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Pacific Plate Biogeography, with Special Reference to Shorefishes
Pacific Plate Biogeography, with Special Reference to Shorefishes VICTOR G. SPRINGER m SMITHSONIAN CONTRIBUTIONS TO ZOOLOGY • NUMBER 367 SERIES PUBLICATIONS OF THE SMITHSONIAN INSTITUTION Emphasis upon publication as a means of "diffusing knowledge" was expressed by the first Secretary of the Smithsonian. In his formal plan for the Institution, Joseph Henry outlined a program that included the following statement: "It is proposed to publish a series of reports, giving an account of the new discoveries in science, and of the changes made from year to year in all branches of knowledge." This theme of basic research has been adhered to through the years by thousands of titles issued in series publications under the Smithsonian imprint, commencing with Smithsonian Contributions to Knowledge in 1848 and continuing with the following active series: Smithsonian Contributions to Anthropology Smithsonian Contributions to Astrophysics Smithsonian Contributions to Botany Smithsonian Contributions to the Earth Sciences Smithsonian Contributions to the Marine Sciences Smithsonian Contributions to Paleobiology Smithsonian Contributions to Zoo/ogy Smithsonian Studies in Air and Space Smithsonian Studies in History and Technology In these series, the Institution publishes small papers and full-scale monographs that report the research and collections of its various museums and bureaux or of professional colleagues in the world cf science and scholarship. The publications are distributed by mailing lists to libraries, universities, and similar institutions throughout the world. Papers or monographs submitted for series publication are received by the Smithsonian Institution Press, subject to its own review for format and style, only through departments of the various Smithsonian museums or bureaux, where the manuscripts are given substantive review. -
Length-Based Stock Assessment Area WPP
Report Code: AR_717_120820 Length-Based Stock Assessment Of A Species Complex In Deepwater Demersal Fisheries Targeting Snappers In Indonesia Fishery Management Area WPP 717 DRAFT - NOT FOR DISTRIBUTION. TNC-IFCP Technical Paper Peter J. Mous, Wawan B. IGede, Jos S. Pet AUGUST 12, 2020 THE NATURE CONSERVANCY INDONESIA FISHERIES CONSERVATION PROGRAM AR_717_120820 The Nature Conservancy Indonesia Fisheries Conservation Program Ikat Plaza Building - Blok L Jalan By Pass Ngurah Rai No.505, Pemogan, Denpasar Selatan Denpasar 80221 Bali, Indonesia Ph. +62-361-244524 People and Nature Consulting International Grahalia Tiying Gading 18 - Suite 2 Jalan Tukad Pancoran, Panjer, Denpasar Selatan Denpasar 80225 Bali, Indonesia 1 THE NATURE CONSERVANCY INDONESIA FISHERIES CONSERVATION PROGRAM AR_717_120820 Table of contents 1 Introduction 3 2 Materials and methods for data collection, analysis and reporting 7 2.1 Frame Survey . 7 2.2 Vessel Tracking and CODRS . 7 2.3 Data Quality Control . 8 2.4 Length-Frequency Distributions, CpUE, and Total Catch . 8 2.5 I-Fish Community . 29 3 Fishing grounds and traceability 33 4 Length-based assessments of Top 20 most abundant species in CODRS samples includ- ing all years in WPP 717 35 5 Discussion and conclusions 78 6 References 85 2 THE NATURE CONSERVANCY INDONESIA FISHERIES CONSERVATION PROGRAM AR_717_120820 1 Introduction This report presents a length-based assessment of multi-species and multi gear demersal fisheries targeting snappers, groupers, emperors and grunts in fisheries management area (WPP) 717, covering mostly deep western Pacific waters as well as the large Cenderawasih Bay area and coastal waters with steep slopes of the northern coast of West Papua and the Halmahera Sea to the north east of Halmahera (Figure 1.1). -
Checklist of Serranid and Epinephelid Fishes (Perciformes: Serranidae & Epinephelidae) of India
Journal of the Ocean Science Foundation 2021, Volume 38 Checklist of serranid and epinephelid fishes (Perciformes: Serranidae & Epinephelidae) of India AKHILESH, K.V. 1, RAJAN, P.T. 2, VINEESH, N. 3, IDREESBABU, K.K. 4, BINEESH, K.K. 5, MUKTHA, M. 6, ANULEKSHMI, C. 1, MANJEBRAYAKATH, H. 7, GLADSTON, Y. 8 & NASHAD M. 9 1 ICAR-Central Marine Fisheries Research Institute, Mumbai Regional Station, Maharashtra, India. Corresponding author: [email protected]; Email: [email protected] 2 Andaman & Nicobar Regional Centre, Zoological Survey of India, Port Blair, India. Email: [email protected] 3 Department of Health & Family Welfare, Government of West Bengal, India. Email: [email protected] 4 Department of Science and Technology, U.T. of Lakshadweep, Kavaratti, India. Email: [email protected] 5 Southern Regional Centre, Zoological Survey of India, Chennai, Tamil Nadu, India. Email: [email protected] 6 ICAR-Central Marine Fisheries Research Institute, Visakhapatnam Regional Centre, Andhra Pradesh, India. Email: [email protected] 7 Centre for Marine Living Resources and Ecology, Kochi, Kerala, India. Email: [email protected] 8 ICAR-Central Island Agricultural Research Institute, Port Blair, Andaman and Nicobar Islands, India. Email: [email protected] 9 Fishery Survey of India, Port Blair, Andaman and Nicobar Islands, 744101, India. Email: [email protected] Abstract We provide an updated checklist of fishes of the families Serranidae and Epinephelidae reported or listed from India, along with photographs. A total of 120 fishes in this group are listed as occurring in India based on published literature, of which 25 require further confirmation and validation. We confirm here the presence of at least 95 species in 22 genera occurring in Indian marine waters. -
229 Index of Scientific and Vernacular Names
previous page 229 INDEX OF SCIENTIFIC AND VERNACULAR NAMES EXPLANATION OF THE SYSTEM Type faces used: Italics : Valid scientific names (genera and species) Italics : Synonyms * Italics : Misidentifications (preceded by an asterisk) ROMAN (saps) : Family names Roman : International (FAO) names of species 230 Page Page A African red snapper ................................................. 79 Abalistes stellatus ............................................... 42 African sawtail catshark ......................................... 144 Abámbolo ............................................................... 81 African sicklefìsh ...................................................... 62 Abámbolo de bajura ................................................ 81 African solenette .................................................... 111 Ablennes hians ..................................................... 44 African spadefish ..................................................... 63 Abuete cajeta ........................................................ 184 African spider shrimp ............................................. 175 Abuete de Angola ................................................. 184 African spoon-nose eel ............................................ 88 Abuete negro ........................................................ 184 African squid .......................................................... 199 Abuete real ........................................................... 183 African striped grunt ................................................ -
Epinephelus Coioides) from Northern Oman
490 NOAA First U.S. Commissioner National Marine Fishery Bulletin established 1881 of Fisheries and founder Fisheries Service of Fishery Bulletin Abstract—Age, growth, and monthly reproductive characteristics were Demographic profile of an overexploited determined for the orange-spotted serranid, the orange-spotted grouper grouper (Epinephelus coioides) from northern Oman. This species is char- (Epinephelus coioides), from northern Oman acterized by a prevalence of females (1–11 years old), and males make up 1,2 6.5% of the total sample. Growth pa- Jennifer L. McIlwain rameters indicate a typical pattern Aisha Ambu-ali1 for groupers with a low growth co- Nasr Al Jardani1 efficient (K=0.135). The trajectory of 3 the von Bertalanffy growth function Andrew. R. Halford was almost linear with no evidence Hamed S. Al-Oufi4 of asymptotic growth. Estimates of David A. Feary (contact author)5 mortality revealed a low natural mortality of 0.14/year but a high Email address for contact author: [email protected] fishing mortality of 0.59/year. More alarming was the high rate of exploi- 1 Department of Marine Science and Fisheries 4 tation (0.81/year), considered unsus- Ministry of Agriculture and Fisheries College of Agricultural and Marine Sciences tainable for a slow-growing grouper. P.O. Box 1700, Muscat 111 Sultan Qaboos University The population off southern Oman Sultanate of Oman P.O. Box 34, Al-Khod 123 is diandric protogynous, and sex 5 School of Life Sciences Sultanate of Oman change takes place between 449 and University of Nottingham 748 mm in total length (TL) or over 2 Department of Environment and Agriculture University Park a period of 4–8 years. -
Assessing Species Diversity of Coral Triangle Artisanal Fisheries: a DNA Barcode Reference Library for the Shore Fishes Retailed at Ambon Harbor (Indonesia)
Received: 19 September 2019 | Revised: 30 January 2020 | Accepted: 3 February 2020 DOI: 10.1002/ece3.6128 ORIGINAL RESEARCH Assessing species diversity of Coral Triangle artisanal fisheries: A DNA barcode reference library for the shore fishes retailed at Ambon harbor (Indonesia) Gino Limmon1 | Erwan Delrieu-Trottin2,3 | Jesaya Patikawa1 | Frederik Rijoly1 | Hadi Dahruddin4 | Frédéric Busson2,5 | Dirk Steinke6 | Nicolas Hubert2 1Pusat Kemaritiman dan Kelautan, Universitas Pattimura (Maritime and Marine Abstract Science Center of Excellence), Ambon, The Coral Triangle (CT), a region spanning across Indonesia and Philippines, is home Indonesia to about 4,350 marine fish species and is among the world's most emblematic re- 2Institut de Recherche pour le Développement, UMR 226 ISEM (UM- gions in terms of conservation. Threatened by overfishing and oceans warming, the CNRS-IRD-EPHE), Montpellier, France CT fisheries have faced drastic declines over the last decades. Usually monitored 3Museum für Naturkunde, Leibniz-Institut für Evolutions-und Biodiversitätsforschung through a biomass-based approach, fisheries trends have rarely been characterized an der Humboldt-Universität zu Berlin, at the species level due to the high number of taxa involved and the difficulty to Berlin, Germany accurately and routinely identify individuals to the species level. Biomass, however, 4Division of Zoology, Research Center for Biology, Indonesian Institute of Sciences is a poor proxy of species richness, and automated methods of species identifica- (LIPI), Cibinong, Indonesia tion are required to move beyond biomass-based approaches. Recent meta-analyses 5UMR 7208 BOREA (MNHN-CNRS-UPMC- have demonstrated that species richness peaks at intermediary levels of biomass. IRD-UCBN), Muséum National d’Histoire Naturelle, Paris, France Consequently, preserving biomass is not equal to preserving biodiversity. -
Phylogenetic Relationships of Selected Genera of Lutjanidae Inferred from Mitochondrial Regions, with a Note on the Taxonomic Status of Pinjalo Pinjalo
Ciencias Marinas (2013), 39(4): 349–361 http://dx.doi.org/10.7773/cm.v39i4.2287 C M Phylogenetic relationships of selected genera of Lutjanidae inferred from mitochondrial regions, with a note on the taxonomic status of Pinjalo pinjalo Relaciones filogenéticas de algunos géneros de la familia Lutjanidae inferidas a partir de regiones mitocondriales, con una nota sobre la taxonomía de Pinjalo pinjalo Cecilia Chu1, Mohammed Rizman-Idid1,2*, Chong Ving Ching1,2 1 Institute of Biological Sciences, Faculty of Science, University of Malaya, 50603 Lembah Pantai, Kuala Lumpur, Malaysia. 2 Institute of Ocean and Earth Sciences, University of Malaya, 50603 Lembah Pantai, Kuala Lumpur, Malaysia. * Corresponding author. Email: [email protected] ABSTRACT. Phylogenetic relationships of 43 species in 11 genera, representing four subfamilies of the family Lutjanidae and two genera of the family Caesionidae, were inferred using mitochondrial DNA (mtDNA) cytochrome c oxidase subunit I (COI). Further assessment using the mtDNA control region (CR) was carried out to infer the relationship between the Indian and western Pacific types of Lutjanus russellii collected from the coast of Peninsular Malaysia. A total of 11 and 12 species were sequenced for COI and CR genes, respectively. Clade formation reflects, to some extent, the species groupings based on morphological characteristics and their biogeography. The close phylogenetic relationship between Pinjalo pinjalo and the Lutjanus red snappers (Lutjanus malabaricus and Lutjanus sebae) warrants a taxonomic revision of the former as the two genera are currently separated based on non-exclusive morphological characters. A sequence divergence of 4.2% between the Indian and western Pacific types of L. -
Use of Productivity and Susceptibility Indices to Determine the Vulnerability of a Stock: with Example Applications to Six U.S
Use of productivity and susceptibility indices to determine the vulnerability of a stock: with example applications to six U.S. fisheries. Wesley S. Patrick1, Paul Spencer2, Olav Ormseth2, Jason Cope3, John Field4, Donald Kobayashi5, Todd Gedamke6, Enric Cortés7, Keith Bigelow5, William Overholtz8, Jason Link8, and Peter Lawson9. 1NOAA, National Marine Fisheries Service, Office of Sustainable Fisheries, 1315 East- West Highway, Silver Spring, MD 20910; 2 NOAA, National Marine Fisheries Service, Alaska Fisheries Science Center, 7600 Sand Point Way, Seattle, WA 98115; 3NOAA, National Marine Fisheries Service, Northwest Fisheries Science Center, 2725 Montlake Boulevard East, Seattle, WA 98112; 4NOAA, National Marine Fisheries Service, Southwest Fisheries Science Center, 110 Shaffer Road, Santa Cruz, CA 95060; 5NOAA, National Marine Fisheries Service, Pacific Islands Fisheries Science Center, 2570 Dole Street, Honolulu, HI 96822; 6NOAA, National Marine Fisheries Service, Southeast Fisheries Science Center, 75 Virginia Beach Drive, Miami, FL 33149; 7NOAA, National Marine Fisheries Service, Southeast Fisheries Science Center, 3500 Delwood Beach Road, Panama City, FL 32408; 8NOAA, National Marine Fisheries Service, Northeast Fisheries Science Center, 166 Water Street, Woods Hole, MA 02543; 9NOAA, National Marine Fisheries Service, Northwest Fisheries Science Center, 2030 South Marine Science Drive, Newport, OR 97365. CORRESPONDING AUTHOR: Wesley S. Patrick, NOAA, National Marine Fisheries Service, Office of Sustainable Fisheries, 1315 East-West -
FISHES of the FAMILY LUTJANIDAE of Taiwanl
Bull. Inst. Zool., Academia Sinica 26(4): 279-303 (1987) FISHES OF THE FAMILY LUTJANIDAE OF TAIWANl SIN-CHE LEE. Institute of Zoology, Academia Sinica, Nankang, Taipei, Taiwan 11529 Republic of China (Received July 3, 1987) (Revision received July 11, 1987) (Accepted July 31, 1987) Sin-Che Lee (1987) Fishes of the family Lutjanidae of Taiwan. Bull. Inst. Zoology, Academia Sinica 26 (4): 279-303. Up to date, a total of 44 lutjanid species are confirmed to occur around the waters of Taiwan. They include 4 subfamilies and .10 genera: Paradicichthyinae (Symphorus, 1 species); Lutjaninae (Lutjanus, 23 species; Macolor, 1 species; Pinjalo, 2 species): Apsilinae (Paracaesio, 3 species); Etelinae (Aprion, 1 species; Aphareus, 2 species; Etelis, 3 species; Pristipomoides, 6 species; Tropidinius, 2 species). Among 44 species, Lutjanus ehrenbergii and Pristipomoides typus are not yet available and are 'provisionally excluded from this report. The remaining 42 species are provided with their distinctive characters with color photos as well as the keys for specific identification. The following 12 species namely Aphareus furcatus, A. rutilans, Etelis carbunculus E. radiosus, Lutjanus bengalensis, L. carponotatus, L. doedecanthoides, Pristipomoides auricilla, P. multidens, Tropidinius amoenus, T. zona/us, are first records from Taiwan, and Pinjalo microphthalmus is the new species. and Richardson added 5 species namely Fishes of Lutjanidae or snappers have Lutjanus fuscescens (=L. russelli) , L. quinque the dorsal fin continuou·s or with a shallow lineatus (L. spilurus is the synonym of it), L. notch, with 10-12 spines and 10-17 soft rays; kasmira,. L. lineolatus (=L. lutjanus) , and L. anal fin wi th 3 s pi nes and 7-11 soft rays; rivulatus. -
Genetic Analyses and Simulations of Larval Dispersal Reveal Distinct
Hindawi Publishing Corporation Journal of Marine Biology Volume 2011, Article ID 765353, 11 pages doi:10.1155/2011/765353 Research Article Genetic Analyses and Simulations of Larval Dispersal Reveal Distinct Populations and Directional Connectivity across the Range of the Hawaiian Grouper (Epinephelus quernus) Malia Ana J. Rivera,1 Kimberly R. Andrews,1 Donald R. Kobayashi,2 Johanna L. K. Wren,1, 3 Christopher Kelley,4 George K. Roderick,5 and Robert J. Toonen1 1 Hawai‘i Institute of Marine Biology, University of Hawai‘i at Manoa,¯ P.O. Box 1346, Kane‘ohe,¯ HI 96744, USA 2 Pacific Islands Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, 2570 Dole Street, Honolulu, HI 96822, USA 3 Department of Oceanography, University of Hawai‘i at Manoa,¯ 1000 Pope Road, Honolulu, HI 96822, USA 4 Hawai‘i Undersea Research Laboratory, University of Hawai‘i at Manoa,¯ 1000 Pope Road, MSB 303, Honolulu, HI 96822, USA 5 Department of Environmental Science, Policy and Management, University of California, 130 Mulford Hall, MC 3114, Berkeley, CA 94708-3114, USA CorrespondenceshouldbeaddressedtoM.A.J.Rivera,[email protected] Received 16 July 2010; Accepted 27 September 2010 Academic Editor: Benjamin S. Halpern Copyright © 2011 Malia Ana J. Rivera et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Integration of ecological and genetic data to study patterns of biological connectivity can aid in ecosystem-based management. Here we investigated connectivity of the Hawaiian grouper Epinephelus quernus, a species of management concern within the Main Hawaiian Islands (MHI), by comparing genetic analyses with simulated larval dispersal patterns across the species range in the Hawaiian Archipelago and Johnston Atoll. -
Reef Fishes of the Bird's Head Peninsula, West
Check List 5(3): 587–628, 2009. ISSN: 1809-127X LISTS OF SPECIES Reef fishes of the Bird’s Head Peninsula, West Papua, Indonesia Gerald R. Allen 1 Mark V. Erdmann 2 1 Department of Aquatic Zoology, Western Australian Museum. Locked Bag 49, Welshpool DC, Perth, Western Australia 6986. E-mail: [email protected] 2 Conservation International Indonesia Marine Program. Jl. Dr. Muwardi No. 17, Renon, Denpasar 80235 Indonesia. Abstract A checklist of shallow (to 60 m depth) reef fishes is provided for the Bird’s Head Peninsula region of West Papua, Indonesia. The area, which occupies the extreme western end of New Guinea, contains the world’s most diverse assemblage of coral reef fishes. The current checklist, which includes both historical records and recent survey results, includes 1,511 species in 451 genera and 111 families. Respective species totals for the three main coral reef areas – Raja Ampat Islands, Fakfak-Kaimana coast, and Cenderawasih Bay – are 1320, 995, and 877. In addition to its extraordinary species diversity, the region exhibits a remarkable level of endemism considering its relatively small area. A total of 26 species in 14 families are currently considered to be confined to the region. Introduction and finally a complex geologic past highlighted The region consisting of eastern Indonesia, East by shifting island arcs, oceanic plate collisions, Timor, Sabah, Philippines, Papua New Guinea, and widely fluctuating sea levels (Polhemus and the Solomon Islands is the global centre of 2007). reef fish diversity (Allen 2008). Approximately 2,460 species or 60 percent of the entire reef fish The Bird’s Head Peninsula and surrounding fauna of the Indo-West Pacific inhabits this waters has attracted the attention of naturalists and region, which is commonly referred to as the scientists ever since it was first visited by Coral Triangle (CT). -
Appendices Appendices
APPENDICES APPENDICES APPENDIX 1 – PUBLICATIONS SCIENTIFIC PAPERS Aidoo EN, Ute Mueller U, Hyndes GA, and Ryan Braccini M. 2015. Is a global quantitative KL. 2016. The effects of measurement uncertainty assessment of shark populations warranted? on spatial characterisation of recreational fishing Fisheries, 40: 492–501. catch rates. Fisheries Research 181: 1–13. Braccini M. 2016. Experts have different Andrews KR, Williams AJ, Fernandez-Silva I, perceptions of the management and conservation Newman SJ, Copus JM, Wakefield CB, Randall JE, status of sharks. Annals of Marine Biology and and Bowen BW. 2016. Phylogeny of deepwater Research 3: 1012. snappers (Genus Etelis) reveals a cryptic species pair in the Indo-Pacific and Pleistocene invasion of Braccini M, Aires-da-Silva A, and Taylor I. 2016. the Atlantic. Molecular Phylogenetics and Incorporating movement in the modelling of shark Evolution 100: 361-371. and ray population dynamics: approaches and management implications. Reviews in Fish Biology Bellchambers LM, Gaughan D, Wise B, Jackson G, and Fisheries 26: 13–24. and Fletcher WJ. 2016. Adopting Marine Stewardship Council certification of Western Caputi N, de Lestang S, Reid C, Hesp A, and How J. Australian fisheries at a jurisdictional level: the 2015. Maximum economic yield of the western benefits and challenges. Fisheries Research 183: rock lobster fishery of Western Australia after 609-616. moving from effort to quota control. Marine Policy, 51: 452-464. Bellchambers LM, Fisher EA, Harry AV, and Travaille KL. 2016. Identifying potential risks for Charles A, Westlund L, Bartley DM, Fletcher WJ, Marine Stewardship Council assessment and Garcia S, Govan H, and Sanders J.