Limb Bone Scaling in Hopping Macropods and Quadrupedal
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A Phylogeny and Timescale for Marsupial Evolution Based on Sequences for Five Nuclear Genes
J Mammal Evol DOI 10.1007/s10914-007-9062-6 ORIGINAL PAPER A Phylogeny and Timescale for Marsupial Evolution Based on Sequences for Five Nuclear Genes Robert W. Meredith & Michael Westerman & Judd A. Case & Mark S. Springer # Springer Science + Business Media, LLC 2007 Abstract Even though marsupials are taxonomically less diverse than placentals, they exhibit comparable morphological and ecological diversity. However, much of their fossil record is thought to be missing, particularly for the Australasian groups. The more than 330 living species of marsupials are grouped into three American (Didelphimorphia, Microbiotheria, and Paucituberculata) and four Australasian (Dasyuromorphia, Diprotodontia, Notoryctemorphia, and Peramelemorphia) orders. Interordinal relationships have been investigated using a wide range of methods that have often yielded contradictory results. Much of the controversy has focused on the placement of Dromiciops gliroides (Microbiotheria). Studies either support a sister-taxon relationship to a monophyletic Australasian clade or a nested position within the Australasian radiation. Familial relationships within the Diprotodontia have also proved difficult to resolve. Here, we examine higher-level marsupial relationships using a nuclear multigene molecular data set representing all living orders. Protein-coding portions of ApoB, BRCA1, IRBP, Rag1, and vWF were analyzed using maximum parsimony, maximum likelihood, and Bayesian methods. Two different Bayesian relaxed molecular clock methods were employed to construct a timescale for marsupial evolution and estimate the unrepresented basal branch length (UBBL). Maximum likelihood and Bayesian results suggest that the root of the marsupial tree is between Didelphimorphia and all other marsupials. All methods provide strong support for the monophyly of Australidelphia. Within Australidelphia, Dromiciops is the sister-taxon to a monophyletic Australasian clade. -
Australian Marsupial Species Identification
G Model FSIGSS-793; No. of Pages 2 Forensic Science International: Genetics Supplement Series xxx (2011) xxx–xxx Contents lists available at ScienceDirect Forensic Science International: Genetics Supplement Series jo urnal homepage: www.elsevier.com/locate/FSIGSS Australian marsupial species identification a, b,e c,d d d Linzi Wilson-Wilde *, Janette Norman , James Robertson , Stephen Sarre , Arthur Georges a ANZPAA National Institute of Forensic Science, Victoria, Australia b Museum Victoria, Victoria, Australia c Australian Federal Police, Australian Capital Territory, Australia d University of Canberra, Australian Capital Territory, Australia e Melbourne University, Victoria, Australia A R T I C L E I N F O A B S T R A C T Article history: Wildlife crime, the illegal trade in animals and animal products, is a growing concern and valued at up to Received 10 October 2011 US$20 billion globally per year. Australia is often targeted for its unique fauna, proximity to South East Accepted 10 October 2011 Asia and porous borders. Marsupials of the order Diprotodontia (including koala, wombats, possums, gliders, kangaroos) are sometimes targeted for their skin, meat and for the pet trade. However, species Keywords: identification for forensic purposes must be underpinned by robust phylogenetic information. A Species identification Diprotodont phylogeny containing a large number of taxa generated from nuclear and mitochondrial Forensic data has not yet been constructed. Here the mitochondrial (COI and ND2) and nuclear markers (APOB, DNA IRBP and GAPD) are combined to create a more robust phylogeny to underpin a species identification COI Barcoding method for the marsupial order Diprotodontia. Mitochondrial markers were combined with nuclear Diprotodontia markers to amplify 27 genera of Diprotodontia. -
BEER'i\I'bones Volume1 Lssue2 APRITJ-Gg7
BEER'I\I'BONES Volume1 lssue2 APRITJ-gg7 'thc with grxld cornpliny, is like a little chnmtrr, across crevit\sc', irtLr-! \)l f,ii.r.ii.u. liciiiirrirr,.;li,ri titrrvii u sit;1;e,.iiurig .l J)aisu!e. 'louge' llessage from the ,\lcrxrllri dorvn thc iltd into the President Iror tltose ot vou c()nternpllting tirssil chiunber. This may sound daunting but Gav has c'llrckedttre 'The Y V elcorneback tirr frorn 1997. minuteon Run". This cave was tust oprned in the Hope you all h:rd a grxxt breali. sixties with the aid of a smiill Things are looking gcxrrltor 1997 blast or two and wa.stbund to bc with the KI tnp plannedand only relatively uruemarlelbie as t'nr as needing those tlrrt {iIIe string trl cave tbrmation was cclnce-med.It pay Lyndlee betirre 9th April or lvAS subsequently used ils a tiey wlll miss out. If Iou now training cave. In 199i. cavie anl L'itn't corne tirr whatcver rcllsorr iunateur palaeontol0gist Lurds"rv also tell Lyndlee or \!e mlrv get Hatchernoticed that the urverskrj stuck paying tor those thut tion't been walking straight through a rum up. Sthenurus skeleton, md (rvith \!'ell, enough from me. I'm sure permission) conducted a the rest of the nervsletter is preliminary snartrng, er. I meirr temptingyou so havea gotx1reud. testdig. However.if it rvlusn'ttbr this, the cave wouid.never huve Jts Colrner Pre-tident cornc to tie attention of ex;rn palaeontologist.Gavin Prideau.x. Kangaroo Island Dig. The imgrruurce of the nc!'v The big is tlrst the trlp to i\lcrxrta thls yelr. -
BIOLOGICAL SURVEY of KANGAROO ISLAND SOUTH AUSTRALIA in NOVEMBER 1989 and 1990
A BIOLOGICAL SURVEY OF KANGAROO ISLAND SOUTH AUSTRALIA IN NOVEMBER 1989 and 1990 Editors A. C. Robinson D. M. Armstrong Biological Survey and Research Section Heritage and Biodiversity Division Department for Environment, Heritage and Aboriginal Affairs, South Australia 1999 i Kangaroo Island Biological Survey The Biological Survey of Kangaroo Island, South Australia was carried out with the assistance of funds made available by, the Commonwealth of Australia under the 1989-90 National Estate Grants Programs and the State Government of South Australia. The views and opinions expressed in this report are those of the authors and do not necessarily represent the views or policies of the Australian Heritage Commission or the State Government of South Australia. The report may be cited as: Robinson, A. C. & Armstrong, D. M. (eds) (1999) A Biological Survey of Kangaroo Island, South Australia, 1989 & 1990. (Heritage and Biodiversity Section, Department for Environment, Heritage and Aboriginal Affairs, South Australia). Copies of the report may be accessed in the library: Environment Australia Department for Environment, Heritage and Aboriginal Affairs GPO Box 636 or 1st Floor, Roma Mitchell House CANBERRA ACT 2601 136 North Terrace, ADELAIDE SA 5000 EDITORS A.C. Robinson, D.M. Armstrong, Biological Survey and Research, Heritage &Biodiversity Section, Department for Environment Heritage and Aboriginal Affairs PO Box 1047 ADELAIDE 5001 AUTHORS D M Armstrong, P.J.Lang, A C Robinson, Biological Survey and Research, Heritage &Biodiversity Section, Department for Environment, Heritage and Aboriginal Affairs PO Box 1047 ADELAIDE 5001 N Draper, Australian Cultural Heritage Management Pty Ltd, 53 Hackney Rd. HACKNEY, SA 5069 G Carpenter, Biodiversity Monitoring and Evaluation, Heritage &Biodiversity Section, Department for Environment Heritage and Aboriginal Affairs. -
Relative Demographic Susceptibility Does Not Explain the Extinction Chronology of Sahul's Megafauna
bioRxiv preprint doi: https://doi.org/10.1101/2020.10.16.342303; this version posted October 19, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 Full title: Relative demographic susceptibility does not explain the 2 extinction chronology of Sahul’s megafauna 3 Short title: Demographic susceptibility of Sahul’s megafauna 4 5 Corey J. A. Bradshaw1,2,*, Christopher N. Johnson3,2, John Llewelyn1,2, Vera 6 Weisbecker4,2, Giovanni Strona5, and Frédérik Saltré1,2 7 1 Global Ecology, College of Science and Engineering, Flinders University, GPO Box 2100, Adelaide, 8 South Australia 5001, Australia, 2 ARC Centre of Excellence for Australian Biodiversity and Heritage, 9 EpicAustralia.org, 3 Dynamics of Eco-Evolutionary Pattern, University of Tasmania, Hobart, Tasmania 10 7001, Australia, 4 College of Science and Engineering, Flinders University, GPO Box 2100, Adelaide, 11 South Australia 5001, Australia, 5 Research Centre for Ecological Change, University of Helsinki, 12 Viikinkaari 1, Biocentre 3, 00790, Helsinki, Finland 13 14 * [email protected] (CJAB) 15 ORCIDs: C.J.A. Bradshaw: 0000-0002-5328-7741; C.N. Johnson: 0000-0002-9719-3771; J. 16 Llewelyn: 0000-0002-5379-5631; V. WeisbecKer: 0000-0003-2370-4046; F. Saltré: 0000- 17 0002-5040-3911 18 19 Keywords: vombatiformes, macropodiformes, flightless birds, carnivores, extinction 20 Author Contributions: C.J.A.B and F.S. conceptualized the paper, and C.J.A.B. -
Marsupial Fossils from Wellington Caves, New South Wales; the Historic and Scientific Significance of the Collections in the Australian Museum, Sydney
AUSTRALIAN MUSEUM SCIENTIFIC PUBLICATIONS Dawson, Lyndall, 1985. Marsupial fossils from Wellington Caves, New South Wales; the historic and scientific significance of the collections in the Australian Museum, Sydney. Records of the Australian Museum 37(2): 55–69. [1 August 1985]. doi:10.3853/j.0067-1975.37.1985.335 ISSN 0067-1975 Published by the Australian Museum, Sydney naturenature cultureculture discover discover AustralianAustralian Museum Museum science science is is freely freely accessible accessible online online at at www.australianmuseum.net.au/publications/www.australianmuseum.net.au/publications/ 66 CollegeCollege Street,Street, SydneySydney NSWNSW 2010,2010, AustraliaAustralia Records of the Australian Museum (1985) Vo!. 37(2): 55-69. ISSN·1975·0067. 55 Marsupial Fossils from Wellington Caves, New South Wales; the Historic and Scientific Significance of the Collections in the Australian Museum, Sydney LYNDALL DAWSON School of Zoology, University of New South Wales, Kensington, N.S.W., 2033 ABSTRACT. Since 1830, fossil vertebrates, particularly marsupials, have been collected from Wellington Caves, New South Wales. The history of these collections, and particularly of the collection housed in the Australian Museum, Sydney, is reviewed in this paper. A revised faunal list of marsupials from Wellington Caves is included, based on specimens in mUSeum collections. The provenance of these specimens is discussed. The list comprises 58 species, of which 30 are extinct throughout Australia, and a further 12 no longer inhabit the Wellington region. The deposit also contains bones of reptiles, birds, bats, rodents and monotremeS. On the basis of faunal correlation and some consideration of taphonomy in the deposits, the age range of the fossils represented in the mUSeum collections is suggested to be from the late Pliocene to late Pleistocene (with a possible minimum age of 40,000 years BP). -
Wanburoo Hilarus Gen. Et Sp. Nov., a Lophodont Bulungamayine Kangaroo
Records of the Western Australian Museum Supplement No. 57: 239-253 (1999). Wanburoo hilarus gen. et sp. nov., a lophodont bulungamayine kangaroo (Marsupialia: Macropodoidea: Bulungamayinae) from the Miocene deposits of Riversleigh, northwestern Queensland Bernard N. Cooke School of Life Sciences, Queensland University of Technology, GPO Box 2434, Brisbane, Qld 4001; email: [email protected] and, School of Biological Science, University of New South Wales, Sydney, NSW 2052 Abstract - Wanburoo hi/ants gen. et sp. novo is described on the basis of specimens recovered from a number of Riversleigh sites ranging in estimated age from early Middle Miocene to early Late Miocene. The new species is characterized by low-crowned, lophodont molars in which hypolophid morphology clearly indicates bulungamayine affinity. The relatively close temporal proximity and lophodont molar morphology of the new species invites comparison with the Late Miocene macropodids, Dorcopsoides fossilis and Hadronomas puckridgi. While there is a number of phenetic similarities between the species, many of these appear to be symplesiomorphic. However, a number of apomorphies are suggested as indicating a phylogenetic relationship between the new species and early, non-balbarine macropodids represented by D. fossilis and H. puckridgi. Of these two taxa, the relationship appears stronger with Hadronomas than with Dorcopsoides. Balbarine-like characters present in Dorcopsoides are likely plesiomorphic or the result of convergence. While bulungamayines are herein regarded as more likely than balbarines to be ancestral to macropodids, the possibility of a diphyletic origin for macropodids cannot be dismissed. The suggested relationship between bulungamayines and macropodids casts doubt on the inclusion of Bulungamayinae within Potoroidae. -
On the Evolution of Kangaroos and Their Kin (Family Macropodidae) Using Retrotransposons, Nuclear Genes and Whole Mitochondrial Genomes
ON THE EVOLUTION OF KANGAROOS AND THEIR KIN (FAMILY MACROPODIDAE) USING RETROTRANSPOSONS, NUCLEAR GENES AND WHOLE MITOCHONDRIAL GENOMES William George Dodt B.Sc. (Biochemistry), B.Sc. Hons (Molecular Biology) Principal Supervisor: Dr Matthew J Phillips (EEBS, QUT) Associate Supervisor: Dr Peter Prentis (EEBS, QUT) External Supervisor: Dr Maria Nilsson-Janke (Senckenberg Biodiversity and Research Centre, Frankfurt am Main) Submitted in fulfilment of the requirements for the degree of Doctor of Philosophy Science and Engineering Faculty Queensland University of Technology 2018 1 Keywords Adaptive radiation, ancestral state reconstruction, Australasia, Bayesian inference, endogenous retrovirus, evolution, hybridization, incomplete lineage sorting, incongruence, introgression, kangaroo, Macropodidae, Macropus, mammal, marsupial, maximum likelihood, maximum parsimony, molecular dating, phylogenetics, retrotransposon, speciation, systematics, transposable element 2 Abstract The family Macropodidae contains the kangaroos, wallaroos, wallabies and several closely related taxa that occupy a wide variety of habitats in Australia, New Guinea and surrounding islands. This group of marsupials is the most species rich family within the marsupial order Diprotodontia. Despite significant investigation from previous studies, much of the evolutionary history of macropodids (including their origin within Diprotodontia) has remained unclear, in part due to an incomplete early fossil record. I have utilized several forms of molecular sequence data to shed -
Australian Marsupial Species Identification
Forensic Science International: Genetics Supplement Series 3 (2011) e543–e544 Contents lists available at ScienceDirect Forensic Science International: Genetics Supplement Series jo urnal homepage: www.elsevier.com/locate/FSIGSS Australian marsupial species identification a, b,e c,d d d Linzi Wilson-Wilde *, Janette Norman , James Robertson , Stephen Sarre , Arthur Georges a ANZPAA National Institute of Forensic Science, Victoria, Australia b Museum Victoria, Victoria, Australia c Australian Federal Police, Australian Capital Territory, Australia d University of Canberra, Australian Capital Territory, Australia e Melbourne University, Victoria, Australia A R T I C L E I N F O A B S T R A C T Article history: Wildlife crime, the illegal trade in animals and animal products, is a growing concern and valued at up to Received 10 October 2011 US$20 billion globally per year. Australia is often targeted for its unique fauna, proximity to South East Accepted 10 October 2011 Asia and porous borders. Marsupials of the order Diprotodontia (including koala, wombats, possums, gliders, kangaroos) are sometimes targeted for their skin, meat and for the pet trade. However, species Keywords: identification for forensic purposes must be underpinned by robust phylogenetic information. A Species identification Diprotodont phylogeny containing a large number of taxa generated from nuclear and mitochondrial Forensic data has not yet been constructed. Here the mitochondrial (COI and ND2) and nuclear markers (APOB, DNA IRBP and GAPD) are combined to create a more robust phylogeny to underpin a species identification COI Barcoding method for the marsupial order Diprotodontia. Mitochondrial markers were combined with nuclear Diprotodontia markers to amplify 27 genera of Diprotodontia. -
Behaviour, Group Dynamics, and Health of Free-Ranging Eastern Grey Kangaroos
Behaviour, group dynamics, and health of free-ranging eastern grey kangaroos (Macropus giganteus) Jai Mikaela Green-Barber Submitted for the completion of a Doctor of Philosophy (Science) degree at Western Sydney University November 2017 Dedication The following thesis is dedicated to my hero. You instilled in me an appreciation of nature and of knowledge, you showed me the joys of solving puzzles and debating ideas, and you always encouraged me to be daring when the reward was worth the risk. Most importantly you always taught me to laugh along the way, to laugh at myself, and not take life too seriously. These gifts you have given me have led me down this path, and gave me the strength to complete the journey. Your influence will continue to shape the rest of my life. This one’s for you Dad xoxo Acknowledgements I would like to thank Associate Professor Julie Old for the encouragement and support needed to complete this thesis. I really appreciate you putting up with my essay length emails full of questions and all the feedback on the countless draft manuscripts and presentations produced throughout my candidature. To Dr Hayley Stannard, thank you for teaching me to collect blood samples and run blood chemistry analysis, and for the helpful feedback on draft manuscripts. Thank you to Dr Oselyne Ong for teaching me how to run antimicrobial assays, Megan Callander for teaching me how to use various microsatellite analysis software, and Professor John Hunt for providing feedback on draft manuscripts and advice on analysis. To all the volunteers that assisted me in the field your help was greatly appreciated. -
FIELDIANA Geology
FIELDIANA Geology Publistied by Field Museum of Natural History New Series, No. 8 THE FAMILIES AND GENERA OF MARSUPIALIA LARRY G.MARSHALL •.981 UBRARY FIELD m^cim July 20, 1981 Publication 1320 THE FAMILIES AND GENERA OF MARSUPIALIA FIELDIANA Geology Published by Field Museum of Natural History New Series, No. 8 THE FAMILIES AND GENERA OF MARSUPIALIA LARRY G.MARSHALL Assistant Curator of Fossil Mammals DqMirtment of Geology Field Museum of Natural History Accepted for publication August 6, 1979 July 20, 1981 Publication 1320 Library of Congress Catalog No.: 81-65225 ISSN 0096-2651 PRINTED IN THE UNITED STATES OF AMERICA CONTENTS Part A 1 i^4troduc^on 1 Review of History and Development of Marsupial Systematics 1 Part B 19 Detailed Classification of Families and Genera of Marsupialia 19 I. New World and European Marsupialia 19 Fam. Didelphidae 19 Subfam. Dideiphinae 19 Subfam. Caluromyinae 21 *Subfam. Glasbiinae 21 *Subfam. Caroloameghiniinae 21 •Fam. Sparassocynidae 21 •Fam. Pediomyidae 21 Fam. Microbiotheriidae 21 •Fam. Stagodonddae 22 •Fam. Borhyaenidae 22 •Subfam. Hathlyacyninae 22 •Subfam. Borhyaeninae 23 •Subfam. Prothylacyninae 23 •Subfam. Proborhyaeninae 23 •Fam. Thylacosmilidae 23 •Fam. Argyrolagidae 24 Fam. Caenolesddae 24 Subfam. Caenolestinae 24 Tribe Caenolestini 24 •Tribe Pichipilini 24 •Subfam. Palaeothentinae 24 •Subfam. Abderitinae 25 •Tribe Parabderitini 25 •Tribe Abderitini 25 •Fam. Polydolopidae 25 •Fam. Groeberiidae 25 Marsupialia incertae sedis 25 Marsupialia(?) 25 II. Australasian Marsupialia 26 Fam. Dasyuridae 26 Subfam. Dasyurinae 26 Tribe Dasyurini 26 Tribe Sarcophilini 26 Fam. Myrmecobiidae 27 •Fam. Thylacinidae 27 Fam. Peramelidae 27 Fam. Thylacomyidae 27 Fam. Notoryctidae 27 Fam. Phalangeridae 27 Subfam. Phalangerinae 27 Subfam. Trichosurinae 28 •Fam. -
Order Suborder Infraorder Superfamily Family
ORDER SUBORDER INFRAORDER SUPERFAMILY FAMILY SUBFAMILY TRIBE GENUS SUBGENUS SPECIES Monotremata Tachyglossidae Tachyglossus aculeatus Monotremata Tachyglossidae Zaglossus attenboroughi Monotremata Tachyglossidae Zaglossus bartoni Monotremata Tachyglossidae Zaglossus bruijni Monotremata Ornithorhynchidae Ornithorhynchus anatinus Didelphimorphia Didelphidae Caluromyinae Caluromys Caluromys philander Didelphimorphia Didelphidae Caluromyinae Caluromys Mallodelphys derbianus Didelphimorphia Didelphidae Caluromyinae Caluromys Mallodelphys lanatus Didelphimorphia Didelphidae Caluromyinae Caluromysiops irrupta Didelphimorphia Didelphidae Caluromyinae Glironia venusta Didelphimorphia Didelphidae Didelphinae Chironectes minimus Didelphimorphia Didelphidae Didelphinae Didelphis aurita Didelphimorphia Didelphidae Didelphinae Didelphis imperfecta Didelphimorphia Didelphidae Didelphinae Didelphis marsupialis Didelphimorphia Didelphidae Didelphinae Didelphis pernigra Didelphimorphia Didelphidae Didelphinae Didelphis virginiana Didelphimorphia Didelphidae Didelphinae Didelphis albiventris Didelphimorphia Didelphidae Didelphinae Gracilinanus formosus Didelphimorphia Didelphidae Didelphinae Gracilinanus emiliae Didelphimorphia Didelphidae Didelphinae Gracilinanus microtarsus Didelphimorphia Didelphidae Didelphinae Gracilinanus marica Didelphimorphia Didelphidae Didelphinae Gracilinanus dryas Didelphimorphia Didelphidae Didelphinae Gracilinanus aceramarcae Didelphimorphia Didelphidae Didelphinae Gracilinanus agricolai Didelphimorphia Didelphidae Didelphinae