Annual Macrofauna Production in a Hard-Bottom Reef Community
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The Gut Microbiome of the Sea Urchin, Lytechinus Variegatus, from Its Natural Habitat Demonstrates Selective Attributes of Micro
FEMS Microbiology Ecology, 92, 2016, fiw146 doi: 10.1093/femsec/fiw146 Advance Access Publication Date: 1 July 2016 Research Article RESEARCH ARTICLE The gut microbiome of the sea urchin, Lytechinus variegatus, from its natural habitat demonstrates selective attributes of microbial taxa and predictive metabolic profiles Joseph A. Hakim1,†, Hyunmin Koo1,†, Ranjit Kumar2, Elliot J. Lefkowitz2,3, Casey D. Morrow4, Mickie L. Powell1, Stephen A. Watts1,∗ and Asim K. Bej1,∗ 1Department of Biology, University of Alabama at Birmingham, 1300 University Blvd, Birmingham, AL 35294, USA, 2Center for Clinical and Translational Sciences, University of Alabama at Birmingham, Birmingham, AL 35294, USA, 3Department of Microbiology, University of Alabama at Birmingham, Birmingham, AL 35294, USA and 4Department of Cell, Developmental and Integrative Biology, University of Alabama at Birmingham, 1918 University Blvd., Birmingham, AL 35294, USA ∗Corresponding authors: Department of Biology, University of Alabama at Birmingham, 1300 University Blvd, CH464, Birmingham, AL 35294-1170, USA. Tel: +1-(205)-934-8308; Fax: +1-(205)-975-6097; E-mail: [email protected]; [email protected] †These authors contributed equally to this work. One sentence summary: This study describes the distribution of microbiota, and their predicted functional attributes, in the gut ecosystem of sea urchin, Lytechinus variegatus, from its natural habitat of Gulf of Mexico. Editor: Julian Marchesi ABSTRACT In this paper, we describe the microbial composition and their predictive metabolic profile in the sea urchin Lytechinus variegatus gut ecosystem along with samples from its habitat by using NextGen amplicon sequencing and downstream bioinformatics analyses. The microbial communities of the gut tissue revealed a near-exclusive abundance of Campylobacteraceae, whereas the pharynx tissue consisted of Tenericutes, followed by Gamma-, Alpha- and Epsilonproteobacteria at approximately equal capacities. -
(Psammechinus Miliaris) and Their Response to Phenanthrene Exposure
Marine Environmental Research xxx (2010) 1e9 Contents lists available at ScienceDirect Marine Environmental Research journal homepage: www.elsevier.com/locate/marenvrev Sex-specific biochemical and histological differences in gonads of sea urchins (Psammechinus miliaris) and their response to phenanthrene exposure Sabine Schäfer*,1, Doris Abele, Ellen Weihe, Angela Köhler Alfred Wegener Institute for Polar and Marine Research within the Helmholtz Association, Am Handelshafen 12, 27570 Bremerhaven, Germany article info abstract Article history: Female and male individuals of the same species often differ with respect to their susceptibility to Received 16 August 2010 toxicant stress. In the present study, sea urchins (Psammechinus miliaris) of both sexes were exposed to À À Received in revised form high (150 mgL 1) and environmentally relevant (5 mgL 1) concentrations of phenanthrene over 10 days. 14 October 2010 À While food intake was significantly decreased following exposure to 150 mgL 1 phenanthrene, histo- Accepted 19 October 2010 logical indices (lipofuscin accumulation, fibrosis, oocyte atresia), energetic status (energy charge, sum adenylates, AMP/ATP ratio) as well as ascorbate levels in the gonads showed either little or no effect upon Keywords: phenanthrene exposure. However, most parameters (vitamin C, energy charge, sum adenylates, AMP/ATP Sea urchin fi fi Gonad ratio, ATP and ADP concentrations, lipofuscin content, brosis) signi cantly differed between male and fi Lipofuscin female animals. This study illustrates the dif culties to identify toxic injury in reproductive tissue as it Energy charge may be superimposed by gametogenesis and spawning of gametes. Phenanthrene Ó 2010 Elsevier Ltd. All rights reserved. Ascorbate Sex-specific differences ATP ATP/AMP ratio Gametogenesis 1. -
Marlin Marine Information Network Information on the Species and Habitats Around the Coasts and Sea of the British Isles
MarLIN Marine Information Network Information on the species and habitats around the coasts and sea of the British Isles Ophiothrix fragilis and/or Ophiocomina nigra brittlestar beds on sublittoral mixed sediment MarLIN – Marine Life Information Network Marine Evidence–based Sensitivity Assessment (MarESA) Review Eliane De-Bastos & Jacqueline Hill 2016-01-28 A report from: The Marine Life Information Network, Marine Biological Association of the United Kingdom. Please note. This MarESA report is a dated version of the online review. Please refer to the website for the most up-to-date version [https://www.marlin.ac.uk/habitats/detail/1068]. All terms and the MarESA methodology are outlined on the website (https://www.marlin.ac.uk) This review can be cited as: De-Bastos, E.S.R. & Hill, J., 2016. [Ophiothrix fragilis] and/or [Ophiocomina nigra] brittlestar beds on sublittoral mixed sediment. In Tyler-Walters H. and Hiscock K. (eds) Marine Life Information Network: Biology and Sensitivity Key Information Reviews, [on-line]. Plymouth: Marine Biological Association of the United Kingdom. DOI https://dx.doi.org/10.17031/marlinhab.1068.1 The information (TEXT ONLY) provided by the Marine Life Information Network (MarLIN) is licensed under a Creative Commons Attribution-Non-Commercial-Share Alike 2.0 UK: England & Wales License. Note that images and other media featured on this page are each governed by their own terms and conditions and they may or may not be available for reuse. Permissions beyond the scope of this license are available here. -
Effect of Diatom Based Biofilms on Paracentrotus Lividus Competent Larvae Marta Castilla-Gavilán, Meshi Reznicov, Vincent Turpin, Priscilla Decottignies, Bruno Cognie
Journal Pre-proof Sea urchin recruitment: Effect of diatom based biofilms on Paracentrotus lividus competent larvae Marta Castilla-Gavilán, Meshi Reznicov, Vincent Turpin, Priscilla Decottignies, Bruno Cognie To cite this version: Marta Castilla-Gavilán, Meshi Reznicov, Vincent Turpin, Priscilla Decottignies, Bruno Cognie. Jour- nal Pre-proof Sea urchin recruitment: Effect of diatom based biofilms on Paracentrotus lividus com- petent larvae. Aquaculture, Elsevier, 2020, 515, pp.734559. 10.1016/j.aquaculture.2019.734559. hal-02378591 HAL Id: hal-02378591 https://hal.archives-ouvertes.fr/hal-02378591 Submitted on 25 Nov 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Journal Pre-proof Sea urchin recruitment: Effect of diatom based biofilms on Paracentrotus lividus competent larvae Marta Castilla-Gavilán, Meshi Reznicov, Vincent Turpin, Priscilla Decottignies, Bruno Cognie PII: S0044-8486(19)31658-8 DOI: https://doi.org/10.1016/j.aquaculture.2019.734559 Reference: AQUA 734559 To appear in: Aquaculture Received Date: 5 July 2019 Revised Date: 13 September 2019 Accepted Date: 1 October 2019 Please cite this article as: Castilla-Gavilán, M., Reznicov, M., Turpin, V., Decottignies, P., Cognie, B., Sea urchin recruitment: Effect of diatom based biofilms on Paracentrotus lividus competent larvae, Aquaculture (2019), doi: https://doi.org/10.1016/j.aquaculture.2019.734559. -
Report on the Development of a Marine Landscape Classification for the Irish Sea
Irish Sea Pilot - Report on the development of a marine landscape classification for the Irish Sea 7. Appendix II: RV Lough Foyle cruise (Irish) Sea Mounds (NW Irish Sea) Habitat Mapping Introduction and methods All surveys were undertaken aboard the RV Lough Foyle (DARD) during June 2003. Acoustic surveys A RoxAnn™ acoustic ground discrimination survey (AGDS) was undertaken of the main survey area between 1st and 3rd June 2003, by A. Mitchell. Two additional RoxAnn™ datasets were collected by M. Service on 23rd June 2003 during the multibeam sonar survey. All RoxAnn™ datasets were obtained using a hull-mounted 38kHz transducer, a GroundMaster RoxAnn™ signal processor combined with RoxMap software, saving at a rate of between 1 and 5s intervals. An Atlas differential Geographical Positioning Systems (dGPS), providing positional information, was integrated via the RoxMap laptop. Track spacing varied between 500m for the large area and 100m for the multibeam survey areas. Multibeam sonar datasets were collected for two of the (Irish) Sea Mounds on 23rd June 2003, using an EM2000 Multibeam Echosounder (MBES, Kongsberg Simrad Ltd; operators: J. Hancock and C. Harper.). The sonar has a frequency of 200kHz and a ping rate of 10Hz. It operates with 111 roll-stabilised beams per ping with a 1.5 degree beam width along-track and 2.5 degree beam width across-track. The system has an angular coverage of 120 degrees. In addition to bathymetric coverage, the system has an integrated seabed imaging capability through a combination of phase and amplitude detection (referred to here as ‘backscatter’). The EM2000 was deployed with the following ancillary parts: • Seapath 200 – this provides real-time heading, attitude, position and velocity solutions with a 1pps timing clock for update of the sonar together with full differential corrections supplied by the IALA GPS network. -
The Marine Fauna of Lundy Ecidnodermata
Rep. Lundy Fld Soc. 29 (1978) THE MARINE FAUNA OF LUNDY ECIDNODERMATA P. A. TYLER Department of Oceanography, University College, Swansea, S. Wales, U.K. INTRODUCTION The five classes of echinoderms are a conspicuous element of the fauna in truly marine areas. The British echinoderm fauna has been treated in detail by Mortensen (1927). In shelf sea areas they are usually found below LWN tide level with occasional species moving up into the littoral zone. Examples of the dominant extant groups are found in all types of substrates, the ophiuroids and the heart urchins being particularly important in the determination of soft substrate benthic communities (Thorson, 1947). SOURCES OF MATERIAL The collections made by divers during marine surveys of Lundy have pro duced a considerable record particularly of the conspicuous epifaunal asteroids, regular echinoids and holothurians. Observations of the less conspicuous in faunal ophiuroids and irregular echinoids have been obtained by divers and by benthic surveys using R.V. 'Ocean Crest'. THE LUNDY FAUNA- GENERAL CONSIDERATIONS To date, 24 species of echinoderm have been recorded around Lundy. Of these species only 8 were recorded by Harvey (1950, 1951) at Lundy. The most noteable exceptions to the fauna are Acrocnida brachiata and Spatangus purpureus, both of which have been found further up the Bristol Channel and may be supposed to be found round Lundy where a suitable substrate exists for these infaunal species. A number of species appear to be common all round the island. These include Asterias rubens, Marthasterias glacia/is, Luidia ciliaris, Echinus esculentus and Holothuria forskali. The very rare sea cucumber Lepto synapta decaria has been reported as occurring round Lundy (Hoare & Wilson, 1976). -
Non-Destructive Morphological Observations of the Fleshy Brittle Star, Asteronyx Loveni Using Micro-Computed Tomography (Echinodermata, Ophiuroidea, Euryalida)
A peer-reviewed open-access journal ZooKeys 663: 1–19 (2017) µCT description of Asteronyx loveni 1 doi: 10.3897/zookeys.663.11413 RESEARCH ARTICLE http://zookeys.pensoft.net Launched to accelerate biodiversity research Non-destructive morphological observations of the fleshy brittle star, Asteronyx loveni using micro-computed tomography (Echinodermata, Ophiuroidea, Euryalida) Masanori Okanishi1, Toshihiko Fujita2, Yu Maekawa3, Takenori Sasaki3 1 Faculty of Science, Ibaraki University, 2-1-1 Bunkyo, Mito, Ibaraki, 310-8512 Japan 2 National Museum of Nature and Science, 4-1-1 Amakubo, Tsukuba, Ibaraki, 305-0005 Japan 3 University Museum, The Uni- versity of Tokyo, 7-3-1 Hongo, Bunkyo, Tokyo, 113-0033 Japan Corresponding author: Masanori Okanishi ([email protected]) Academic editor: Y. Samyn | Received 6 December 2016 | Accepted 23 February 2017 | Published 27 March 2017 http://zoobank.org/58DC6268-7129-4412-84C8-DCE3C68A7EC3 Citation: Okanishi M, Fujita T, Maekawa Y, Sasaki T (2017) Non-destructive morphological observations of the fleshy brittle star, Asteronyx loveni using micro-computed tomography (Echinodermata, Ophiuroidea, Euryalida). ZooKeys 663: 1–19. https://doi.org/10.3897/zookeys.663.11413 Abstract The first morphological observation of a euryalid brittle star,Asteronyx loveni, using non-destructive X- ray micro-computed tomography (µCT) was performed. The body of euryalids is covered by thick skin, and it is very difficult to observe the ossicles without dissolving the skin. Computed tomography with micrometer resolution (approximately 4.5–15.4 µm) was used to construct 3D images of skeletal ossicles and soft tissues in the ophiuroid’s body. Shape and positional arrangement of taxonomically important ossicles were clearly observed without any damage to the body. -
Sea Urchin Aquaculture
American Fisheries Society Symposium 46:179–208, 2005 © 2005 by the American Fisheries Society Sea Urchin Aquaculture SUSAN C. MCBRIDE1 University of California Sea Grant Extension Program, 2 Commercial Street, Suite 4, Eureka, California 95501, USA Introduction and History South America. The correct color, texture, size, and taste are factors essential for successful sea The demand for fish and other aquatic prod- urchin aquaculture. There are many reasons to ucts has increased worldwide. In many cases, develop sea urchin aquaculture. Primary natural fisheries are overexploited and unable among these is broadening the base of aquac- to satisfy the expanding market. Considerable ulture, supplying new products to growing efforts to develop marine aquaculture, particu- markets, and providing employment opportu- larly for high value products, are encouraged nities. Development of sea urchin aquaculture and supported by many countries. Sea urchins, has been characterized by enhancement of wild found throughout all oceans and latitudes, are populations followed by research on their such a group. After World War II, the value of growth, nutrition, reproduction, and suitable sea urchin products increased in Japan. When culture systems. Japan’s sea urchin supply did not meet domes- Sea urchin aquaculture first began in Ja- tic needs, fisheries developed in North America, pan in 1968 and continues to be an important where sea urchins had previously been eradi- part of an integrated national program to de- cated to protect large kelp beds and lobster fish- velop food resources from the sea (Mottet 1980; eries (Kato and Schroeter 1985; Hart and Takagi 1986; Saito 1992b). Democratic, institu- Sheibling 1988). -
Echinodermata, Ophiuroidea)
Vol. 16: 105–113, 2012 AQUATIC BIOLOGY Published online July 19 doi: 10.3354/ab00435 Aquat Biol Slow arm regeneration in the Antarctic brittle star Ophiura crassa (Echinodermata, Ophiuroidea) Melody S. Clark*, Terri Souster British Antarctic Survey, Natural Environment Research Council, High Cross, Madingley Road, Cambridge CB3 0ET, UK ABSTRACT: Regeneration of arms in brittle stars is thought to proceed slowly in low temperature environments. Here a survey of natural arm damage and arm regeneration rates is documented in the Antarctic brittle star Ophiura crassa. This relatively small ophiuroid, a detritivore found amongst red macroalgae, displays high levels of natural arm damage and repair. This is largely thought to be due to ice damage in the shallow waters it inhabits. The time scale of arm regener- ation was measured in an aquarium-based 10 mo experiment. There was a delayed regeneration phase of 7 mo before arm growth was detectable in this species. This is 2 mo longer than the longest time previously described, which was in another Antarctic ophiuroid, Ophionotus victo- riae. The subsequent regeneration of arms in O. crassa occurred at a rate of approximately 0.16 mm mo−1. To date, this is the slowest regeneration rate known of any ophiuroid. The confir- mation that such a long delay before arm regeneration occurs in a second Antarctic species pro- vides strong evidence that this phenomenon is yet another characteristic feature of Southern Ocean species, along with deferred maturity, slowed growth and development rates. It is unclear whether delayed initial regeneration phases are adaptations to, or limitations of, low temperature environments. -
Phd Lamprianidou Fani 2
DEVELOPMENT OF A MODEL FOR EVALUATING AND OPTIMIZING THE PERFORMANCE OF INTEGRATED MULTITROPHIC AQUACULTURE (IMTA) SYSTEMS A THESIS SUBMITTED TO THE UNIVERSITY OF STIRLING FOR THE DEGREE OF DOCTOR OF PHILOSOPHY by FANI LAMPRIANIDOU UNIVERSITY OF STIRLING, INSTITUTE OF AQUACULTURE NOVEMBER 2015 In loving memory of Herta 2 ABSTRACT Earth’s population is expected to reach 9 billion by 2050. Ensuring food security for the growing world population is one of today’s society’s major challenges and responsibilities. Aquatic products have the potential to contribute significantly in the growing population’s dietary requirements. Since increasing the pressure on most natural fish stocks is now widely agreed not to be an option, the aquaculture sector needs to grow. The challenge is to increase aquaculture production without depleting natural resources or damaging the environment but also in a financially sustainable way. Integrated Multitrophic Aquaculture (IMTA) is one method of sustainable aquatic production. Integrating bioremediatory organisms that extract particulate organic matter or dissolved inorganic nutrients with monocultures of fed species has the potential of reducing the particulate and soluble waste loads from effluents, whilst producing a low-input protein source that may also increase the farm income. IMTA is a viable solution for mitigating the environmental impact of waste released from fish farms. The fish waste is exploited as a food source for lower trophic, extractive organisms giving an added value to the investment in feed. Studies up to now have shown that under experimental conditions as well as in small-scale commercial studies, various filter-feeding, deposit-feeding and grazing species can ingest fish waste particles. -
Marine Ecology Progress Series 525:127
Vol. 525: 127–141, 2015 MARINE ECOLOGY PROGRESS SERIES Published April 9 doi: 10.3354/meps11169 Mar Ecol Prog Ser Trophic niche of two co-occurring ophiuroid species in impacted coastal systems, derived from fatty acid and stable isotope analyses Aline Blanchet-Aurigny1,*, Stanislas F. Dubois1, Claudie Quéré2, Monique Guillou3, Fabrice Pernet2 1IFREMER, Laboratoire d’Ecologie Benthique, Département Océanographie et Dynamique des Ecosystèmes, Centre de Bretagne, BP70, 29280 Plouzané, France 2IFREMER, Laboratoire de Physiologie Fonctionnelle des Organismes Marins, LEMAR UMR CNRS IRD 6539, Centre de Bretagne, BP70, 29280 Plouzané, France 3Institut Universitaire Européen de la Mer, Université de Bretagne Occidentale, LEMAR UMR CNRS IRD 6539, place Nicolas Copernic, 29280 Plouzané, France ABSTRACT: The trophic niches of 2 common co-occurring ophiuroids, Ophiocomina nigra and Ophiothrix fragilis (Echinodermata, Ophiuroidea), in 2 contrasting coastal systems of Brittany (France) were investigated. We used a combination of fatty acid biomarkers derived from neutral lipids and stable isotopic compositions to explore the contributions of oceanic versus continental inputs to the ophiuroids’ diet. We investigated 2 different systems with an inshore versus offshore comparison. We sampled potential food sources and surveyed organisms every 2 mo for 1 yr. Spatio-temporal variations in stable isotopes and fatty acid profiles of the ophiuroids were gener- ally low compared to interspecific differences. Fatty acid markers showed that both ophiuroids relied on diatom inputs. However, a more δ15N-enriched isotopic composition as well as a more balanced plant- versus animal-derived fatty acid composition in O. nigra suggest that a broader range of food sources are being used by this species irrespective of location or sampling time. -
Annual Report 2000.Pdf
REPORT AND ACCOUNTS OF The Scottish Association for Marine Science for the period 1 April 1999 to 31 March 2000 The Dunstaffnage Marine Laboratory, Firth of Lorn, with the Laboratory’s larger research vessel Calanus at the pontoon (right). © John Anderson, Highland Image Contents The cold water coral Lophelia - see page 12 for report Director’s introduction 6 Geochemistry North Sea drill cuttings 8 Baltic Sea System Study 9 Restricted Exchange Environments 10 Deep-Sea Benthic Dynamics Deep-Sea macrofauna 11 Cold water coral Lophelia 12 Continental slope environmental assessment 13 Deep-Water Fish Otolith microchemistry 14 West of Scotland angler fish 15 Deep-water elasmobranchs 16 Invertebrate Biology and Mariculture Sea urchin cultivation 17 Bioaccumulation of chemotherapeutants 18 Microalgal dietary supplements 19 Amnesic shellfish poisoning 19 Marine Biotechnology Natural products research 20 Marine carotenoids 21 Microbial ecotoxicology 21 Microbial Ecology Interannual variability in Antarctic waters 22 Coastal waters of Pakistan 23 Zooplankton Dynamics 24 Clyde time-series 25 Modelling vertical migration 25 Active flux 25 Effects of delousing chemicals 26 Marine Biogenic Trace Gases Light and the dimethylsulphide cycle 27 Sediment trap investigations 28 SAMS/UHIp Marine science degree team 29 Phytoplankton and protozoan dynamics 29 Marine geomorphology of Loch Etive 30 Marine Physics 31 Biogeochemistry 32 Report from the SAMS Honorary Fellows Marine ornithology 33 Geology 34 Data Warehouse progress report 35 4 Annual Report 1999-2000