Morphometric Differentiation Among Haplochromine Cichlid Fish Species
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Cichlid Diversity, Speciation and Systematics: Examples from the Great African Lakes
Cichlid diversity, speciation and systematics: examples from the Great African Lakes Jos Snoeks, Africa Museum, Ichthyology- Cichlid Research Unit, Leuvensesteenweg 13, B-3080 Ter vuren,.Belgium. Tel: (32) 2 769 56 28, Fax: (32) 2 769 56 42(e-mail: [email protected]) ABSTRACT The cichlid faunas of the large East African lakes pro vide many fascina ting research tapies. They are unique because of the large number of species involved and the ir exceptional degree ofendemicity. In addition, certain taxa exhibit a substantial degree of intra~lacustrine endemism. These features al one make the Great African Lakes the largest centers of biodiversity in the vertebrate world. The numbers of cichlid species in these lakes are considered from different angles. A review is given of the data available on the tempo of their speciation, and sorne of the biological implications of its explosive character are discussed. The confusion in the definition of many genera is illustrated and the current methodology of phylogenetic research briefly commented upon. Theresults of the systematic research within the SADC/GEFLake Malawi/NyasaBiodiversity Conservation Project are discussed. It is argued that systematic research on the East African lake cichlids is entering an era of lesser chaos but increasing complexity. INTRODUCTION The main value of the cichlids of the Great African Grea ter awareness of the scientific and economi Lakes is their economie importance as a readily cal value of these fishes has led to the establishment accessible source of protein for the riparian people. In of varioüs recent research projects such as the three addition, these fishes are important to the specialized GEF (Global Environmental Facility) projects on the aquarium trade as one of the more exci ting fish groups larger lakes (Victoria, Tanganyika, Malawi/Nyasa). -
Fish, Various Invertebrates
Zambezi Basin Wetlands Volume II : Chapters 7 - 11 - Contents i Back to links page CONTENTS VOLUME II Technical Reviews Page CHAPTER 7 : FRESHWATER FISHES .............................. 393 7.1 Introduction .................................................................... 393 7.2 The origin and zoogeography of Zambezian fishes ....... 393 7.3 Ichthyological regions of the Zambezi .......................... 404 7.4 Threats to biodiversity ................................................... 416 7.5 Wetlands of special interest .......................................... 432 7.6 Conservation and future directions ............................... 440 7.7 References ..................................................................... 443 TABLE 7.2: The fishes of the Zambezi River system .............. 449 APPENDIX 7.1 : Zambezi Delta Survey .................................. 461 CHAPTER 8 : FRESHWATER MOLLUSCS ................... 487 8.1 Introduction ................................................................. 487 8.2 Literature review ......................................................... 488 8.3 The Zambezi River basin ............................................ 489 8.4 The Molluscan fauna .................................................. 491 8.5 Biogeography ............................................................... 508 8.6 Biomphalaria, Bulinis and Schistosomiasis ................ 515 8.7 Conservation ................................................................ 516 8.8 Further investigations ................................................. -
Indian and Madagascan Cichlids
FAMILY Cichlidae Bonaparte, 1835 - cichlids SUBFAMILY Etroplinae Kullander, 1998 - Indian and Madagascan cichlids [=Etroplinae H] GENUS Etroplus Cuvier, in Cuvier & Valenciennes, 1830 - cichlids [=Chaetolabrus, Microgaster] Species Etroplus canarensis Day, 1877 - Canara pearlspot Species Etroplus suratensis (Bloch, 1790) - green chromide [=caris, meleagris] GENUS Paretroplus Bleeker, 1868 - cichlids [=Lamena] Species Paretroplus dambabe Sparks, 2002 - dambabe cichlid Species Paretroplus damii Bleeker, 1868 - damba Species Paretroplus gymnopreopercularis Sparks, 2008 - Sparks' cichlid Species Paretroplus kieneri Arnoult, 1960 - kotsovato Species Paretroplus lamenabe Sparks, 2008 - big red cichlid Species Paretroplus loisellei Sparks & Schelly, 2011 - Loiselle's cichlid Species Paretroplus maculatus Kiener & Mauge, 1966 - damba mipentina Species Paretroplus maromandia Sparks & Reinthal, 1999 - maromandia cichlid Species Paretroplus menarambo Allgayer, 1996 - pinstripe damba Species Paretroplus nourissati (Allgayer, 1998) - lamena Species Paretroplus petiti Pellegrin, 1929 - kotso Species Paretroplus polyactis Bleeker, 1878 - Bleeker's paretroplus Species Paretroplus tsimoly Stiassny et al., 2001 - tsimoly cichlid GENUS Pseudetroplus Bleeker, in G, 1862 - cichlids Species Pseudetroplus maculatus (Bloch, 1795) - orange chromide [=coruchi] SUBFAMILY Ptychochrominae Sparks, 2004 - Malagasy cichlids [=Ptychochrominae S2002] GENUS Katria Stiassny & Sparks, 2006 - cichlids Species Katria katria (Reinthal & Stiassny, 1997) - Katria cichlid GENUS -
Checklist of the Cichlid Fishes of Lake Malawi (Lake Nyasa)
Checklist of the Cichlid Fishes of Lake Malawi (Lake Nyasa/Niassa) by M.K. Oliver, Ph.D. ––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––– Checklist of the Cichlid Fishes of Lake Malawi (Lake Nyasa/Niassa) by Michael K. Oliver, Ph.D. Peabody Museum of Natural History, Yale University Updated 24 June 2020 First posted June 1999 The cichlids of Lake Malawi constitute the largest vertebrate species flock and largest lacustrine fish fauna on earth. This list includes all cichlid species, and the few subspecies, that have been formally described and named. Many–several hundred–additional endemic cichlid species are known but still undescribed, and this fact must be considered in assessing the biodiversity of the lake. Recent estimates of the total size of the lake’s cichlid fauna, counting both described and known but undescribed species, range from 700–843 species (Turner et al., 2001; Snoeks, 2001; Konings, 2007) or even 1000 species (Konings 2016). Additional undescribed species are still frequently being discovered, particularly in previously unexplored isolated locations and in deep water. The entire Lake Malawi cichlid metaflock is composed of two, possibly separate, endemic assemblages, the “Hap” group and the Mbuna group. Neither has been convincingly shown to be monophyletic. Membership in one or the other, or nonendemic status, is indicated in the checklist below for each genus, as is the type species of each endemic genus. The classification and synonymies are primarily based on the Catalog of Fishes with a few deviations. All synonymized genera and species should now be listed under their senior synonym. Nearly all species are endemic to L. Malawi, in some cases extending also into the upper Shiré River including Lake Malombe and even into the middle Shiré. -
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CICHLIFORMES: Cichlidae (part 2) · 1 The ETYFish Project © Christopher Scharpf and Kenneth J. Lazara COMMENTS: v. 4.0 - 30 April 2021 Order CICHLIFORMES (part 2 of 8) Family CICHLIDAE Cichlids (part 2 of 7) Subfamily Pseudocrenilabrinae African Cichlids (Abactochromis through Greenwoodochromis) Abactochromis Oliver & Arnegard 2010 abactus, driven away, banished or expelled, referring to both the solitary, wandering and apparently non-territorial habits of living individuals, and to the authors’ removal of its one species from Melanochromis, the genus in which it was originally described, where it mistakenly remained for 75 years; chromis, a name dating to Aristotle, possibly derived from chroemo (to neigh), referring to a drum (Sciaenidae) and its ability to make noise, later expanded to embrace cichlids, damselfishes, dottybacks and wrasses (all perch-like fishes once thought to be related), often used in the names of African cichlid genera following Chromis (now Oreochromis) mossambicus Peters 1852 Abactochromis labrosus (Trewavas 1935) thick-lipped, referring to lips produced into pointed lobes Allochromis Greenwood 1980 allos, different or strange, referring to unusual tooth shape and dental pattern, and to its lepidophagous habits; chromis, a name dating to Aristotle, possibly derived from chroemo (to neigh), referring to a drum (Sciaenidae) and its ability to make noise, later expanded to embrace cichlids, damselfishes, dottybacks and wrasses (all perch-like fishes once thought to be related), often used in the names of African cichlid genera following Chromis (now Oreochromis) mossambicus Peters 1852 Allochromis welcommei (Greenwood 1966) in honor of Robin Welcomme, fisheries biologist, East African Freshwater Fisheries Research Organization (Jinja, Uganda), who collected type and supplied ecological and other data Alticorpus Stauffer & McKaye 1988 altus, deep; corpus, body, referring to relatively deep body of all species Alticorpus geoffreyi Snoeks & Walapa 2004 in honor of British carcinologist, ecologist and ichthyologist Geoffrey Fryer (b. -
Movement of Transposable Elements Contributes to Cichlid Diversity
bioRxiv preprint doi: https://doi.org/10.1101/2020.02.26.961987; this version posted February 26, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Draft manuscript BIORXIV/2020/961987 Movement of transposable elements contributes to cichlid diversity Karen L. Carleton1, Matt Conte1, Milan Malinsky2,3, Sri Pratima Nandamuri1*, Ben Sandkam1&, Joana I Meier4,5,6,%, Salome Mwaiko4,5, Ole Seehausen4,5, Thomas D Kocher1 1Department of Biology, University of Maryland, College Park MD 20742 USA 2 Wellcome Sanger Institute, Cambridge, UK. 3Zoological Institute, University of Basel, Basel, Switzerland 4Aquatic Ecology and Evolution, Institute of Ecology and Evolution, University of Bern, 3012 Bern, Switzerland 5Department of Fish Ecology and Evolution, Centre for Ecology, Evolution & Biogeochemistry, Eawag: Swiss Federal Institute of Aquatic Science and Technology, 6047 Kastanienbaum, Switzerland 6Computational and Molecular Population Genetics Lab, Institute of Ecology and Evolution, University of Bern, 3012 Bern, Switzerland *Current address: John A Moran Center, University of Utah, Salt Lake City UT USA &Current address: Department of Zoology, University of British Columbia, Vancouver, BC, Canada %Current address: Department of Biology, University of Cambridge, Cambridge UK bioRxiv preprint doi: https://doi.org/10.1101/2020.02.26.961987; this version posted February 26, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. -
Statistical Laboratory & Department of Statistics
Statistical Laboratory & Department of Statistics Annual Report July 1, 2002 to June 30, 2003 IOWA STATE UNIVERSITY OF SCIENCE AND TECHNOLOGY Table of Contents Overview........................................................................ 1 Personnel Faculty.................................................................... 2 Professional & Scientific........................................... 4 Support Staff........................................................... 4 Students Graduates................................................................ 5 Current Students ..................................................... 6 Departmental News......................................................... 9 Awards, Recognitions & Scholarships............................ 12 Graduate Program......................................................... 15 VIGRE ................................................................... 15 Undergraduate Program................................................. 17 The AGEP & Alliance Programs...................................... 18 CSSM........................................................................... 18 Consulting & Cooperative Research............................... 20 Thesis Abstracts........................................................... 25 Publications Books.................................................................... 28 Published Research................................................ 29 Book Chapters.................................................. 47 Proceedings & Reports..................................... -
Whole-Genome Sequences of Malawi Cichlids Reveal Multiple Radiations Interconnected by Gene Flow
ARTICLES https://doi.org/10.1038/s41559-018-0717-x Whole-genome sequences of Malawi cichlids reveal multiple radiations interconnected by gene flow Milan Malinsky 1,2,10*, Hannes Svardal 1,3,4,5,10, Alexandra M. Tyers6,9, Eric A. Miska 1,3,7, Martin J. Genner8, George F. Turner6 and Richard Durbin 1,3* The hundreds of cichlid fish species in Lake Malawi constitute the most extensive recent vertebrate adaptive radiation. Here we characterize its genomic diversity by sequencing 134 individuals covering 73 species across all major lineages. The aver- age sequence divergence between species pairs is only 0.1–0.25%. These divergence values overlap diversity within species, with 82% of heterozygosity shared between species. Phylogenetic analyses suggest that diversification initially proceeded by serial branching from a generalist Astatotilapia-like ancestor. However, no single species tree adequately represents all species relationships, with evidence for substantial gene flow at multiple times. Common signatures of selection on visual and oxygen transport genes shared by distantly related deep-water species point to both adaptive introgression and independent selec- tion. These findings enhance our understanding of genomic processes underlying rapid species diversification, and provide a platform for future genetic analysis of the Malawi radiation. he formation of every lake or island represents a fresh oppor- The species that comprise the radiation can be divided into seven tunity for colonization, proliferation and diversification of groups with differing ecology and morphology (see Supplementary Tliving forms. In some cases, the ecological opportunities pre- Note): (1) the rock-dwelling ‘mbuna’; (2) Rhamphochromis—typi- sented by underutilized habitats facilitate adaptive radiation—rapid cally midwater pelagic piscivores; (3) Diplotaxodon—typically deep- and extensive diversification of the descendants of the colonizing water pelagic zooplanktivores and piscivores; (4) deep-water and lineages1–3. -
Testing Conjectures About Morphological Diversity in Cichlids of Lakes Malawi and Tanganyika
Copeia, 2005(2), pp. 359±373 Testing Conjectures about Morphological Diversity in Cichlids of Lakes Malawi and Tanganyika PROSANTA CHAKRABARTY The morphological diversity of Malawi and Tanganyika cichlids has often been qualitatively described, but rarely have hypotheses based on these descriptions been tested empirically. Using landmark based geometric morphometrics, shapes are an- alyzed independent of other aspects of the body form (e.g., size). The estimation of shape disparity, the quantitative measure of the variance of these raw shapes, can then be applied in order to objectively test hypotheses about morphological diver- sity. The shape disparity within and between different groups is explored as well as how it is partitioned within the cichlid body. Tanganyika cichlids are found to have signi®cantly greater shape disparity than Malawi cichlids. Ectodini is found to have signi®cantly greater shape disparity than other Great Lake tribes. Piscivorous cich- lids are signi®cantly more disparate in shape than cichlids with other diets, and the shape disparity of the cranial region was signi®cantly greater than that of the post- cranial region. ``We begin by describing the shape of an object in Lake cichlids have been described (Bouton et the simple words of common speech: we end by al., 2002a; Wautier et al., 2002; Kassam et al., de®ning it in the precise language of mathemat- 2003a) including evidence of convergence of ics; and the one method tends to follow the other these elements between lakes (RuÈber and Ad- in strict scienti®c order and historical continui- ams, 2001; Kassam et al., 2003b); however, those ty.''±D'Arcy Thompson, 1917 (On Growth studies dealt only with patterns of morphologi- and Form) cal diversity rather than with its magnitude. -
Did Hypertrophied Lips Evolve Once Or Repeatedly in Lake Malawi Cichlid Fishes? C
Darrin Hulsey et al. BMC Evolutionary Biology (2018) 18:179 https://doi.org/10.1186/s12862-018-1296-9 RESEARCH ARTICLE Open Access Phylogenomics of a putatively convergent novelty: did hypertrophied lips evolve once or repeatedly in Lake Malawi cichlid fishes? C. Darrin Hulsey1* , Jimmy Zheng2, Roi Holzman3, Michael E. Alfaro2, Melisa Olave1 and Axel Meyer1 Abstract Background: Phylogenies provide critical information about convergence during adaptive radiation. To test whether there have been multiple origins of a distinctive trophic phenotype in one of the most rapidly radiating groups known, we used ultra-conserved elements (UCEs) to examine the evolutionary affinities of Lake Malawi cichlids lineages exhibiting greatly hypertrophied lips. Results: The hypertrophied lip cichlids Cheilochromis euchilus, Eclectochromis ornatus, Placidochromis “Mbenji fatlip”, and Placidochromis milomo areallnestedwithinthenon-mbunacladeofMalawi cichlids based on both concatenated sequence and single nucleotide polymorphism (SNP) inferred phylogenies. Lichnochromis acuticeps that exhibits slightly hypertrophied lips also appears to have evolutionary affinities to this group. However, Chilotilapia rhoadesii that lacks hypertrophied lips was recovered as nested within the species Cheilochromis euchilus. Species tree reconstructions and analyses of introgression provided largely ambiguous patterns of Malawi cichlid evolution. Conclusions: Contrary to mitochondrial DNA phylogenies, bifurcating trees based on our 1024 UCE loci supported close affinities of Lake Malawi lineages with hypertrophied lips. However, incomplete lineage sorting in Malawi tends to render these inferences more tenuous. Phylogenomic analyses will continue to provide powerful inferences about whether phenotypic novelties arose once or multiple times during adaptive radiation. Keywords: Adaptive radiation, East African Rift Lakes, Fatlips, Phylogenomics Background these adaptively radiating groups exceptionally difficult Phylogenies are critical to testing convergence. -
De Vertebrados De Moçambique Checklist of Vertebrates of Mozambique
‘Checklist’ de Vertebrados de Moçambique Checklist of Vertebrates of Mozambique Michael F. Schneider*, Victorino A. Buramuge, Luís Aliasse & Filipa Serfontein * autor para a correspondência – author for correspondence [email protected] Universidade Eduardo Mondlane Faculdade de Agronomia e Engenharia Florestal Departamento de Engenharia Florestal Maputo, Moçambique Abril de 2005 financiado por – funded by IUCN Mozambique Fundo Para a Gestão dos Recursos Naturais e Ambiente (FGRNA) Projecto No 17/2004/FGRNA/PES/C2CICLO2 Índice – Table of Contents Abreviaturas – Abbreviations..............................................................................2 Nomes vernáculos – vernacular names: .............................................................3 Referências bibliográficas – Bibliographic References ......................................4 Checklist de Mamíferos- Checklist of Mammals ................................................5 Checklist de Aves- Checklist of Birds ..............................................................38 Checklist de Répteis- Checklist of Reptiles ....................................................102 Checklist de Anfíbios- Checklist of Amphibians............................................124 Checklist de Peixes- Checklist of Fish............................................................130 1 Abreviaturas - Abbreviations * espécie introduzida – introduced species ? ocorrência duvidosa – occurrence uncertain end. espécie endémica (só avaliada para mamíferos, aves e répteis) – endemic species (only -
Landmark-Based Morphometric Analysis of the Body Shape of Two Sympatric Species, Ctenopharynx Pictus and Otopharynx Sp
Landmark-based morphometric analysis of the body shape of two sympatric species, Ctenopharynx pictus and Otopharynx sp. "heterodon nankhumba" (Teleostei: Cichlidae), from Lake Malawi Daud D. Kassam1*, Tetsu Sato2, and Kosaku Yamaoka1 1 Laboratory of Aquatic Ecology, United Graduate School of Agricultural Science, Ehime University, B 200 Monobe, Nankoku, Kochi 783-8502, Japan (e-mail: DDK, [email protected]) 2 WWF Japan, Nihonseimei Akabanebashi Building, 6 Fl., 3-1-14 Shiba, Minato-ku, Tokyo 105-0014, Japan Received: May 17, 2001 / Revised: May 22, 2002 / Accepted: June 22, 2002 Abstract Morphological differences in body shape of two sympatric benthophagous cichlid species Ichthyological from Lake Malawi, Ctenopharynx pictus and an undescribed species, Otopharynx sp. “heterodon Research nankhumba,” were investigated using geometric morphometric methods. From digitized data of land mark points on lateral profiles of fishes, the shape of each species was compared by the thin-plate spline ©The Ichthyological Society of Japan 2002 method. Statistical analyses revealed significant variation in both uniform and nonuniform compo nents of shape between the two species. From the splines generated, it was revealed that most of the Ichthyol Res (2002) 49: 340-345 significant variation between the two species occurs in the head region. Specifically, C. pictus has a longer and deeper head than Otopharynx sp. In addition, the mouth of C. pictus is larger than that of Otopharynx sp. In the trunk region, C. pictus has a shorter abdominal cavity, which may indicate possession of shorter intestines than Otopharynx sp. The variation in gross head morphology and intestinal length may reflect interspecific differences in trophic ecology, possibly facilitating the coexi stence of the two species through resource partitioning.