Multiple-Locus Heterozygosity and the Physiological Energetics of Growth in the Coot Clam, Mulinia Lateralis, from a Natural Population
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Energy Metabolism in the Tropical Abalone, Haliotis Asinina Linné: Comparisons with Temperate Abalone Species ⁎ J
Journal of Experimental Marine Biology and Ecology 342 (2007) 213–225 www.elsevier.com/locate/jembe Energy metabolism in the tropical abalone, Haliotis asinina Linné: Comparisons with temperate abalone species ⁎ J. Baldwin a, , J.P. Elias a, R.M.G. Wells b, D.A. Donovan c a School of Biological Sciences, Monash University, Clayton, Victoria 3800, Australia b School of Biological Sciences, The University of Auckland, Private Bag 92019, Auckland, New Zealand c Department of Biology, MS 9160, Western Washington University, Bellingham, WA 98225, USA Received 15 March 2006; received in revised form 14 July 2006; accepted 12 September 2006 Abstract The abalone, Haliotis asinina, is a large, highly active tropical abalone that feeds at night on shallow coral reefs where oxygen levels of the water may be low and the animals can be exposed to air. It is capable of more prolonged and rapid exercise than has been reported for temperate abalone. These unusual behaviours raised the question of whether H. asinina possesses enhanced capacities for aerobic or anaerobic metabolism. The blood oxygen transport system of H. asinina resembles that of temperate abalone in terms of a large hemolymph volume, similar hemocyanin concentrations, and in most hemocyanin oxygen binding properties; however, absence of a Root effect appears confined to hemocyanin from H. asinina and may assist oxygen uptake when hemolymph pH falls during exercise or environmental hypoxia. During exposure to air, H. asinina reduces oxygen uptake by at least 20-fold relative to animals at rest in aerated seawater, and there is no significant ATP production from anaerobic glycolysis or phosphagen hydrolysis in the foot or adductor muscles. -
Metabolic Responses of the Estuarine Gastropod Thais Haemastoma to Hypoxia (Energy Charge, Opine Dehydrogenase,Survival, Adaptation, Respiration)
Louisiana State University LSU Digital Commons LSU Historical Dissertations and Theses Graduate School 1985 Metabolic Responses of the Estuarine Gastropod Thais Haemastoma to Hypoxia (Energy Charge, Opine Dehydrogenase,survival, Adaptation, Respiration). Martin A. Kapper Louisiana State University and Agricultural & Mechanical College Follow this and additional works at: https://digitalcommons.lsu.edu/gradschool_disstheses Recommended Citation Kapper, Martin A., "Metabolic Responses of the Estuarine Gastropod Thais Haemastoma to Hypoxia (Energy Charge, Opine Dehydrogenase,survival, Adaptation, Respiration)." (1985). LSU Historical Dissertations and Theses. 4095. https://digitalcommons.lsu.edu/gradschool_disstheses/4095 This Dissertation is brought to you for free and open access by the Graduate School at LSU Digital Commons. It has been accepted for inclusion in LSU Historical Dissertations and Theses by an authorized administrator of LSU Digital Commons. For more information, please contact [email protected]. INFORMATION TO USERS This reproduction was made from a copy of a document sent to us for microfilming. While the most advanced technology has been used to photograph and reproduce this document, the quality of the reproduction is heavily dependent upon the quality of the material submitted. The following explanation of techniques is provided to help clarify markings or notations which may appear on this reproduction. 1.The sign or “target" for pages apparently lacking from the document photographed is “Missing Page(s)”. If it was possible to obtain the missing page(s) or section, they are spliced into the film along with adjacent pages. This may have necessitated cutting through an image and duplicating adjacent pages to assure complete continuity. 2. When an image on the film is obliterated with a round black mark, it is an indication of either blurred copy because of movement during exposure, duplicate copy, or copyrighted materials that should not have been filmed. -
Amino Acid Metabolism in Ribbed Mussel Gill Tisue During Hypersmotic Stress: Role of Transaminases and Pyruvate Dehydrogenase Kennedy T
Iowa State University Capstones, Theses and Retrospective Theses and Dissertations Dissertations 1985 Amino acid metabolism in ribbed mussel gill tisue during hypersmotic stress: role of transaminases and pyruvate dehydrogenase Kennedy T. Paynter Jr. Iowa State University Follow this and additional works at: https://lib.dr.iastate.edu/rtd Part of the Zoology Commons Recommended Citation Paynter, Kennedy T. Jr., "Amino acid metabolism in ribbed mussel gill tisue during hypersmotic stress: role of transaminases and pyruvate dehydrogenase " (1985). Retrospective Theses and Dissertations. 12096. https://lib.dr.iastate.edu/rtd/12096 This Dissertation is brought to you for free and open access by the Iowa State University Capstones, Theses and Dissertations at Iowa State University Digital Repository. It has been accepted for inclusion in Retrospective Theses and Dissertations by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. INFORMATION TO USERS This reproduction was made from a copy of a document sent to us for microfilming. While the most advanced technology has been used to photograph and reproduce this document, the quality of the reproduction is heavily dependent upon the quality of the material submitted. The following explanation of techniques is provided to help clarify markings or notations which may appear on this reproduction. 1.The sign or "target" for pages apparently lacking from the document photographed is "Missing Page(s)". If it was possible to obtain the missing page(s) or section, they are spliced into the film along with adjacent pages. This may have necessitated cutting through an image and duplicating adjacent pages to assure complete continuity. -
Energy Metabolism in Eukaryotes Biochemistry and Evolution Of
Biochemistry and Evolution of Anaerobic Downloaded from Energy Metabolism in Eukaryotes Miklós Müller, Marek Mentel, Jaap J. van Hellemond, Katrin Henze, Christian Woehle, Sven B. Gould, Re-Young Yu, Mark van der Giezen, Aloysius G. M. Tielens and William F. Martin Microbiol. Mol. Biol. Rev. 2012, 76(2):444. DOI: http://mmbr.asm.org/ 10.1128/MMBR.05024-11. Updated information and services can be found at: http://mmbr.asm.org/content/76/2/444 on June 18, 2012 by UNIVERSITAETS- UND LANDESBIBLIOTHEK DUESSELDORF These include: SUPPLEMENTAL MATERIAL http://mmbr.asm.org/content/suppl/2012/05/23/76.2.444.DC1.ht ml REFERENCES This article cites 571 articles, 205 of which can be accessed free at: http://mmbr.asm.org/content/76/2/444#ref-list-1 CONTENT ALERTS Receive: RSS Feeds, eTOCs, free email alerts (when new articles cite this article), more» Information about commercial reprint orders: http://journals.asm.org/site/misc/reprints.xhtml To subscribe to to another ASM Journal go to: http://journals.asm.org/site/subscriptions/ Biochemistry and Evolution of Anaerobic Energy Metabolism in Eukaryotes Downloaded from Miklós Müller,a Marek Mentel,b Jaap J. van Hellemond,c Katrin Henze,d Christian Woehle,d Sven B. Gould,d Re-Young Yu,d Mark van der Giezen,e Aloysius G. M. Tielens,c and William F. Martind The Rockefeller University, New York, New York, USAa; Department of Biochemistry, Faculty of Natural Sciences, Comenius University, Bratislava, Slovakiab; Department of Medical Microbiology and Infectious Diseases, Erasmus University Medical Center, -
Ornithine Cyclodeaminase/μ-Crystallin Homolog from The
FEBS Open Bio 4 (2014) 617–626 journal homepage: www.elsevier.com/locate/febsopenbio Ornithine cyclodeaminase/l-crystallin homolog from the hyperthermophilic archaeon Thermococcus litoralis functions as a novel D1-pyrroline-2-carboxylate reductase involved in putative trans-3- hydroxy-L-proline metabolism ⇑ Seiya Watanabe a, , Yuzuru Tozawa b, Yasuo Watanabe a a Faculty of Agriculture, Ehime University, 3-5-7 Tarumi, Matsuyama, Ehime 790-8566, Japan b Proteo-Science Center, Ehime University, 3 Bunkyo-cho, Matsuyama, Ehime 790-8577, Japan article info abstract Article history: L-Ornithine cyclodeaminase (OCD) is involved in L-proline biosynthesis and catalyzes the unique 1 Received 24 April 2014 deaminating cyclization of L-ornithine to L-proline via a D -pyrroline-2-carboxyrate (Pyr2C) inter- Revised 25 June 2014 mediate. Although this pathway functions in only a few bacteria, many archaea possess OCD-like Accepted 7 July 2014 genes (proteins), among which only AF1665 protein (gene) from Archaeoglobus fulgidus has been + characterized as an NAD -dependent L-alanine dehydrogenase (AfAlaDH). However, the physiologi- cal role of OCD-like proteins from archaea has been unclear. Recently, we revealed that Pyr2C reduc- tase, involved in trans-3-hydroxy-L-proline (T3LHyp) metabolism of bacteria, belongs to the OCD Keywords: protein superfamily and catalyzes only the reduction of Pyr2C to L-proline (no OCD activity) [FEBS Ornithine cyclodeaminase D1-pyrroline-2-carboxylate reductase Open Bio (2014) 4, 240–250]. In this study, based on bioinformatics analysis, we assumed that the Molecular evolution OCD-like gene from Thermococcus litoralis DSM 5473 is related to T3LHyp and/or proline metabolism trans-3-Hydroxy-L-proline metabolism (TlLhpI). -
All Enzymes in BRENDA™ the Comprehensive Enzyme Information System
All enzymes in BRENDA™ The Comprehensive Enzyme Information System http://www.brenda-enzymes.org/index.php4?page=information/all_enzymes.php4 1.1.1.1 alcohol dehydrogenase 1.1.1.B1 D-arabitol-phosphate dehydrogenase 1.1.1.2 alcohol dehydrogenase (NADP+) 1.1.1.B3 (S)-specific secondary alcohol dehydrogenase 1.1.1.3 homoserine dehydrogenase 1.1.1.B4 (R)-specific secondary alcohol dehydrogenase 1.1.1.4 (R,R)-butanediol dehydrogenase 1.1.1.5 acetoin dehydrogenase 1.1.1.B5 NADP-retinol dehydrogenase 1.1.1.6 glycerol dehydrogenase 1.1.1.7 propanediol-phosphate dehydrogenase 1.1.1.8 glycerol-3-phosphate dehydrogenase (NAD+) 1.1.1.9 D-xylulose reductase 1.1.1.10 L-xylulose reductase 1.1.1.11 D-arabinitol 4-dehydrogenase 1.1.1.12 L-arabinitol 4-dehydrogenase 1.1.1.13 L-arabinitol 2-dehydrogenase 1.1.1.14 L-iditol 2-dehydrogenase 1.1.1.15 D-iditol 2-dehydrogenase 1.1.1.16 galactitol 2-dehydrogenase 1.1.1.17 mannitol-1-phosphate 5-dehydrogenase 1.1.1.18 inositol 2-dehydrogenase 1.1.1.19 glucuronate reductase 1.1.1.20 glucuronolactone reductase 1.1.1.21 aldehyde reductase 1.1.1.22 UDP-glucose 6-dehydrogenase 1.1.1.23 histidinol dehydrogenase 1.1.1.24 quinate dehydrogenase 1.1.1.25 shikimate dehydrogenase 1.1.1.26 glyoxylate reductase 1.1.1.27 L-lactate dehydrogenase 1.1.1.28 D-lactate dehydrogenase 1.1.1.29 glycerate dehydrogenase 1.1.1.30 3-hydroxybutyrate dehydrogenase 1.1.1.31 3-hydroxyisobutyrate dehydrogenase 1.1.1.32 mevaldate reductase 1.1.1.33 mevaldate reductase (NADPH) 1.1.1.34 hydroxymethylglutaryl-CoA reductase (NADPH) 1.1.1.35 3-hydroxyacyl-CoA -
(12) United States Patent (10) Patent No.: US 9,296,993 B2 Chen Et Al
US009296993B2 (12) United States Patent (10) Patent No.: US 9,296,993 B2 Chen et al. (45) Date of Patent: Mar. 29, 2016 (54) ENGINEERED MINE REDUCTASES AND (56) References Cited METHODS FOR THE REDUCTIVE AMINATION OF KETONE AND AMINE U.S. PATENT DOCUMENTS COMPOUNDS 7,202,070 B2 4/2007 Rozzell, Jr. 7,423, 195 B2 9, 2008 Sticklen et al. (71) Applicant: Codexis, Inc., Redwood City, CA (US) 7,452,704 B2 11/2008 Esaki et al. 2005, 0124040 A1 6/2005 Esaki et al. (72) Inventors: Haibin Chen, Beijing (CN); Steven J. 2006/0205045 A1 9, 2006 Esaki et al. Collier, Concord, MA (US); Jovana 2007/OOO9995 A1 1/2007 Bogosian et al. Nazor, Santa Clara, CA (US); Joly Sukumaran, Singapore (SG); Derek OTHER PUBLICATIONS Smith, Singapore (SG); Jeffrey C. Moore, Westfield, NJ (US); Gregory Abrahamson, M.J., et al., “Development of an Amine Dehydrogenase Hughes, Scotch Plains, NJ (US); Jacob for Synthesis of Chiral Amines.” Angew. Chem. Intl. Ed., 51:3969 Janey, New York, NY (US); Gjalt W. 3972 2012. Huisman, Redwood City, CA (US); Asano, Y, et al., “A New NAD+-Dependent Opine Dehydrogenase Scott J. Novick, Palo Alto, CA (US); from Arthrobacter sp. Strain IC. J. Bacterol. 171 (8):4466-4471 Nicholas J. Agard, San Francisco, CA 1989. Baker, P.J., et al., “A role for quaternary structure in the substrate (US); Oscar Alvizo, Fremont, CA (US); specificity of leucine dehydrogenase.” Structure, 3(7):693-705 Gregory A. Cope, Menlo Park, CA 1995. (US); Wan Lin Yeo, Singapore (SG); Bevan, M., et al., “Structure and transcription of the nopaline Stefanie Ng Minor, Redwood City, CA synthase gene region of T-DNA. -
Supplementary Material (ESI) for Natural Product Reports
Electronic Supplementary Material (ESI) for Natural Product Reports. This journal is © The Royal Society of Chemistry 2014 Supplement to the paper of Alexey A. Lagunin, Rajesh K. Goel, Dinesh Y. Gawande, Priynka Pahwa, Tatyana A. Gloriozova, Alexander V. Dmitriev, Sergey M. Ivanov, Anastassia V. Rudik, Varvara I. Konova, Pavel V. Pogodin, Dmitry S. Druzhilovsky and Vladimir V. Poroikov “Chemo- and bioinformatics resources for in silico drug discovery from medicinal plants beyond their traditional use: a critical review” Contents PASS (Prediction of Activity Spectra for Substances) Approach S-1 Table S1. The lists of 122 known therapeutic effects for 50 analyzed medicinal plants with accuracy of PASS prediction calculated by a leave-one-out cross-validation procedure during the training and number of active compounds in PASS training set S-6 Table S2. The lists of 3,345 mechanisms of action that were predicted by PASS and were used in this study with accuracy of PASS prediction calculated by a leave-one-out cross-validation procedure during the training and number of active compounds in PASS training set S-9 Table S3. Comparison of direct PASS prediction results of known effects for phytoconstituents of 50 TIM plants with prediction of known effects through “mechanism-effect” and “target-pathway- effect” relationships from PharmaExpert S-79 S-1 PASS (Prediction of Activity Spectra for Substances) Approach PASS provides simultaneous predictions of many types of biological activity (activity spectrum) based on the structure of drug-like compounds. The approach used in PASS is based on the suggestion that biological activity of any drug-like compound is a function of its structure. -
Anaerobic Pathways in the Porifera: Strombine Dehydrogenase, an Opine Dehydrogenase, from the Sponge Suberites Domuncula
Anaerobic pathways in the Porifera: Strombine dehydrogenase, an opine dehydrogenase, from the sponge Suberites domuncula Dissertation zur Erlangung des Grades Doktor der Naturwissenschaften Am Fachbereich Biologie der Johannes Gutenberg-Universität in Mainz Bruna Pleše geb. in Zagreb (Croatia) Mainz, 2007 Dekan: 1. Berichterstatter: 2. Berichterstatter: Tag der mündlichen Prüfung: Mojoj Baki i Čiki 1 INTRODUCTION .........................................................................................................1 1.1 Sponges (Porifera)................................................................................................1 1.1.1 The origins ...........................................................................................................1 1.1.2 Morphology...........................................................................................................4 1.1.3 Reproduction.........................................................................................................5 1.1.4 Classification.........................................................................................................6 1.1.5 Symbiosis..............................................................................................................7 1.2 Anaerobic pathways............................................................................................10 1.2.1 Evolution of anaerobic pathways........................................................................12 1.2.2 Opines .................................................................................................................14 -
Springer Handbook of Enzymes
Dietmar Schomburg Ida Schomburg (Eds.) Springer Handbook of Enzymes Alphabetical Name Index 1 23 © Springer-Verlag Berlin Heidelberg New York 2010 This work is subject to copyright. All rights reserved, whether in whole or part of the material con- cerned, specifically the right of translation, printing and reprinting, reproduction and storage in data- bases. The publisher cannot assume any legal responsibility for given data. Commercial distribution is only permitted with the publishers written consent. Springer Handbook of Enzymes, Vols. 1–39 + Supplements 1–7, Name Index 2.4.1.60 abequosyltransferase, Vol. 31, p. 468 2.7.1.157 N-acetylgalactosamine kinase, Vol. S2, p. 268 4.2.3.18 abietadiene synthase, Vol. S7,p.276 3.1.6.12 N-acetylgalactosamine-4-sulfatase, Vol. 11, p. 300 1.14.13.93 (+)-abscisic acid 8’-hydroxylase, Vol. S1, p. 602 3.1.6.4 N-acetylgalactosamine-6-sulfatase, Vol. 11, p. 267 1.2.3.14 abscisic-aldehyde oxidase, Vol. S1, p. 176 3.2.1.49 a-N-acetylgalactosaminidase, Vol. 13,p.10 1.2.1.10 acetaldehyde dehydrogenase (acetylating), Vol. 20, 3.2.1.53 b-N-acetylgalactosaminidase, Vol. 13,p.91 p. 115 2.4.99.3 a-N-acetylgalactosaminide a-2,6-sialyltransferase, 3.5.1.63 4-acetamidobutyrate deacetylase, Vol. 14,p.528 Vol. 33,p.335 3.5.1.51 4-acetamidobutyryl-CoA deacetylase, Vol. 14, 2.4.1.147 acetylgalactosaminyl-O-glycosyl-glycoprotein b- p. 482 1,3-N-acetylglucosaminyltransferase, Vol. 32, 3.5.1.29 2-(acetamidomethylene)succinate hydrolase, p. 287 Vol. -
Energy Metabolism in Anaerobic Eukaryotes and Earth's Late Oxygenation
Free Radical Biology and Medicine xxx (xxxx) xxx–xxx Contents lists available at ScienceDirect Free Radical Biology and Medicine journal homepage: www.elsevier.com/locate/freeradbiomed Energy metabolism in anaerobic eukaryotes and Earth's late oxygenation ∗ Verena Zimorskia, Marek Mentelb, Aloysius G.M. Tielensc,d, William F. Martina, a Institute of Molecular Evolution, Heinrich-Heine-University, 40225, Düsseldorf, Germany b Department of Biochemistry, Faculty of Natural Sciences, Comenius University in Bratislava, 851 04, Bratislava, Slovakia c Department of Medical Microbiology and Infectious Diseases, Erasmus Medical Center Rotterdam, The Netherlands d Department of Biochemistry and Cell Biology, Faculty of Veterinary Medicine, Utrecht University, Utrecht, The Netherlands ARTICLE INFO ABSTRACT Keywords: Eukaryotes arose about 1.6 billion years ago, at a time when oxygen levels were still very low on Earth, both in Eukaryote anaerobes the atmosphere and in the ocean. According to newer geochemical data, oxygen rose to approximately its present Hydrogenosomes atmospheric levels very late in evolution, perhaps as late as the origin of land plants (only about 450 million Mitosomes years ago). It is therefore natural that many lineages of eukaryotes harbor, and use, enzymes for oxygen-in- Euglena dependent energy metabolism. This paper provides a concise overview of anaerobic energy metabolism in eu- Chlamydomonas karyotes with a focus on anaerobic energy metabolism in mitochondria. We also address the widespread as- Earth history Great oxidation event sumption that oxygen improves the overall energetic state of a cell. While it is true that ATP yield from glucose or amino acids is increased in the presence of oxygen, it is also true that the synthesis of biomass costs thirteen times more energy per cell in the presence of oxygen than in anoxic conditions. -
(19) United States (12) Patent Application Publication (10) Pub
US 20130244920A1 (19) United States (12) Patent Application Publication (10) Pub. N0.: US 2013/0244920 A1 Lee et al. (43) Pub. Date: Sep. 19, 2013 (54) WATER SOLUBLE COMPOSITIONS (52) US. Cl. INCORPORATING ENZYMES, AND METHOD USPC ......................................... .. 510/392; 264/299 OF MAKING SAME (57) ABSTRACT (76) Inventors: David M. Lee, CroWn Point, IN (US); Jennifer L‘ Sims’ Lowell’ IN (Us) Disclosed herein are Water soluble compositions, such as ?lms, including a mixture of a ?rst Water-soluble resin, an (21) Appl' NO': 13/422’709 enzyme, and an enzyme stabilizer Which comprises a func (22) Filed: Man 16, 2012 tional substrate for the enzyme, methods of making such compositions, and methods of using such compositions, e.g. Publication Classi?cation to make packets containing functional ingredients. The enzymes can include proteases and mixtures of proteases (51) Int. Cl. With other enzymes, and the compositions provide good C11D 3/386 (2006.01) retention of enzyme function following ?lm processing and B29C 39/02 (2006.01) storage. US 2013/0244920 A1 Sep. 19,2013 WATER SOLUBLE COMPOSITIONS preheated to a temperature less than 77° C., optionally in a INCORPORATING ENZYMES, AND METHOD range ofabout 66° C. to about 77° C., or about 74° C.; drying OF MAKING SAME the Water from the cast mixture over a period of less than 24 hours, optionally less than 12 hours, optionally less than 8 FIELD OF THE DISCLOSURE hours, optionally less than 2 hours, optionally less than 1 [0001] The present disclosure relates generally to Water hour, optionally less than 45 minutes, optionally less than 30 soluble ?lms.