Physical Habitat and Social Conditions Across a Coral Reef Shape Spatial Patterns Of
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Petition to List Eight Species of Pomacentrid Reef Fish, Including the Orange Clownfish and Seven Damselfish, As Threatened Or Endangered Under the U.S
BEFORE THE SECRETARY OF COMMERCE PETITION TO LIST EIGHT SPECIES OF POMACENTRID REEF FISH, INCLUDING THE ORANGE CLOWNFISH AND SEVEN DAMSELFISH, AS THREATENED OR ENDANGERED UNDER THE U.S. ENDANGERED SPECIES ACT Orange Clownfish (Amphiprion percula) photo by flickr user Jan Messersmith CENTER FOR BIOLOGICAL DIVERSITY SUBMITTED SEPTEMBER 13, 2012 Notice of Petition Rebecca M. Blank Acting Secretary of Commerce U.S. Department of Commerce 1401 Constitution Ave, NW Washington, D.C. 20230 Email: [email protected] Samuel Rauch Acting Assistant Administrator for Fisheries NOAA Fisheries National Oceanographic and Atmospheric Administration 1315 East-West Highway Silver Springs, MD 20910 E-mail: [email protected] PETITIONER Center for Biological Diversity 351 California Street, Suite 600 San Francisco, CA 94104 Tel: (415) 436-9682 _____________________ Date: September 13, 2012 Shaye Wolf, Ph.D. Miyoko Sakashita Center for Biological Diversity Pursuant to Section 4(b) of the Endangered Species Act (“ESA”), 16 U.S.C. § 1533(b), Section 553(3) of the Administrative Procedures Act, 5 U.S.C. § 553(e), and 50 C.F.R.§ 424.14(a), the Center for Biological Diversity hereby petitions the Secretary of Commerce and the National Oceanographic and Atmospheric Administration (“NOAA”), through the National Marine Fisheries Service (“NMFS” or “NOAA Fisheries”), to list eight pomacentrid reef fish and to designate critical habitat to ensure their survival. The Center for Biological Diversity (“Center”) is a non-profit, public interest environmental organization dedicated to the protection of imperiled species and their habitats through science, policy, and environmental law. The Center has more than 350,000 members and online activists throughout the United States. -
Pacific Plate Biogeography, with Special Reference to Shorefishes
Pacific Plate Biogeography, with Special Reference to Shorefishes VICTOR G. SPRINGER m SMITHSONIAN CONTRIBUTIONS TO ZOOLOGY • NUMBER 367 SERIES PUBLICATIONS OF THE SMITHSONIAN INSTITUTION Emphasis upon publication as a means of "diffusing knowledge" was expressed by the first Secretary of the Smithsonian. In his formal plan for the Institution, Joseph Henry outlined a program that included the following statement: "It is proposed to publish a series of reports, giving an account of the new discoveries in science, and of the changes made from year to year in all branches of knowledge." This theme of basic research has been adhered to through the years by thousands of titles issued in series publications under the Smithsonian imprint, commencing with Smithsonian Contributions to Knowledge in 1848 and continuing with the following active series: Smithsonian Contributions to Anthropology Smithsonian Contributions to Astrophysics Smithsonian Contributions to Botany Smithsonian Contributions to the Earth Sciences Smithsonian Contributions to the Marine Sciences Smithsonian Contributions to Paleobiology Smithsonian Contributions to Zoo/ogy Smithsonian Studies in Air and Space Smithsonian Studies in History and Technology In these series, the Institution publishes small papers and full-scale monographs that report the research and collections of its various museums and bureaux or of professional colleagues in the world cf science and scholarship. The publications are distributed by mailing lists to libraries, universities, and similar institutions throughout the world. Papers or monographs submitted for series publication are received by the Smithsonian Institution Press, subject to its own review for format and style, only through departments of the various Smithsonian museums or bureaux, where the manuscripts are given substantive review. -
INTERACTIONS AMONG CORAL REEF HABITAT and the BEHAVIOR and STRESS PHYSIOLOGY of BICOLOR DAMSELFISH (STEGASTES PARTITUS) Meagan N
INTERACTIONS AMONG CORAL REEF HABITAT AND THE BEHAVIOR AND STRESS PHYSIOLOGY OF BICOLOR DAMSELFISH (STEGASTES PARTITUS) Meagan N. Schrandt A Thesis Submitted to the University of North Carolina Wilmington in Partial Fulfillment of the Requirements for the Degree of Master of Science Department of Biology and Marine Biology University of North Carolina Wilmington 2010 Approved by Advisory Committee Christopher M. Finelli John R. Godwin Frederick S. Scharf Sean C. Lema Chair Accepted by Dean, Graduate School TABLE OF CONTENTS ACKNOWLEDGEMENTS .................................................................................................v DEDICATION .................................................................................................................. vii LIST OF TABLES .......................................................................................................... viii LIST OF FIGURE ............................................................................................................. ix CHAPTER 1: SPATIAL PATTERNS OF INTRASPECIFIC BEHAVIORAL VARIATION IN THE DEMERSAL FISH STEGASTES PARTITUS ASSOCIATE WITH PHYSICAL AND SOCIAL ENVIRONMENTAL VARIATION ON A CORAL REEF .....................................................................................................................1 SUMMARY .............................................................................................................2 INTRODUCTION ...................................................................................................4 -
Stegastes Partitus (Bicolour Damselfish)
UWI The Online Guide to the Animals of Trinidad and Tobago Ecology Stegastes partitus (Bicolour Damselfish) Family: Pomacentridae (Damselfish and Clownfish) Order: Perciformes (Perch and Allied Fish) Class: Actinopterygii (Ray-finned Fish) Fig. 1. Bicolour damselfish, Stegastes partitus. [http://reefguide.org/carib/bicolordamsel.html, downloaded 14 March 2015] TRAITS. Stegastes partitus is one of the five most commonly found fishes amongst the coral reefs within Trinidad and Tobago. Length: total length in males and females is 10cm (Rainer, n.d.). Contains a total of 12 dorsal spines and 14-17 dorsal soft rays in addition to a total of 2 anal spines and 13-15 anal soft rays. A blunt snout is present on the head with a petite mouth and outsized eyes. Colour: Damsels show even distribution of black and white coloration with a yellow section separating both between the last dorsal spine and the anal fin (Fig. 1), however during mating, males under differentiation in their coloration (Schultz, 2008). There are colour variations depending on the geographic region and juveniles differ from the adults. UWI The Online Guide to the Animals of Trinidad and Tobago Ecology DISTRIBUTION. Distribution is spread throughout the western Atlantic (Fig. 2), spanning from Florida to the Bahamas and the Caribbean with possible extension to Brazil (Rainer, n.d.). They are also found along the coast of Mexico. HABITAT AND ACTIVITY. Found at a depth of approximately 30m, damsels are found in habitats bordering coral reefs, that is areas of dead coral, boulders and man-made structures where algae is most likely to grow. -
Trait Decoupling Promotes Evolutionary Diversification of The
Trait decoupling promotes evolutionary diversification of the trophic and acoustic system of damselfishes rspb.royalsocietypublishing.org Bruno Fre´de´rich1, Damien Olivier1, Glenn Litsios2,3, Michael E. Alfaro4 and Eric Parmentier1 1Laboratoire de Morphologie Fonctionnelle et Evolutive, Applied and Fundamental Fish Research Center, Universite´ de Lie`ge, 4000 Lie`ge, Belgium 2Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland Research 3Swiss Institute of Bioinformatics, Ge´nopode, Quartier Sorge, 1015 Lausanne, Switzerland 4Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA 90095, USA Cite this article: Fre´de´rich B, Olivier D, Litsios G, Alfaro ME, Parmentier E. 2014 Trait decou- Trait decoupling, wherein evolutionary release of constraints permits special- pling promotes evolutionary diversification of ization of formerly integrated structures, represents a major conceptual the trophic and acoustic system of damsel- framework for interpreting patterns of organismal diversity. However, few fishes. Proc. R. Soc. B 281: 20141047. empirical tests of this hypothesis exist. A central prediction, that the tempo of morphological evolution and ecological diversification should increase http://dx.doi.org/10.1098/rspb.2014.1047 following decoupling events, remains inadequately tested. In damselfishes (Pomacentridae), a ceratomandibular ligament links the hyoid bar and lower jaws, coupling two main morphofunctional units directly involved in both feeding and sound production. Here, we test the decoupling hypothesis Received: 2 May 2014 by examining the evolutionary consequences of the loss of the ceratomandib- Accepted: 9 June 2014 ular ligament in multiple damselfish lineages. As predicted, we find that rates of morphological evolution of trophic structures increased following the loss of the ligament. -
The Importance of Live Coral Habitat for Reef Fishes and Its Role in Key Ecological Processes
ResearchOnline@JCU This file is part of the following reference: Coker, Darren J. (2012) The importance of live coral habitat for reef fishes and its role in key ecological processes. PhD thesis, James Cook University. Access to this file is available from: http://eprints.jcu.edu.au/23714/ The author has certified to JCU that they have made a reasonable effort to gain permission and acknowledge the owner of any third party copyright material included in this document. If you believe that this is not the case, please contact [email protected] and quote http://eprints.jcu.edu.au/23714/ THE IMPORTANCE OF LIVE CORAL HABITAT FOR REEF FISHES AND ITS ROLE IN KEY ECOLOGICAL PROCESSES Thesis submitted by Darren J. Coker (B.Sc, GDipResMeth) May 2012 For the degree of Doctor of Philosophy In the ARC Centre of Excellence for Coral Reef Studies and AIMS@JCU James Cook University Townsville, Queensland, Australia Statement of access I, the undersigned, the author of this thesis, understand that James Cook University will make it available for use within the University Library and via the Australian Digital Thesis Network for use elsewhere. I understand that as an unpublished work this thesis has significant protection under the Copyright Act and I do not wish to put any further restrictions upon access to this thesis. Signature Date ii Statement of sources Declaration I declare that this thesis is my own work and has not been submitted in any form for another degree or diploma at my university or other institution of tertiary education. Information derived from the published or unpublished work of others has been acknowledged in the text and a list of references is given. -
Reef Fishes of the Bird's Head Peninsula, West
Check List 5(3): 587–628, 2009. ISSN: 1809-127X LISTS OF SPECIES Reef fishes of the Bird’s Head Peninsula, West Papua, Indonesia Gerald R. Allen 1 Mark V. Erdmann 2 1 Department of Aquatic Zoology, Western Australian Museum. Locked Bag 49, Welshpool DC, Perth, Western Australia 6986. E-mail: [email protected] 2 Conservation International Indonesia Marine Program. Jl. Dr. Muwardi No. 17, Renon, Denpasar 80235 Indonesia. Abstract A checklist of shallow (to 60 m depth) reef fishes is provided for the Bird’s Head Peninsula region of West Papua, Indonesia. The area, which occupies the extreme western end of New Guinea, contains the world’s most diverse assemblage of coral reef fishes. The current checklist, which includes both historical records and recent survey results, includes 1,511 species in 451 genera and 111 families. Respective species totals for the three main coral reef areas – Raja Ampat Islands, Fakfak-Kaimana coast, and Cenderawasih Bay – are 1320, 995, and 877. In addition to its extraordinary species diversity, the region exhibits a remarkable level of endemism considering its relatively small area. A total of 26 species in 14 families are currently considered to be confined to the region. Introduction and finally a complex geologic past highlighted The region consisting of eastern Indonesia, East by shifting island arcs, oceanic plate collisions, Timor, Sabah, Philippines, Papua New Guinea, and widely fluctuating sea levels (Polhemus and the Solomon Islands is the global centre of 2007). reef fish diversity (Allen 2008). Approximately 2,460 species or 60 percent of the entire reef fish The Bird’s Head Peninsula and surrounding fauna of the Indo-West Pacific inhabits this waters has attracted the attention of naturalists and region, which is commonly referred to as the scientists ever since it was first visited by Coral Triangle (CT). -
The Role of Threespot Damselfish (Stegastes Planifrons)
THE ROLE OF THREESPOT DAMSELFISH (STEGASTES PLANIFRONS) AS A KEYSTONE SPECIES IN A BAHAMIAN PATCH REEF A thesis presented to the faculty of the College of Arts and Sciences of Ohio University In partial fulfillment of the requirements for the degree Masters of Science Brooke A. Axline-Minotti August 2003 This thesis entitled THE ROLE OF THREESPOT DAMSELFISH (STEGASTES PLANIFRONS) AS A KEYSTONE SPECIES IN A BAHAMIAN PATCH REEF BY BROOKE A. AXLINE-MINOTTI has been approved for the Program of Environmental Studies and the College of Arts and Sciences by Molly R. Morris Associate Professor of Biological Sciences Leslie A. Flemming Dean, College of Arts and Sciences Axline-Minotti, Brooke A. M.S. August 2003. Environmental Studies The Role of Threespot Damselfish (Stegastes planifrons) as a Keystone Species in a Bahamian Patch Reef. (76 pp.) Director of Thesis: Molly R. Morris Abstract The purpose of this research is to identify the role of the threespot damselfish (Stegastes planifrons) as a keystone species. Measurements from four functional groups (algae, coral, fish, and a combined group of slow and sessile organisms) were made in various territories ranging from zero to three damselfish. Within territories containing damselfish, attack rates from the damselfish were also counted. Measures of both aggressive behavior and density of threespot damselfish were correlated with components of biodiversity in three of the four functional groups, suggesting that damselfish play an important role as a keystone species in this community. While damselfish density and measures of aggression were correlated, in some cases only density was correlated with a functional group, suggesting that damselfish influence their community through mechanisms other than behavior. -
Pomacentridae): Structural and Expression Variation in Opsin Genes
Molecular Ecology (2017) 26, 1323–1342 doi: 10.1111/mec.13968 Why UV vision and red vision are important for damselfish (Pomacentridae): structural and expression variation in opsin genes SARA M. STIEB,*† FABIO CORTESI,*† LORENZ SUEESS,* KAREN L. CARLETON,‡ WALTER SALZBURGER† and N. J. MARSHALL* *Sensory Neurobiology Group, Queensland Brain Institute, The University of Queensland, Brisbane, QLD 4072, Australia, †Zoological Institute, University of Basel, Basel 4051, Switzerland, ‡Department of Biology, The University of Maryland, College Park, MD 20742, USA Abstract Coral reefs belong to the most diverse ecosystems on our planet. The diversity in col- oration and lifestyles of coral reef fishes makes them a particularly promising system to study the role of visual communication and adaptation. Here, we investigated the evolution of visual pigment genes (opsins) in damselfish (Pomacentridae) and exam- ined whether structural and expression variation of opsins can be linked to ecology. Using DNA sequence data of a phylogenetically representative set of 31 damselfish species, we show that all but one visual opsin are evolving under positive selection. In addition, selection on opsin tuning sites, including cases of divergent, parallel, conver- gent and reversed evolution, has been strong throughout the radiation of damselfish, emphasizing the importance of visual tuning for this group. The highest functional variation in opsin protein sequences was observed in the short- followed by the long- wavelength end of the visual spectrum. Comparative gene expression analyses of a subset of the same species revealed that with SWS1, RH2B and RH2A always being expressed, damselfish use an overall short-wavelength shifted expression profile. Inter- estingly, not only did all species express SWS1 – a UV-sensitive opsin – and possess UV-transmitting lenses, most species also feature UV-reflective body parts. -
Hotspots, Extinction Risk and Conservation Priorities of Greater Caribbean and Gulf of Mexico Marine Bony Shorefishes
Old Dominion University ODU Digital Commons Biological Sciences Theses & Dissertations Biological Sciences Summer 2016 Hotspots, Extinction Risk and Conservation Priorities of Greater Caribbean and Gulf of Mexico Marine Bony Shorefishes Christi Linardich Old Dominion University, [email protected] Follow this and additional works at: https://digitalcommons.odu.edu/biology_etds Part of the Biodiversity Commons, Biology Commons, Environmental Health and Protection Commons, and the Marine Biology Commons Recommended Citation Linardich, Christi. "Hotspots, Extinction Risk and Conservation Priorities of Greater Caribbean and Gulf of Mexico Marine Bony Shorefishes" (2016). Master of Science (MS), Thesis, Biological Sciences, Old Dominion University, DOI: 10.25777/hydh-jp82 https://digitalcommons.odu.edu/biology_etds/13 This Thesis is brought to you for free and open access by the Biological Sciences at ODU Digital Commons. It has been accepted for inclusion in Biological Sciences Theses & Dissertations by an authorized administrator of ODU Digital Commons. For more information, please contact [email protected]. HOTSPOTS, EXTINCTION RISK AND CONSERVATION PRIORITIES OF GREATER CARIBBEAN AND GULF OF MEXICO MARINE BONY SHOREFISHES by Christi Linardich B.A. December 2006, Florida Gulf Coast University A Thesis Submitted to the Faculty of Old Dominion University in Partial Fulfillment of the Requirements for the Degree of MASTER OF SCIENCE BIOLOGY OLD DOMINION UNIVERSITY August 2016 Approved by: Kent E. Carpenter (Advisor) Beth Polidoro (Member) Holly Gaff (Member) ABSTRACT HOTSPOTS, EXTINCTION RISK AND CONSERVATION PRIORITIES OF GREATER CARIBBEAN AND GULF OF MEXICO MARINE BONY SHOREFISHES Christi Linardich Old Dominion University, 2016 Advisor: Dr. Kent E. Carpenter Understanding the status of species is important for allocation of resources to redress biodiversity loss. -
Juvenile Coral Reef Damselfishes Use Chemical Cues to Distinguish the Presence of Conspecific and Heterospecific Aggregations
ResearchOnline@JCU This is the Accepted Version of a paper published in the journal Behavioural Processes: Coppock, Amy G., Gardiner, Naomi M., and Jones, Geoffrey P. (2016) Sniffing out the competition? Juvenile coral reef damselfishes use chemical cues to distinguish the presence of conspecific and heterospecific aggregations. Behavioural Processes, 125. pp. 43-50. http://dx.doi.org/10.1016/j.beproc.2016.02.001 © 2016. This manuscript version is made available under the CC-BY-NC-ND 4.0 license http://creativecommons.org/licenses/by-nc-nd/4.0/ Accepted Manuscript Title: Sniffing out the competition? Juvenile coral reef damselfishes use chemical cues to distinguish the presence of conspecific and heterospecific aggregations Author: Amy G. Coppock Naomi M. Gardiner Geoffrey P. Jones PII: S0376-6357(16)30012-2 DOI: http://dx.doi.org/doi:10.1016/j.beproc.2016.02.001 Reference: BEPROC 3187 To appear in: Behavioural Processes Received date: 12-10-2015 Revised date: 31-1-2016 Accepted date: 1-2-2016 Please cite this article as: Coppock, Amy G., Gardiner, Naomi M., Jones, Geoffrey P., Sniffing out the competition? Juvenile coral reef damselfishes use chemical cues to distinguish the presence of conspecific and heterospecific aggregations.Behavioural Processes http://dx.doi.org/10.1016/j.beproc.2016.02.001 This is a PDF file of an unedited manuscript that has been accepted for publication. As a service to our customers we are providing this early version of the manuscript. The manuscript will undergo copyediting, typesetting, and review of the resulting proof before it is published in its final form. -
Concentración Y Tiempo Máximo De Exposición De Juveniles De Pargo
State of research of the Osteichthyes fish related to coral reefs in the Honduran Caribbean with catalogued records Estado del conocimiento de los peces osteíctios asociados a los arrecifes de coral en el Caribe de Honduras, con registros catalogados Anarda Isabel Salgado Ordoñez1, Julio Enrique Mérida Colindres1* & Gustavo Adolfo Cruz1 ABSTRACT Research on Honduran coral reef fish has been isolated and scattered. A list of fish species related to coral reefs was consolidated to establish a compiled database with updated taxonomy. The study was conducted between October 2017 and December 2018. Using primary and secondary sources, all potential species in the Western Atlantic were considered, and their actual presence was confirmed using catalogued records published in peer-reviewed journals that included Honduras. In addition, the specimens kept in the Museum of Natural History of Universidad Nacional Autónoma de Honduras were added. Once the list was consolidated, the taxonomic status of each species was updated based on recent literature. A total of 159 species and 76 genera were registered in 32 families. The family with the most species was Labrisomidae with 27 species (17%). Five families had more than five 5 genera registered, while four 4 were represented by more than 16 species, which is equivalent to 42% genera and 51% species. Gobiidae was represented by 10 genera (13%) and 21 species (13%), of which two 2 were endemic: Tigrigobius rubrigenis and Elacatinus lobeli. In turn, Grammatidae was represented by one endemic species Lipogramma idabeli (1.8%). The species Diodon holocanthus and Sphoeroides testudineus represent the first catalogued records for Honduras.