Requena LIST OF AQUATIC ALIEN SPECIES OF THE IBERIAN PENINSULA (2020) Updated list of aquatic alien species introduced and established in Iberian inland waters Authors Oliva-Paterna F.J., Ribeiro F., Miranda R., Anastácio P.M., García-Murillo P., Cobo F., Gallardo B., García-Berthou E., Boix D., Medina L., Morcillo F., Oscoz J., Guillén A., Aguiar F., Almeida D., Arias A., Ayres C., Banha F., Barca S., Biurrun I., Cabezas M.P., Calero S., Campos J.A., Capdevila-Argüelles L., Capinha C., Carapeto A., Casals F., Chainho P., Cirujano S., Clavero M., Cuesta J.A., Del Toro V., Encarnação J.P., Fernández-Delgado C., Franco J., García-Meseguer A.J., Guareschi S., Guerrero A., Hermoso V., Machordom A., Martelo J., Mellado-Díaz A., Moreno J.C., Oficialdegui F.J., Olivo del Amo R., Otero J.C., Perdices A., Pou-Rovira Q., Rodríguez-Merino A., Ros M., Sánchez-Gullón E., Sánchez M.I., Sánchez-Fernández D., Sánchez-González J.R., Soriano O., Teodósio M.A., Torralva M., Vieira-Lanero R., Zamora-López, A. & Zamora-Marín J.M. LIFE INVASAQUA – TECHNICAL REPORT LIFE INVASAQUA – TECHNICAL REPORT Pumpkinseed (Lepomis gibbosus) © Bernard Dupont.. CC-BY-SA-2.0 5 LIST OF AQUATIC ALIEN SPECIES OF THE IBERIAN PENINSULA (2020) Updated list of aquatic alien species introduced and established in Iberian inland waters LIFE INVASAQUA - Aquatic Invasive Alien Species of Freshwater and Estuarine Systems: Awareness and Prevention in the Iberian Peninsula. LIFE17 GIE/ES/000515 This publication is a Technical report by the European Project LIFE INVASAQUA (LIFE17 GIE/ES/000515). -
Polychaeta) from Australia
AUSTRALIAN MUSEUM SCIENTIFIC PUBLICATIONS Dew, Barbara, 1959. Serpulidae (Polychaeta) from Australia. Records of the Australian Museum 25(2): 19–56. [1 September 1959]. doi:10.3853/j.0067-1975.25.1959.654 ISSN 0067-1975 Published by the Australian Museum, Sydney nature culture discover Australian Museum science is freely accessible online at http://publications.australianmuseum.net.au 6 College Street, Sydney NSW 2010, Australia VOL. XXV, No. 2 SYDNEY, 1st September, 1959 RECORDS of The _Australian Museum (World List abbreviation: Rec. Aust. Mus.) Printed by order of the Trustees Edited by the Director, J. W. EVANS, Sc.D. Serpulidae (Polychaeta) frOm Australia By BARBARA DEW School of Public Health and Tropical Medicine Pages 19-56 Figs. 1-21 Registered at the General Post Office, Sydney, for transmission by post as a periodical *(-)28:32 0 0 ~. 110 120 1300 1400 1500 c;r., N 00 w T I MOR SEA I GRENVILLE - BAY t ISLES NORTHERN !2o°f-1-+-- 20° TERRITORY OUEENSLAND .~~~;~E~e~Tis "1] J> Z n « WESTERN w n U STRALIA o SOU T H EVANS HO 30°f-1-+---- --f~--.-.--.. -- A U S T R A _L_I_A___ "- ____ 30° NEW SOUTH WALES] o NORAH HEA IZ n ,« I . ~':}tPT JACKSON rn BOTAN;L~/I:'9PT HACKING J> Z I~ SD ULLADULL ., I ! J I ,I _____--<,40° TI-·~--- I I I 1100 Izeo 1300 1400 R.B. Fig 1: Map of Australia, showing localities mentioned in text. 19 SERPULIDAE (POLYCHAETA) FROM AUSTRALIA By BARRARA DEW (Figs. 1-21) Manuscript. Received 30.9.58 INTRODUCTION This study was part of the marine fouling programme (Allen and Wood, 1950) of the C.S.I.R.O.