The Metabolite α-KG Induces GSDMC-Dependent Pyroptosis Through Death Receptor 6-Activated Caspase-8

Total Page:16

File Type:pdf, Size:1020Kb

The Metabolite α-KG Induces GSDMC-Dependent Pyroptosis Through Death Receptor 6-Activated Caspase-8 www.nature.com/cr www.cell-research.com ARTICLE OPEN The metabolite α-KG induces GSDMC-dependent pyroptosis through death receptor 6-activated caspase-8 Jia-yuan Zhang1, Bo Zhou1, Ru-yue Sun1, Yuan-li Ai1, Kang Cheng1, Fu-nan Li2, Bao-rui Wang2, Fan-jian Liu1, Zhi-hong Jiang1, Wei-jia Wang1, Dawang Zhou 1, Hang-zi Chen 1 and Qiao Wu 1 Pyroptosis is a form of regulated cell death mediated by gasdermin family members, among which the function of GSDMC has not been clearly described. Herein, we demonstrate that the metabolite α-ketoglutarate (α-KG) induces pyroptosis through caspase-8- mediated cleavage of GSDMC. Treatment with DM-αKG, a cell-permeable derivative of α-KG, elevates ROS levels, which leads to oxidation of the plasma membrane-localized death receptor DR6. Oxidation of DR6 triggers its endocytosis, and then recruits both pro-caspase-8 and GSDMC to a DR6 receptosome through protein-protein interactions. The DR6 receptosome herein provides a platform for the cleavage of GSDMC by active caspase-8, thereby leading to pyroptosis. Moreover, this α-KG-induced pyroptosis could inhibit tumor growth and metastasis in mouse models. Interestingly, the efficiency of α-KG in inducing pyroptosis relies on an acidic environment in which α-KG is reduced by MDH1 and converted to L-2HG that further boosts ROS levels. Treatment with lactic acid, the end product of glycolysis, builds an improved acidic environment to facilitate more production of L-2HG, which makes the originally pyroptosis-resistant cancer cells more susceptible to α-KG-induced pyroptosis. This study not only illustrates a pyroptotic pathway linked with metabolites but also identifies an unreported principal axis extending from ROS-initiated DR6 endocytosis to caspase-8-mediated cleavage of GSDMC for potential clinical application in tumor therapy. 1234567890();,: Cell Research (2021) 31:980–997; https://doi.org/10.1038/s41422-021-00506-9 INTRODUCTION treatment with chemotherapeutic drugs, activated caspase-3 Cell death is a very complicated and important biological process cleaves GSDME to induce pyroptosis in GSDME-expressing cells. that contributes to the regulation of various physiological Unfortunately, GSDME is silenced in most tumor cells but is highly functions and maintenance of body homeostasis. Dysregulation expressed in normal cells and tissues, which leads to strong of cell death programming leads to the occurrence of various induction of pyroptosis in normal tissues upon the administration diseases, including cancers. Therefore, further understanding the of chemotherapeutic drugs.5 Therefore, specifically inducing functional mechanism and signaling pathways involved in cell pyroptosis in tumor cells while avoiding normal cell and tissue death would benefit the treatment of various diseases. Pyroptosis damage has become a key issue. We previously demonstrated is a form of regulated cell death mediated by gasdermin family that iron reinforces the effect of ROS-inducing drugs in boosting proteins.1 In humans, the gasdermin family consists of six ROS levels, leading to the activation of GSDME and pyroptosis of members: GSDM-A, -B, -C -D, -E (also called DFNA5), and DFNB59. melanoma cells. Hence, iron supplementation was used as a Mice lack GSDMB but express three GSDMAs (mGSDMA1–3) and sensitizer in combination with clinical drugs to inhibit the growth four GSDMCs (mGSDMC1–4).2 Structurally, all gasdermin family and metastasis of melanoma in a mouse model, with decreased members except DFNB59 have an N-terminal pore-forming toxicity.7 Although the currently limited research findings cannot domain, a C-terminal autoinhibitory domain, and a loop domain fundamentally explain the two outcomes of pyroptosis in normal that links the N- and C-terminal domains. Protease-mediated and tumor tissues, targeting pyroptosis for tumor therapy may be cleavage within the linker loop releases the N-terminal domain, a good strategy, because pyroptosis of tumor cells would not only which then oligomerizes to form nonselective pores at the plasma overcome the apoptosis resistance of tumor cells but also trigger membrane and causes membrane permeability changes, cell antitumor immunity.8–11 However, the specific pyroptosis inducers swelling and membrane rupture. For example, inflammasome- in tumors are largely unknown. activated caspase-1/4/5/11 cleave GSDMD to produce an N- Cell fate is closely associated with metabolic homeostasis. α- terminal fragment that triggers pyroptosis,2–4 while proapoptotic Ketoglutarate (α-KG) is an essential metabolite in the tricarboxylic stimuli activate caspase-3, which cleaves GSDME to induce acid (TCA) cycle and plays a significant role in physiological pyroptosis.5,6 processes, including lipid biosynthesis, oxidative stress reduction, The functions of pyroptosis have become a hot spot in cancer protein modification, autophagy, and cell death. Several studies research. The Shao group found that GSDME-mediated pyroptosis have shown that α-KG is a prospective antitumor agent. For is associated with the side effects of chemotherapy. Following example, α-KG suppresses breast cancer oncogenesis by switching 1State Key Laboratory of Cellular Stress Biology, School of Life Sciences, Xiamen University, Xiamen, Fujian, China and 2School of Pharmaceutical Sciences, Xiamen University, Xiamen, Fujian, China Correspondence: Hang-zi Chen ([email protected]) or Qiao Wu ([email protected]) These authors contributed equally: Jia-yuan Zhang, Bo Zhou, Ru-yue Sun, Yuan-li Ai Received: 17 September 2020 Accepted: 2 April 2021 Published online: 19 May 2021 © The Author(s) 2021 Article 981 metabolism from glycolysis to oxidative phosphorylation.12 concluded that α-KG specifically induces GSDMC-dependent Accumulated α-KG blocks malignant progression by driving tumor pyroptosis. cell differentiation in p53-null tumors.13 Moreover, increasing the Treatment with Z-VAD, a pancaspase inhibitor, suppressed DM- α-KG/succinate ratio by disrupting mitochondrial complex I αKG-induced GSDMC cleavage, thereby ameliorating the pyropto- suppresses tumor growth.14,15 However, the role of α-KG in tic cell morphology and reducing LDH release in HeLa, SGC-7901 pyroptosis remains unreported. and B16 cells (Supplementary information, Fig. S1i, j). These results The aim of this study was to investigate the molecular strongly suggest that caspases might be involved in GSDMC mechanism and signaling pathway of α-KG in pyroptotic cell cleavage. To determine the participation of caspase subtypes, death. We demonstrated that α-KG is promiscuously reduced to different exogenous recombinant caspases were incubated with another metabolite, L-2HG, by the metabolic enzyme MDH1 in an GSDMC proteins that were isolated from GSDMC-overexpressing acidic environment, which then increases ROS levels to induce the human embryonic kidney (HEK293T) cells. The results revealed oxidation and internalization of the plasma membrane-localized that GSDMC was effectively cleaved by caspase-8 and -9 in vitro death receptor DR6. Internalized DR6 further recruits both pro- (Supplementary information, Fig. S1k). However, DM-αKG treat- caspase-8 and GSDMC to the DR6 receptosome that provides a ment activated only caspase-8 but not caspase-9 in HeLa cells in a platform for the cleavage of GSDMC by active caspase-8, thereby time- and dose-dependent manner (Supplementary information, inducing pyroptosis. This pyroptosis was sufficient for the Fig. S1l), suggesting the involvement of caspase-8 but not inhibition of tumor growth and metastasis in mouse models. caspase-9 in α-KG-induced pyroptosis. Indeed, knockdown of Collectively, this study not only identifies the key node protein caspase-8 but not caspase-9 prevented the initiation of DM-αKG- (DR6), pyroptosis initiator (caspase-8), and executor (GSDMC) in induced pyroptosis in HeLa cells (Fig. 1f, g and Supplementary the α-KG-induced pyroptotic pathway but also provides an information, Fig. S1d, m). The involvement of caspase-8 in DM- important research direction for clinical tumor treatment via αKG-induced pyroptosis was also observed in SGC-7901 and B16 pyroptosis induction. cells (Supplementary information, Fig. S1n). In caspase-8 knock- down HeLa cells, re-expression of wild-type caspase-8 (CASP8WT) but not its enzymatically dead mutant (CASP8C360S)18 promoted RESULTS DM-αKG-induced GSDMC cleavage and pyroptosis (Fig. 1h and α-KG induces pyroptosis through caspase-8-mediated cleavage of Supplementary information, Fig. S1o). Clearly, active caspase-8 is GSDMC required for the cleavage of GSDMC and the subsequent The metabolite α-ketoglutarate (α-KG), a key metabolite in the TCA pyroptosis in response to α-KG stimulation. cycle, plays important roles in both metabolic and cellular Caspase cleaves target proteins downstream of an Asp pathways.16 Since exogenously added α-KG cannot pass through residue. Given that the in-gel migration of the N-terminal the cell membrane, we used dimethyl-α-ketoglutarate (DM-αKG, a cleavage product of GSDMC indicated that its molecular weight cell-permeable analog of α-KG) to treat HeLa cervical carcinoma is approximately 35 kDa (Fig. 1c), the potential Asp site of α-KG- cells and unexpectedly found that DM-αKG significantly induced induced caspase-8-mediated cleavage in GSDMC may lie in a cell death with typical morphological features of pyroptosis, i.e., sequence of between 200 and 300 amino acid residues. To cell swelling and large areas of plasma membrane blebbing investigate this possibility, Asp231, Asp232, Asp233, Asp240 and (Fig. 1a, left;
Recommended publications
  • Integrating Single-Step GWAS and Bipartite Networks Reconstruction Provides Novel Insights Into Yearling Weight and Carcass Traits in Hanwoo Beef Cattle
    animals Article Integrating Single-Step GWAS and Bipartite Networks Reconstruction Provides Novel Insights into Yearling Weight and Carcass Traits in Hanwoo Beef Cattle Masoumeh Naserkheil 1 , Abolfazl Bahrami 1 , Deukhwan Lee 2,* and Hossein Mehrban 3 1 Department of Animal Science, University College of Agriculture and Natural Resources, University of Tehran, Karaj 77871-31587, Iran; [email protected] (M.N.); [email protected] (A.B.) 2 Department of Animal Life and Environment Sciences, Hankyong National University, Jungang-ro 327, Anseong-si, Gyeonggi-do 17579, Korea 3 Department of Animal Science, Shahrekord University, Shahrekord 88186-34141, Iran; [email protected] * Correspondence: [email protected]; Tel.: +82-31-670-5091 Received: 25 August 2020; Accepted: 6 October 2020; Published: 9 October 2020 Simple Summary: Hanwoo is an indigenous cattle breed in Korea and popular for meat production owing to its rapid growth and high-quality meat. Its yearling weight and carcass traits (backfat thickness, carcass weight, eye muscle area, and marbling score) are economically important for the selection of young and proven bulls. In recent decades, the advent of high throughput genotyping technologies has made it possible to perform genome-wide association studies (GWAS) for the detection of genomic regions associated with traits of economic interest in different species. In this study, we conducted a weighted single-step genome-wide association study which combines all genotypes, phenotypes and pedigree data in one step (ssGBLUP). It allows for the use of all SNPs simultaneously along with all phenotypes from genotyped and ungenotyped animals. Our results revealed 33 relevant genomic regions related to the traits of interest.
    [Show full text]
  • 1 INVITED REVIEW Mechanisms of Gasdermin Family Members in Inflammasome Signaling and Cell Death Shouya Feng,* Daniel Fox,* Si M
    INVITED REVIEW Mechanisms of Gasdermin family members in inflammasome signaling and cell death Shouya Feng,* Daniel Fox,* Si Ming Man Department of Immunology and Infectious Disease, The John Curtin School of Medical Research, The Australian National University, Canberra, Australia. * S.F. and D.F. equally contributed to this work Correspondence to Si Ming Man: Department of Immunology and Infectious Disease, The John Curtin School of Medical Research, The Australian National University, Canberra, 2601, Australia. [email protected] 1 Abstract The Gasdermin (GSDM) family consists of Gasdermin A (GSDMA), Gasdermin B (GSDMB), Gasdermin C (GSDMC), Gasdermin D (GSDMD), Gasdermin E (GSDME) and Pejvakin (PJVK). GSDMD is activated by inflammasome-associated inflammatory caspases. Cleavage of GSDMD by human or mouse caspase-1, human caspase-4, human caspase-5, and mouse caspase-11, liberates the N-terminal effector domain from the C-terminal inhibitory domain. The N-terminal domain oligomerizes in the cell membrane and forms a pore of 10-16 nm in diameter, through which substrates of a smaller diameter, such as interleukin (IL)-1β and IL- 18, are secreted. The increasing abundance of membrane pores ultimately leads to membrane rupture and pyroptosis, releasing the entire cellular content. Other than GSDMD, the N-terminal domain of all GSDMs, with the exception of PJVK, have the ability to form pores. There is evidence to suggest that GSDMB and GSDME are cleaved by apoptotic caspases. Here, we review the mechanistic functions of GSDM proteins with respect to their expression and signaling profile in the cell, with more focused discussions on inflammasome activation and cell death.
    [Show full text]
  • 1 1 2 3 Genome-Wide Association Study of Body Fat Distribution
    bioRxiv preprint doi: https://doi.org/10.1101/207498; this version posted July 13, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 2 3 4 Genome-Wide Association Study of Body Fat Distribution identifies Novel 5 Adiposity Loci and Sex-Specific Genetic Effects 6 7 Mathias Rask-Andersen*1, Torgny Karlsson1, Weronica E Ek1, Åsa Johansson*1 8 9 10 1Department of Immunology, Genetics and Pathology, Science for Life Laboratory, 11 Uppsala University. Box 256, 751 05, Uppsala, Sweden. 12 *Corresponding authors: [email protected] and 13 [email protected] 14 15 16 17 18 1 bioRxiv preprint doi: https://doi.org/10.1101/207498; this version posted July 13, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 19 Body mass and body fat composition are of clinical interest due to their links to 20 cardiovascular- and metabolic diseases. Fat stored in the trunk has been 21 suggested as more pathogenic compared to fat stored in other compartments of 22 the body. In this study, we performed genome-wide association studies (GWAS) 23 for the proportion of body fat distributed to the arms, legs and trunk estimated 24 from segmental bio-electrical impedance analysis (sBIA) for 362,499 individuals 25 from the UK Biobank. A total of 97 loci, were identified to be associated with 26 body fat distribution, 40 of which have not previously been associated with an 27 anthropometric trait.
    [Show full text]
  • TBR1 Regulates Autism Risk Genes in the Developing Neocortex
    Downloaded from genome.cshlp.org on October 6, 2021 - Published by Cold Spring Harbor Laboratory Press Research TBR1 regulates autism risk genes in the developing neocortex James H. Notwell,1 Whitney E. Heavner,2,3 Siavash Fazel Darbandi,4 Sol Katzman,5 William L. McKenna,6 Christian F. Ortiz-Londono,6 David Tastad,6 Matthew J. Eckler,6 John L.R. Rubenstein,4 Susan K. McConnell,3 Bin Chen,6 and Gill Bejerano1,2,7 1Department of Computer Science, 2Department of Developmental Biology, 3Department of Biology, Stanford University, Stanford, California 94305, USA; 4Department of Psychiatry, University of California, San Francisco, San Francisco, California, 94143 USA; 5Center for Biomolecular Science and Engineering, University of California, Santa Cruz, Santa Cruz, California 95064 USA; 6Department of Molecular, Cell, and Developmental Biology, University of California, Santa Cruz, Santa Cruz, California 95064, USA; 7Division of Medical Genetics, Department of Pediatrics, Stanford University, Stanford, California 94305, USA Exome sequencing studies have identified multiple genes harboring de novo loss-of-function (LoF) variants in individuals with autism spectrum disorders (ASD), including TBR1, a master regulator of cortical development. We performed ChIP- seq for TBR1 during mouse cortical neurogenesis and show that TBR1-bound regions are enriched adjacent to ASD genes. ASD genes were also enriched among genes that are differentially expressed in Tbr1 knockouts, which together with the ChIP-seq data, suggests direct transcriptional regulation. Of the nine ASD genes examined, seven were misexpressed in the cortices of Tbr1 knockout mice, including six with increased expression in the deep cortical layers. ASD genes with adjacent cortical TBR1 ChIP-seq peaks also showed unusually low levels of LoF mutations in a reference human population and among Icelanders.
    [Show full text]
  • Co-Expression Network and Prognosis Analyses of Pyroptosis-Related Genes in Non-Small Cell Lung Cancer
    Co-expression Network and Prognosis Analyses of Pyroptosis-related Genes in Non-small Cell Lung Cancer Zixiao Liu Xinyang Normal University Xudong Liu Xinyang Normal University Yu Zhang Xinyang Normal University Yongjie Zhou Xinyang Normal University Shuaibin Lian ( [email protected] ) Xinyang Normal University Lei Wang Xinyang Normal University Research Article Keywords: Pyrolysis, Gasdermin family, NSCLC, Co-expression network analysis, Small molecules Posted Date: June 24th, 2021 DOI: https://doi.org/10.21203/rs.3.rs-627404/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 1/23 Abstract Lung cancer is very dicult to diagnose in the its early stages because of its initial asymptomatic characteristics. In recent years, pyrolysis has been shown identied as a novel type of programmed cell death with inammation mediated by the gasdermin family. In this study, 33 differentially-expressed pyroptosis-related genes were commonly identied in both lung adenocarcinoma (LUAD) and lung squamous cell carcinoma (LUSC) patients. Tumor-related gasdermin family genes that were signicantly differentially expressed in non-small cell lung cancer (NSCLC) tissues were identied by our co-expression network analysis. Among them, the mRNA level of GSDMB gene had signicant impacts on tumor staging and survival rates of NSCLC patients. Therefore, this gene is a potential new therapeutic target for the treatment of NSCLC. In addition, the high expression levels of GSDMC/D were signicantly correlated with the low overall survival (OS), progression-free survival (FP) and post-progression survival (PPS) of NSCLC patients. Therefore, this gene is a potential oncogene for NSCLC.
    [Show full text]
  • Genome-Wide Analysis of 944 133 Individuals Provides Insights Into
    Colon Original research Genome- wide analysis of 944 133 individuals Gut: first published as 10.1136/gutjnl-2020-323868 on 22 April 2021. Downloaded from provides insights into the etiology of haemorrhoidal disease Tenghao Zheng ,1,2 David Ellinghaus ,3,4 Simonas Juzenas ,3,5 François Cossais,6 Greta Burmeister,7 Gabriele Mayr,3 Isabella Friis Jørgensen,4 Maris Teder- Laving,8 Anne Heidi Skogholt,9 Sisi Chen,10 Peter R Strege,10 Go Ito,3,11 Karina Banasik,4 Thomas Becker,12 Frank Bokelmann,13 Søren Brunak,4 Stephan Buch,14 Hartmut Clausnitzer,15 Christian Datz ,16 DBDS Consortium, Frauke Degenhardt,3 Marek Doniec,17 Christian Erikstrup,18 Tõnu Esko,8 Michael Forster ,3 Norbert Frey,19,20,21 Lars G Fritsche,22 9 23,24 25 7 ► Additional supplemental Maiken Elvestad Gabrielsen, Tobias Gräßle, Andrea Gsur , Justus Gross, material is published online Jochen Hampe ,14,26 Alexander Hendricks,7 Sebastian Hinz,7 Kristian Hveem,9 only. To view, please visit the 27,28 15 29 journal online (http:// dx. doi. org/ Johannes Jongen, Ralf Junker, Tom Hemming Karlsen, 10. 1136/ gutjnl- 2020- 323868). Georg Hemmrich- Stanisak,3 Wolfgang Kruis,30 Juozas Kupcinskas,31 For numbered affiliations see 27,28,32 3,33 34 end of article. Tilman Laubert, Philip C Rosenstiel, Christoph Röcken , Matthias Laudes,35 Fabian H Leendertz,23,24 Wolfgang Lieb,36 Verena Limperger,15 Correspondence to 37 38 12,39 Prof Mauro D’Amato, Nikolaos Margetis, Kerstin Mätz- Rensing, Christopher Georg Németh, Gastrointestinal Genetics Lab, Eivind Ness- Jensen ,9,40,41 Ulrike Nowak- Göttl,15 Anita Pandit,22 CIC bioGUNE - BRTA, Bizkaia 42 27,28 14,26 Science and Technology Park, Ole Birger Pedersen, Hans Günter Peleikis, Kenneth Peuker, Building 801A, 48160 Derio, 4 3 43 Spain; mdamato@ cicbiogune.
    [Show full text]
  • Overexpression of GSDMC Is a Prognostic Factor for Predicting a Poor Outcome in Lung Adenocarcinoma
    360 MOLECULAR MEDICINE REPORTS 21: 360-370, 2020 Overexpression of GSDMC is a prognostic factor for predicting a poor outcome in lung adenocarcinoma JIE WEI1,2, ZHIJIE XU3, XI CHEN1,2, XIANG WANG1,2, SHUANGSHUANG ZENG1,2, LONG QIAN1,2, XUE YANG1,2, CHUNLIN OU3, WEI LIN3, ZHICHENG GONG1,2 and YUANLIANG YAN1,2 1Department of Pharmacy; 2National Clinical Research Center for Geriatric Disorders; 3Department of Pathology, Xiangya Hospital, Central South University, Changsha, Hunan 410008, P.R. China Received June 11, 2019; Accepted October 31, 2019 DOI: 10.3892/mmr.2019.10837 Abstract. The gasdermin (GSDM) superfamily has been malignancies. For the purposes of treatment, lung cancer is demonstrated to consist of several important molecules that classified into several histological subtypes, including small modulate multifunctional signal processes, such as cell pyrop- cell lung cancer (13% of cases) or non-small cell lung cancer tosis. In this research, the roles of the GSDM superfamily on (NSCLC, 83% of cases) (1,2). In most countries, lung adeno- the occurrence and prognosis of lung adenocarcinoma (LUAD) carcinoma (LUAD) is the most frequent histological NSCLC were evaluated using integrative bioinformatic analyses and subtype. Despite comprehensive treatment in clinical practice, in vitro methods. Here, data from several bioinformatic plat- most LUAD patients at present are commonly diagnosed at forms revealed that GSDMC is significantly upregulated in late stages, and meanwhile receive insufficient treatment LUAD tissues and cell lines. Real‑time fluorescence quantita- efficacy (3). Therefore, identification of the novel biomarkers tive PCR (qPCR) demonstrated that GSDMC was obviously and molecular events associated with LUAD biology would upregulated in radio-resistant LUAD cells, compared with provide novel insights for developing a more rational thera- their parental cells.
    [Show full text]
  • Identification of Novel Regulatory Genes in Acetaminophen
    IDENTIFICATION OF NOVEL REGULATORY GENES IN ACETAMINOPHEN INDUCED HEPATOCYTE TOXICITY BY A GENOME-WIDE CRISPR/CAS9 SCREEN A THESIS IN Cell Biology and Biophysics and Bioinformatics Presented to the Faculty of the University of Missouri-Kansas City in partial fulfillment of the requirements for the degree DOCTOR OF PHILOSOPHY By KATHERINE ANNE SHORTT B.S, Indiana University, Bloomington, 2011 M.S, University of Missouri, Kansas City, 2014 Kansas City, Missouri 2018 © 2018 Katherine Shortt All Rights Reserved IDENTIFICATION OF NOVEL REGULATORY GENES IN ACETAMINOPHEN INDUCED HEPATOCYTE TOXICITY BY A GENOME-WIDE CRISPR/CAS9 SCREEN Katherine Anne Shortt, Candidate for the Doctor of Philosophy degree, University of Missouri-Kansas City, 2018 ABSTRACT Acetaminophen (APAP) is a commonly used analgesic responsible for over 56,000 overdose-related emergency room visits annually. A long asymptomatic period and limited treatment options result in a high rate of liver failure, generally resulting in either organ transplant or mortality. The underlying molecular mechanisms of injury are not well understood and effective therapy is limited. Identification of previously unknown genetic risk factors would provide new mechanistic insights and new therapeutic targets for APAP induced hepatocyte toxicity or liver injury. This study used a genome-wide CRISPR/Cas9 screen to evaluate genes that are protective against or cause susceptibility to APAP-induced liver injury. HuH7 human hepatocellular carcinoma cells containing CRISPR/Cas9 gene knockouts were treated with 15mM APAP for 30 minutes to 4 days. A gene expression profile was developed based on the 1) top screening hits, 2) overlap with gene expression data of APAP overdosed human patients, and 3) biological interpretation including assessment of known and suspected iii APAP-associated genes and their therapeutic potential, predicted affected biological pathways, and functionally validated candidate genes.
    [Show full text]
  • 04Ecdc133ffa10914a31c503e3c
    RESEARCH ARTICLE Gasdermin C Is Upregulated by Inactivation of Transforming Growth Factor β Receptor Type II in the Presence of Mutated Apc, Promoting Colorectal Cancer Proliferation Masashi Miguchi1, Takao Hinoi1,2*, Manabu Shimomura1, Tomohiro Adachi1, Yasufumi Saito1, Hiroaki Niitsu1, Masatoshi Kochi1, Haruki Sada1, Yusuke Sotomaru3, Tsuneo Ikenoue4, Kunitoshi Shigeyasu5, Kohji Tanakaya5, Yasuhiko Kitadai6,7, Kazuhiro Sentani8, Naohide Oue8, Wataru Yasui8, Hideki Ohdan1 a11111 1 Department of Gastroenterological and Transplant Surgery, Applied Life Sciences, Institute of Biomedical & Health Sciences, Hiroshima University, Hiroshima, Japan, 2 Department of Surgery, Institute for Clinical Research, National Hospital Organization Kure Medical Center and Chugoku Cancer Center, Hiroshima, Japan, 3 Natural Science Center for Basic Research and Development, Hiroshima University, Hiroshima, Japan, 4 Division of Clinical Genome Research, the Institute of Medical Science, University of Tokyo, Tokyo, Japan, 5 Department of Surgery, National Hospital Organization Iwakuni Clinical Center, Yamaguchi, Japan, 6 Departments of Gastroenterology and Metabolism, Applied Life Sciences, Institute of Biomedical & Health Sciences, Hiroshima University, Hiroshima, Japan, 7 Department of Health Science, Program in Human OPEN ACCESS Culture and Science, Prefectural University of Hiroshima, Hiroshima, Japan, 8 Department of Molecular Citation: Miguchi M, Hinoi T, Shimomura M, Pathology, Applied Life Sciences, Institute of Biomedical & Health Sciences, Hiroshima
    [Show full text]
  • Table S1. 103 Ferroptosis-Related Genes Retrieved from the Genecards
    Table S1. 103 ferroptosis-related genes retrieved from the GeneCards. Gene Symbol Description Category GPX4 Glutathione Peroxidase 4 Protein Coding AIFM2 Apoptosis Inducing Factor Mitochondria Associated 2 Protein Coding TP53 Tumor Protein P53 Protein Coding ACSL4 Acyl-CoA Synthetase Long Chain Family Member 4 Protein Coding SLC7A11 Solute Carrier Family 7 Member 11 Protein Coding VDAC2 Voltage Dependent Anion Channel 2 Protein Coding VDAC3 Voltage Dependent Anion Channel 3 Protein Coding ATG5 Autophagy Related 5 Protein Coding ATG7 Autophagy Related 7 Protein Coding NCOA4 Nuclear Receptor Coactivator 4 Protein Coding HMOX1 Heme Oxygenase 1 Protein Coding SLC3A2 Solute Carrier Family 3 Member 2 Protein Coding ALOX15 Arachidonate 15-Lipoxygenase Protein Coding BECN1 Beclin 1 Protein Coding PRKAA1 Protein Kinase AMP-Activated Catalytic Subunit Alpha 1 Protein Coding SAT1 Spermidine/Spermine N1-Acetyltransferase 1 Protein Coding NF2 Neurofibromin 2 Protein Coding YAP1 Yes1 Associated Transcriptional Regulator Protein Coding FTH1 Ferritin Heavy Chain 1 Protein Coding TF Transferrin Protein Coding TFRC Transferrin Receptor Protein Coding FTL Ferritin Light Chain Protein Coding CYBB Cytochrome B-245 Beta Chain Protein Coding GSS Glutathione Synthetase Protein Coding CP Ceruloplasmin Protein Coding PRNP Prion Protein Protein Coding SLC11A2 Solute Carrier Family 11 Member 2 Protein Coding SLC40A1 Solute Carrier Family 40 Member 1 Protein Coding STEAP3 STEAP3 Metalloreductase Protein Coding ACSL1 Acyl-CoA Synthetase Long Chain Family Member 1 Protein
    [Show full text]
  • Gene Polymorphism Linked to Increased Asthma and IBD Risk Alters Gasdermin-B Structure, a Sulfatide and Phosphoinositide Binding Protein
    Gene polymorphism linked to increased asthma and IBD risk alters gasdermin-B structure, a sulfatide and phosphoinositide binding protein Kinlin L. Chaoa, Liudmila Kulakovaa, and Osnat Herzberga,b,1 aInstitute for Bioscience and Biotechnology Research, University of Maryland, Rockville, MD 20850; and bDepartment of Chemistry and Biochemistry, University of Maryland, College Park, MD 20742 Edited by Ada Yonath, Weizmann Institute of Science, Rehovot, Israel, and approved December 23, 2016 (received for review October 9, 2016) The exact function of human gasdermin-B (GSDMB), which regulates The recent crystal structure of mouse Gsdma3 [an ortholog of differentiation and growth of epithelial cells, is yet to be elucidated. GSDMA; Protein Data Bank (PDB) ID code 5B5R] revealed a In human epidermal growth factor receptor 2 (HER2)-positive breast two-domain protein connected by a long flexible linker. The cancer, GSDMB gene amplification and protein overexpression indi- N-terminal domain folds into an α+β structure, and the C-terminal cate a poor response to HER2-targeted therapy. Genome-wide asso- domain comprises predominantly α-helices (25). Multiple amino ciation studies revealed a correlation between GSDMB SNPs and acid sequence alignment of GSDM family members, ∼400 to an increased susceptibility to Crohn’s disease, ulcerative colitis, and 500 aa in length, reveals 9% sequence identity among the four asthma. The N- and C-terminal domains of all gasdermins possess human GSDM paralogues (Fig. 1). However, pairwise alignments lipid-binding and regulatory activities, respectively. Inflammatory show 29%, 24%, and 25% amino acid sequence identity between caspases cleave gasdermin-D in the interdomain linker but not GSDMB and its paralogues, GSDMA, GSDMC, and GSDMD, GSDMB.
    [Show full text]
  • Unveiling the Secrets of Gasdermins Driving Cell Death
    Cell Death and Differentiation (2017) 24, 588–596 Official journal of the Cell Death Differentiation Association OPEN www.nature.com/cdd Review ‘Hints’ in the killer protein gasdermin D: unveiling the secrets of gasdermins driving cell death Shiqiao Qiu1,2, Jing Liu*,3 and Feiyue Xing*,1,2 Pyroptosis is a lytic form of cell death distinguished from apoptosis, ferroptosis, necrosis, necroptosis, NETosis, oncosis, pyronecrosis and autophagy. Proinflammatory caspases cleave a gasdermin D (GSDMD) protein to generate a 31 kDa N-terminal domain. The cleavage relieves the intramolecular inhibition on the gasdermin-N domain, which then moves to the plasma membrane to exhibit pore-forming activity. Thus, GSDMD acts as the final and direct executor of pyroptotic cell death. Owing to the selective targeting of the inner leaflet of the plasma membrane with the pore-forming that determines pyroptotic cell death, GSDMD could be a potential target to control cell death or extracellular bacterial infections. Intriguingly, other gasdermin family members also share similar N-terminal domains, but they present different cell death programs. Herein, we summarize features and functions of the novel player proteins in cell death, including GSDMD triggering pyroptosis, Gsdma3/GSDMA initiating autophagy/ apoptosis and DFNA5 inducing apoptosis/secondary necrosis. The gasdermin N terminus appears to be a novel pore-forming protein. This provides novel insight into the underlying roles and mechanisms of lytic or nonlytic forms of programmed cell death, as well as
    [Show full text]