Caveolae and Cancer: a New Mechanical Perspective
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Membrane Tension Buffering by Caveolae: a Role in Cancer?
Cancer and Metastasis Reviews (2020) 39:505–517 https://doi.org/10.1007/s10555-020-09899-2 Membrane tension buffering by caveolae: a role in cancer? Vibha Singh1 & Christophe Lamaze1 Published online: 30 May 2020 # Springer Science+Business Media, LLC, part of Springer Nature 2020 Abstract Caveolae are bulb-like invaginations made up of two essential structural proteins, caveolin-1 and cavins, which are abundantly present at the plasma membrane of vertebrate cells. Since their discovery more than 60 years ago, the function of caveolae has been mired in controversy. The last decade has seen the characterization of new caveolae components and regulators together with the discovery of additional cellular functions that have shed new light on these enigmatic structures. Early on, caveolae and/ or caveolin-1 have been involved in the regulation of several parameters associated with cancer progression such as cell migration, metastasis, angiogenesis, or cell growth. These studies have revealed that caveolin-1 and more recently cavin-1 have a dual role with either a negative or a positive effect on most of these parameters. The recent discovery that caveolae can act as mechanosensors has sparked an array of new studies that have addressed the mechanobiology of caveolae in various cellular functions. This review summarizes the current knowledge on caveolae and their role in cancer development through their activity in membrane tension buffering. We propose that the role of caveolae in cancer has to be revisited through their response to the mechanical forces encountered by cancer cells during tumor mass development. Keywords Caveolae . Cancer . Mechanosensing . Mechanotransdcution . Membrane tension . -
In Vivo Mapping of a GPCR Interactome Using Knockin Mice
In vivo mapping of a GPCR interactome using knockin mice Jade Degrandmaisona,b,c,d,e,1, Khaled Abdallahb,c,d,1, Véronique Blaisb,c,d, Samuel Géniera,c,d, Marie-Pier Lalumièrea,c,d, Francis Bergeronb,c,d,e, Catherine M. Cahillf,g,h, Jim Boulterf,g,h, Christine L. Lavoieb,c,d,i, Jean-Luc Parenta,c,d,i,2, and Louis Gendronb,c,d,i,j,k,2 aDépartement de Médecine, Université de Sherbrooke, Sherbrooke, QC J1H 5N4, Canada; bDépartement de Pharmacologie–Physiologie, Université de Sherbrooke, Sherbrooke, QC J1H 5N4, Canada; cFaculté de Médecine et des Sciences de la Santé, Université de Sherbrooke, Sherbrooke, QC J1H 5N4, Canada; dCentre de Recherche du Centre Hospitalier Universitaire de Sherbrooke, Sherbrooke, QC J1H 5N4, Canada; eQuebec Network of Junior Pain Investigators, Sherbrooke, QC J1H 5N4, Canada; fDepartment of Psychiatry and Biobehavioral Sciences, University of California, Los Angeles, CA 90095; gSemel Institute for Neuroscience and Human Behavior, University of California, Los Angeles, CA 90095; hShirley and Stefan Hatos Center for Neuropharmacology, University of California, Los Angeles, CA 90095; iInstitut de Pharmacologie de Sherbrooke, Sherbrooke, QC J1H 5N4, Canada; jDépartement d’Anesthésiologie, Université de Sherbrooke, Sherbrooke, QC J1H 5N4, Canada; and kQuebec Pain Research Network, Sherbrooke, QC J1H 5N4, Canada Edited by Brian K. Kobilka, Stanford University School of Medicine, Stanford, CA, and approved April 9, 2020 (received for review October 16, 2019) With over 30% of current medications targeting this family of attenuates pain hypersensitivities in several chronic pain models proteins, G-protein–coupled receptors (GPCRs) remain invaluable including neuropathic, inflammatory, diabetic, and cancer pain therapeutic targets. -
Human Induced Pluripotent Stem Cell–Derived Podocytes Mature Into Vascularized Glomeruli Upon Experimental Transplantation
BASIC RESEARCH www.jasn.org Human Induced Pluripotent Stem Cell–Derived Podocytes Mature into Vascularized Glomeruli upon Experimental Transplantation † Sazia Sharmin,* Atsuhiro Taguchi,* Yusuke Kaku,* Yasuhiro Yoshimura,* Tomoko Ohmori,* ‡ † ‡ Tetsushi Sakuma, Masashi Mukoyama, Takashi Yamamoto, Hidetake Kurihara,§ and | Ryuichi Nishinakamura* *Department of Kidney Development, Institute of Molecular Embryology and Genetics, and †Department of Nephrology, Faculty of Life Sciences, Kumamoto University, Kumamoto, Japan; ‡Department of Mathematical and Life Sciences, Graduate School of Science, Hiroshima University, Hiroshima, Japan; §Division of Anatomy, Juntendo University School of Medicine, Tokyo, Japan; and |Japan Science and Technology Agency, CREST, Kumamoto, Japan ABSTRACT Glomerular podocytes express proteins, such as nephrin, that constitute the slit diaphragm, thereby contributing to the filtration process in the kidney. Glomerular development has been analyzed mainly in mice, whereas analysis of human kidney development has been minimal because of limited access to embryonic kidneys. We previously reported the induction of three-dimensional primordial glomeruli from human induced pluripotent stem (iPS) cells. Here, using transcription activator–like effector nuclease-mediated homologous recombination, we generated human iPS cell lines that express green fluorescent protein (GFP) in the NPHS1 locus, which encodes nephrin, and we show that GFP expression facilitated accurate visualization of nephrin-positive podocyte formation in -
Supplementary Table 1
Supplementary Table 1. 492 genes are unique to 0 h post-heat timepoint. The name, p-value, fold change, location and family of each gene are indicated. Genes were filtered for an absolute value log2 ration 1.5 and a significance value of p ≤ 0.05. Symbol p-value Log Gene Name Location Family Ratio ABCA13 1.87E-02 3.292 ATP-binding cassette, sub-family unknown transporter A (ABC1), member 13 ABCB1 1.93E-02 −1.819 ATP-binding cassette, sub-family Plasma transporter B (MDR/TAP), member 1 Membrane ABCC3 2.83E-02 2.016 ATP-binding cassette, sub-family Plasma transporter C (CFTR/MRP), member 3 Membrane ABHD6 7.79E-03 −2.717 abhydrolase domain containing 6 Cytoplasm enzyme ACAT1 4.10E-02 3.009 acetyl-CoA acetyltransferase 1 Cytoplasm enzyme ACBD4 2.66E-03 1.722 acyl-CoA binding domain unknown other containing 4 ACSL5 1.86E-02 −2.876 acyl-CoA synthetase long-chain Cytoplasm enzyme family member 5 ADAM23 3.33E-02 −3.008 ADAM metallopeptidase domain Plasma peptidase 23 Membrane ADAM29 5.58E-03 3.463 ADAM metallopeptidase domain Plasma peptidase 29 Membrane ADAMTS17 2.67E-04 3.051 ADAM metallopeptidase with Extracellular other thrombospondin type 1 motif, 17 Space ADCYAP1R1 1.20E-02 1.848 adenylate cyclase activating Plasma G-protein polypeptide 1 (pituitary) receptor Membrane coupled type I receptor ADH6 (includes 4.02E-02 −1.845 alcohol dehydrogenase 6 (class Cytoplasm enzyme EG:130) V) AHSA2 1.54E-04 −1.6 AHA1, activator of heat shock unknown other 90kDa protein ATPase homolog 2 (yeast) AK5 3.32E-02 1.658 adenylate kinase 5 Cytoplasm kinase AK7 -
A Trafficome-Wide Rnai Screen Reveals Deployment of Early and Late Secretory Host Proteins and the Entire Late Endo-/Lysosomal V
bioRxiv preprint doi: https://doi.org/10.1101/848549; this version posted November 19, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 A trafficome-wide RNAi screen reveals deployment of early and late 2 secretory host proteins and the entire late endo-/lysosomal vesicle fusion 3 machinery by intracellular Salmonella 4 5 Alexander Kehl1,4, Vera Göser1, Tatjana Reuter1, Viktoria Liss1, Maximilian Franke1, 6 Christopher John1, Christian P. Richter2, Jörg Deiwick1 and Michael Hensel1, 7 8 1Division of Microbiology, University of Osnabrück, Osnabrück, Germany; 2Division of Biophysics, University 9 of Osnabrück, Osnabrück, Germany, 3CellNanOs – Center for Cellular Nanoanalytics, Fachbereich 10 Biologie/Chemie, Universität Osnabrück, Osnabrück, Germany; 4current address: Institute for Hygiene, 11 University of Münster, Münster, Germany 12 13 Running title: Host factors for SIF formation 14 Keywords: siRNA knockdown, live cell imaging, Salmonella-containing vacuole, Salmonella- 15 induced filaments 16 17 Address for correspondence: 18 Alexander Kehl 19 Institute for Hygiene 20 University of Münster 21 Robert-Koch-Str. 4148149 Münster, Germany 22 Tel.: +49(0)251/83-55233 23 E-mail: [email protected] 24 25 or bioRxiv preprint doi: https://doi.org/10.1101/848549; this version posted November 19, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. -
Development of an Infectious Clone System to Study the Life Cycle of Hazara Virus
Development of an Infectious Clone System to Study the Life Cycle of Hazara Virus Jack Fuller Submitted in accordance with the requirements for the degree of Doctor of Philosophy The University of Leeds Faculty of Biological Sciences July 2020 i The candidate confirms that the work submitted is his own and that appropriate credit has been given where reference has been made to the work of others. This copy has been supplied on the understanding that it is copyright material and that no quotation from the thesis may be published without proper acknowledgement. © 2020 The University of Leeds and Jack Fuller ii Acknowledgements I would like to thank my supervisors, John, Jamel and Roger for their endless support and fresh ideas throughout my PhD. A special thanks go to John for always providing enthusiasm and encouragement, especially during the tougher times of the project! I would also like to thank everyone in 8.61, not only for making my time at Leeds enjoyable, but for helping me develop as a scientist through useful critique and discussion. A special thanks goes to Francis Hopkins, for welcoming me into the Barr group and providing a constant supply of humour and to Ellie Todd, for listening to my endless whines and gripes, and for providing welcome distractions in the form of her PowerPoint artwork. Outside of the lab, my mum deserves a special mention for always being the voice of reason and support at the end of the phone, but also for pushing me to succeed throughout my entire education. I have no doubts I would not be in the position I am now without her! Finally, a huge thanks to my partner Hannah, who has been there to support me through all the highs and lows of my PhD, and has sacrificed many weekend trips to allow me to finish experiments and to tend to my viruses! iii Abstract Crimean-Congo hemorrhagic fever orthonairovirus (CCHFV) is a negative sense single stranded RNA virus, capable of causing fatal hemorrhagic fever in humans. -
Downregulation of Carnitine Acyl-Carnitine Translocase by Mirnas
Page 1 of 288 Diabetes 1 Downregulation of Carnitine acyl-carnitine translocase by miRNAs 132 and 212 amplifies glucose-stimulated insulin secretion Mufaddal S. Soni1, Mary E. Rabaglia1, Sushant Bhatnagar1, Jin Shang2, Olga Ilkayeva3, Randall Mynatt4, Yun-Ping Zhou2, Eric E. Schadt6, Nancy A.Thornberry2, Deborah M. Muoio5, Mark P. Keller1 and Alan D. Attie1 From the 1Department of Biochemistry, University of Wisconsin, Madison, Wisconsin; 2Department of Metabolic Disorders-Diabetes, Merck Research Laboratories, Rahway, New Jersey; 3Sarah W. Stedman Nutrition and Metabolism Center, Duke Institute of Molecular Physiology, 5Departments of Medicine and Pharmacology and Cancer Biology, Durham, North Carolina. 4Pennington Biomedical Research Center, Louisiana State University system, Baton Rouge, Louisiana; 6Institute for Genomics and Multiscale Biology, Mount Sinai School of Medicine, New York, New York. Corresponding author Alan D. Attie, 543A Biochemistry Addition, 433 Babcock Drive, Department of Biochemistry, University of Wisconsin-Madison, Madison, Wisconsin, (608) 262-1372 (Ph), (608) 263-9608 (fax), [email protected]. Running Title: Fatty acyl-carnitines enhance insulin secretion Abstract word count: 163 Main text Word count: 3960 Number of tables: 0 Number of figures: 5 Diabetes Publish Ahead of Print, published online June 26, 2014 Diabetes Page 2 of 288 2 ABSTRACT We previously demonstrated that micro-RNAs 132 and 212 are differentially upregulated in response to obesity in two mouse strains that differ in their susceptibility to obesity-induced diabetes. Here we show the overexpression of micro-RNAs 132 and 212 enhances insulin secretion (IS) in response to glucose and other secretagogues including non-fuel stimuli. We determined that carnitine acyl-carnitine translocase (CACT, Slc25a20) is a direct target of these miRNAs. -
Kidney V-Atpase-Rich Cell Proteome Database
A comprehensive list of the proteins that are expressed in V-ATPase-rich cells harvested from the kidneys based on the isolation by enzymatic digestion and fluorescence-activated cell sorting (FACS) from transgenic B1-EGFP mice, which express EGFP under the control of the promoter of the V-ATPase-B1 subunit. In these mice, type A and B intercalated cells and connecting segment principal cells of the kidney express EGFP. The protein identification was performed by LC-MS/MS using an LTQ tandem mass spectrometer (Thermo Fisher Scientific). For questions or comments please contact Sylvie Breton ([email protected]) or Mark A. Knepper ([email protected]). -
Sumoylation of EHD3 Modulates Tubulation of the Endocytic Recycling Compartment
RESEARCH ARTICLE SUMOylation of EHD3 Modulates Tubulation of the Endocytic Recycling Compartment Or Cabasso☯, Olga Pekar☯¤, Mia Horowitz* Department of Cell Research and Immunology, Tel Aviv University, Ramat Aviv, Israel ☯ These authors contributed equally to this work. ¤ Current address: Skirball Institute of Biomolecular Medicine, New York University, New York New York, United States of America * [email protected] Abstract Endocytosis defines the entry of molecules or macromolecules through the plasma mem- brane as well as membrane trafficking in the cell. It depends on a large number of proteins that undergo protein-protein and protein-phospholipid interactions. EH Domain containing (EHDs) proteins formulate a family, whose members participate in different stages of endo- cytosis. Of the four mammalian EHDs (EHD1-EHD4) EHD1 and EHD3 control traffic to the endocytic recycling compartment (ERC) and from the ERC to the plasma membrane, while EHD2 modulates internalization. Recently, we have shown that EHD2 undergoes SUMOylation, which facilitates its exit from the nucleus, where it serves as a co-repressor. OPEN ACCESS In the present study, we tested whether EHD3 undergoes SUMOylation and what is its role Citation: Cabasso O, Pekar O, Horowitz M (2015) in endocytic recycling. We show, both in-vitro and in cell culture, that EHD3 undergoes SUMOylation of EHD3 Modulates Tubulation of the Endocytic Recycling Compartment. PLoS ONE 10(7): SUMOylation. Localization of EHD3 to the tubular structures of the ERC depends on its e0134053. doi:10.1371/journal.pone.0134053 SUMOylation on lysines 315 and 511. Absence of SUMOylation of EHD3 has no effect on Editor: Xiaochen Wang, National Institute of its dimerization, an important factor in membrane localization of EHD3, but has a dominant Biological Sciences, Beijing, CHINA negative effect on its appearance in tubular ERC structures. -
Retrograde Trafficking of AB5 Toxins: Mechanisms to Therapeutics
J Mol Med DOI 10.1007/s00109-013-1048-7 REVIEW Retrograde trafficking of AB5 toxins: mechanisms to therapeutics Somshuvra Mukhopadhyay & Adam D. Linstedt Received: 1 April 2013 /Revised: 23 April 2013 /Accepted: 24 April 2013 # Springer-Verlag Berlin Heidelberg 2013 Abstract Bacterial AB5 toxins are a clinically relevant class and epidemic diarrhea; and pertussis toxin (PTx), which is the of exotoxins that include several well-known members such causative agent for whooping cough [1, 2]. Each year, infec- as Shiga, cholera, and pertussis toxins. Infections with toxin- tions with these toxin-producing bacteria affect millions of producing bacteria cause devastating human diseases that individuals and cause more than a million deaths [1]. affect millions of individuals each year and have no definitive AB5 toxins are so-called because they are formed by the medical treatment. The molecular targets of AB5 toxins reside association of a single A subunit with a pentameric B subunit in the cytosol of infected cells, and the toxins reach the cytosol (Fig. 1)[1, 2]. The toxins exert their cytotoxic effect by by trafficking through the retrograde membrane transport altering the activity of specific molecular targets in the cytosol pathway that avoids degradative late endosomes and lyso- of infected cells. STx blocks protein synthesis by removing a somes. Focusing on Shiga toxin as the archetype member, single adenine residue from the 28S ribosomal RNA, and CTx we review recent advances in understanding the molecular and PTx increase cAMP levels by ADP-ribosylating the Gsα mechanisms involved in the retrograde trafficking of AB5 or Giα components of heterotrimeric G proteins, respectively toxins and highlight how these basic science advances are [1, 2]. -
Transcriptome-Wide Analysis of CXCR5 Deficient Retinal Pigment
Article Transcriptome‐wide analysis of CXCR5 deficient retinal pigment epithelial (RPE) cells reveals molecular signature of RPE homeostasis Supplementary data Madhu Sudhana Saddala 1, Anton Lennikov 1, Anthony Mukwaya 2, and Hu Huang 1,* 1 Department of Ophthalmology, University of Missouri, Columbia, MO 65212, United States of America; [email protected] (M.S.S.); [email protected] (A.L.) 2 Department of Ophthalmology, Institute for Clinical and Experimental Medicine, Faculty of Health Sciences, Linköping University, Linköping, 58183 , Sweden; [email protected] * Correspondence: [email protected]; Tel: +1 573‐882‐9899 # Madhu Sudhana Saddala and Anton Lennikov have contributed equally to this work. Keywords: Age‐related macular degeneration; CXCR5; EMT, FoxO; Mitochondria; RNA‐Seq, Gene Ontology; KEGG; Retinal pigment epithelium Supplementary Figures Biomedicines 2020, 8, x; doi: FOR PEER REVIEW www.mdpi.com/journal/biomedicines Biomolecules 2020, 10, x FOR PEER REVIEW 2 of 13 Biomolecules 2020, 10, x FOR PEER REVIEW 3 of 13 Figure S1: Quantitative profiling of mouse RPE tissue between control and CXCR5 ko groups. Pearson correlation coefficient plot of the log2 ratio between two groups (A) before and (B) after normalization. Potential relationships or correlations amongst the different data attributes is to leverage a pair‐wise correlation matrix in control and CXCR5 knockout groups. Biomolecules 2020, 10, x FOR PEER REVIEW 4 of 13 Biomolecules 2020, 10, x FOR PEER REVIEW 5 of 13 Figure S2: Potential relationships or correlations amongst the different data attributes is to leverage a pair‐wise correlation matrix in control and CXCR5 knockout groups. (A) heatmap of total differentially expressed genes (B) The cluster of main heatmap represented twenty differentially expressed genes. -
EHD4) in the Kidney
University of Nebraska Medical Center DigitalCommons@UNMC Theses & Dissertations Graduate Studies Spring 5-5-2018 Role of EPS15 Homology Domain-Containing Protein 4 (EHD4) in the Kidney Shamma Rahman University of Nebraska Medical Center Follow this and additional works at: https://digitalcommons.unmc.edu/etd Part of the Cellular and Molecular Physiology Commons, and the Systems and Integrative Physiology Commons Recommended Citation Rahman, Shamma, "Role of EPS15 Homology Domain-Containing Protein 4 (EHD4) in the Kidney" (2018). Theses & Dissertations. 253. https://digitalcommons.unmc.edu/etd/253 This Dissertation is brought to you for free and open access by the Graduate Studies at DigitalCommons@UNMC. It has been accepted for inclusion in Theses & Dissertations by an authorized administrator of DigitalCommons@UNMC. For more information, please contact [email protected]. ROLE OF EPS15 HOMOLOGY DOMAIN-CONTAINING PROTEIN 4 (EHD4) IN THE KIDNEY by Shamma S. Rahman A DISSERTATION Presented to the Faculty of the University of Nebraska Graduate College in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy Cellular & Integrative Physiology Graduate Program Under the Supervision of Assistant Professor Erika I. Boesen University of Nebraska Medical Center Omaha, Nebraska January, 2018 Supervisory Committee: Steven Sansom, Ph.D. Hamid Band, M.D., Ph.D. Kaushik P. Patel, Ph.D. i ACKNOWLEDGEMENTS When I started my journey in the “awe-inspiring” world of graduate studies, I never imagined that I would end up in a kidney lab. I had almost no previous knowledge about the complexity of renal physiology, let alone working with animal models. I am extremely fortunate that I found Dr.