Unveiling the Secrets of Gasdermins Driving Cell Death
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Anti-DFNA5 Antibody (Internal) Rabbit Anti Human Polyclonal Antibody Catalog # ALS17405
10320 Camino Santa Fe, Suite G San Diego, CA 92121 Tel: 858.875.1900 Fax: 858.622.0609 Anti-DFNA5 Antibody (Internal) Rabbit Anti Human Polyclonal Antibody Catalog # ALS17405 Specification Anti-DFNA5 Antibody (Internal) - Product Information Application WB, IHC-P Primary Accession O60443 Predicted Human, Mouse, Rat Host Rabbit Clonality Polyclonal Calculated MW 54555 Anti-DFNA5 Antibody (Internal) - Additional Information Gene ID 1687 Alias Symbol DFNA5 Other Names DFNA5, ICERE-1, Deafness, autosomal dominant 5, ICERE1 Target/Specificity Recognizes endogenous levels of DFNA5 protein. Reconstitution & Storage PBS, pH 7.3, 0.01% sodium azide, 30% glycerol. Store at -20°C. Aliquot to avoid freeze/thaw cycles. Precautions Anti-DFNA5 Antibody (Internal) is for research use only and not for use in diagnostic or therapeutic procedures. Anti-DFNA5 Antibody (Internal) - Protein Information Name GSDME {ECO:0000303|PubMed:28459430, ECO:0000312|HGNC:HGNC:2810} Function [Gasdermin-E]: Precursor of a pore-forming protein that converts non-inflammatory apoptosis to pyroptosis (PubMed:<a href=" Page 1/2 10320 Camino Santa Fe, Suite G San Diego, CA 92121 Tel: 858.875.1900 Fax: 858.622.0609 http://www.uniprot.org/citations/27281216" target="_blank">27281216</a>, PubMed:<a href="http://www.uniprot.org/ci tations/28459430" target="_blank">28459430</a>). This form constitutes the precursor of the pore- forming protein: upon cleavage, the released N-terminal moiety (Gasdermin-E, N-terminal) binds to membranes and forms pores, triggering pyroptosis (PubMed:<a hr ef="http://www.uniprot.org/citations/28459 430" target="_blank">28459430</a>). Cellular Location [Gasdermin-E, N-terminal]: Cell membrane; Multi-pass membrane protein {ECO:0000250|UniProtKB:Q5Y4Y6} Tissue Location Expressed in cochlea (PubMed:9771715). -
Integrating Single-Step GWAS and Bipartite Networks Reconstruction Provides Novel Insights Into Yearling Weight and Carcass Traits in Hanwoo Beef Cattle
animals Article Integrating Single-Step GWAS and Bipartite Networks Reconstruction Provides Novel Insights into Yearling Weight and Carcass Traits in Hanwoo Beef Cattle Masoumeh Naserkheil 1 , Abolfazl Bahrami 1 , Deukhwan Lee 2,* and Hossein Mehrban 3 1 Department of Animal Science, University College of Agriculture and Natural Resources, University of Tehran, Karaj 77871-31587, Iran; [email protected] (M.N.); [email protected] (A.B.) 2 Department of Animal Life and Environment Sciences, Hankyong National University, Jungang-ro 327, Anseong-si, Gyeonggi-do 17579, Korea 3 Department of Animal Science, Shahrekord University, Shahrekord 88186-34141, Iran; [email protected] * Correspondence: [email protected]; Tel.: +82-31-670-5091 Received: 25 August 2020; Accepted: 6 October 2020; Published: 9 October 2020 Simple Summary: Hanwoo is an indigenous cattle breed in Korea and popular for meat production owing to its rapid growth and high-quality meat. Its yearling weight and carcass traits (backfat thickness, carcass weight, eye muscle area, and marbling score) are economically important for the selection of young and proven bulls. In recent decades, the advent of high throughput genotyping technologies has made it possible to perform genome-wide association studies (GWAS) for the detection of genomic regions associated with traits of economic interest in different species. In this study, we conducted a weighted single-step genome-wide association study which combines all genotypes, phenotypes and pedigree data in one step (ssGBLUP). It allows for the use of all SNPs simultaneously along with all phenotypes from genotyped and ungenotyped animals. Our results revealed 33 relevant genomic regions related to the traits of interest. -
RNA Editing at Baseline and Following Endoplasmic Reticulum Stress
RNA Editing at Baseline and Following Endoplasmic Reticulum Stress By Allison Leigh Richards A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy (Human Genetics) in The University of Michigan 2015 Doctoral Committee: Professor Vivian G. Cheung, Chair Assistant Professor Santhi K. Ganesh Professor David Ginsburg Professor Daniel J. Klionsky Dedication To my father, mother, and Matt without whom I would never have made it ii Acknowledgements Thank you first and foremost to my dissertation mentor, Dr. Vivian Cheung. I have learned so much from you over the past several years including presentation skills such as never sighing and never saying “as you can see…” You have taught me how to think outside the box and how to create and explain my story to others. I would not be where I am today without your help and guidance. Thank you to the members of my dissertation committee (Drs. Santhi Ganesh, David Ginsburg and Daniel Klionsky) for all of your advice and support. I would also like to thank the entire Human Genetics Program, and especially JoAnn Sekiguchi and Karen Grahl, for welcoming me to the University of Michigan and making my transition so much easier. Thank you to Michael Boehnke and the Genome Science Training Program for supporting my work. A very special thank you to all of the members of the Cheung lab, past and present. Thank you to Xiaorong Wang for all of your help from the bench to advice on my career. Thank you to Zhengwei Zhu who has helped me immensely throughout my thesis even through my panic. -
Role of Gasdermins in the Biogenesis of Apoptotic Cell–Derived Exosomes
bioRxiv preprint doi: https://doi.org/10.1101/2021.04.27.441709; this version posted April 27, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. 1 Role of Gasdermins in the Biogenesis of Apoptotic Cell–Derived Exosomes 2 Running title: Gasdermins-mediated increase of apoptotic exosomes 3 4 Jaehark Hur1,2,*, Yeon Ji Kim1,2,*, Da Ae Choi1,2,*, Dae Wook Kang1,2,*, Jaeyoung Kim3,4,*, Hyo Soon Yoo1,2, Sk 5 Abrar Shahriyar1,2, Tamanna Mustajab1,2, Dong Young Kim3,5, Yong-Joon Chwae1,2 6 7 1Department of Microbiology, Ajou University School of Medicine, Suwon, 8 Gyeonggi-do 16499, South Korea; 2Department of Biomedical Science, Graduate School of Ajou University, 9 Suwon, Gyeonggi-do 16499, South Korea; 3Department of Medicine, Graduate School of Ajou University, 10 Suwon, Gyeonggi-do 16499, South Korea; 4CK-Exogene Inc., Seoul 54853, South Korea; 5Department of 11 Otolaryngology, Ajou University School of Medicine, Suwon, Gyeonggi-do 16499, South Korea 12 13 *These authors contributed equally to this work. 14 15 Address correspondence to: Yong-Joon Chwae, Department of Microbiology, Ajou University School of 16 Medicine, 164 World Cup Road, Yeongtong-gu, Suwon, Gyeonggi-do 443-380, South Korea. Tel: +82 31 219 17 5073; Fax: +82 31 219 5079; E-mail: [email protected] 18 1 bioRxiv preprint doi: https://doi.org/10.1101/2021.04.27.441709; this version posted April 27, 2021. -
1 INVITED REVIEW Mechanisms of Gasdermin Family Members in Inflammasome Signaling and Cell Death Shouya Feng,* Daniel Fox,* Si M
INVITED REVIEW Mechanisms of Gasdermin family members in inflammasome signaling and cell death Shouya Feng,* Daniel Fox,* Si Ming Man Department of Immunology and Infectious Disease, The John Curtin School of Medical Research, The Australian National University, Canberra, Australia. * S.F. and D.F. equally contributed to this work Correspondence to Si Ming Man: Department of Immunology and Infectious Disease, The John Curtin School of Medical Research, The Australian National University, Canberra, 2601, Australia. [email protected] 1 Abstract The Gasdermin (GSDM) family consists of Gasdermin A (GSDMA), Gasdermin B (GSDMB), Gasdermin C (GSDMC), Gasdermin D (GSDMD), Gasdermin E (GSDME) and Pejvakin (PJVK). GSDMD is activated by inflammasome-associated inflammatory caspases. Cleavage of GSDMD by human or mouse caspase-1, human caspase-4, human caspase-5, and mouse caspase-11, liberates the N-terminal effector domain from the C-terminal inhibitory domain. The N-terminal domain oligomerizes in the cell membrane and forms a pore of 10-16 nm in diameter, through which substrates of a smaller diameter, such as interleukin (IL)-1β and IL- 18, are secreted. The increasing abundance of membrane pores ultimately leads to membrane rupture and pyroptosis, releasing the entire cellular content. Other than GSDMD, the N-terminal domain of all GSDMs, with the exception of PJVK, have the ability to form pores. There is evidence to suggest that GSDMB and GSDME are cleaved by apoptotic caspases. Here, we review the mechanistic functions of GSDM proteins with respect to their expression and signaling profile in the cell, with more focused discussions on inflammasome activation and cell death. -
DFNA5 Antibody (N-Term) Purified Rabbit Polyclonal Antibody (Pab) Catalog # AP6842A
10320 Camino Santa Fe, Suite G San Diego, CA 92121 Tel: 858.875.1900 Fax: 858.622.0609 DFNA5 Antibody (N-term) Purified Rabbit Polyclonal Antibody (Pab) Catalog # AP6842A Specification DFNA5 Antibody (N-term) - Product Information Application WB,E Primary Accession O60443 Reactivity Human Host Rabbit Clonality Polyclonal Isotype Rabbit Ig Antigen Region 59-87 DFNA5 Antibody (N-term) - Additional Information Gene ID 1687 Other Names Non-syndromic hearing impairment protein 5, Inversely correlated with estrogen All lanes : Anti-DFNA5 Antibody (N-term) at receptor expression 1, ICERE-1, DFNA5, 1:1000 dilution Lane 1: Hela whole cell lysate ICERE1 Lane 2: U-251 MG whole cell lysate Lane 3: U-87 MG whole cell lysate Lane 4: U-2OS Target/Specificity whole cell lysate Lane 5: MCF-7 whole cell This DFNA5 antibody is generated from lysate Lysates/proteins at 20 µg per lane. rabbits immunized with a KLH conjugated synthetic peptide between 59-87 amino Secondary Goat Anti-Rabbit IgG, (H+L), acids from the N-terminal region of human Peroxidase conjugated at 1/10000 dilution. DFNA5. Predicted band size : 55 kDa Blocking/Dilution buffer: 5% NFDM/TBST. Dilution WB~~1:1000 DFNA5 Antibody (N-term) - Background Format Purified polyclonal antibody supplied in PBS Hearing impairment is a heterogeneous with 0.09% (W/V) sodium azide. This condition with over 40 loci described. DFNA5 is antibody is prepared by Saturated expressed in fetal cochlea, however, its Ammonium Sulfate (SAS) precipitation function is not known. followed by dialysis against PBS. DFNA5 Antibody (N-term) - References Storage Maintain refrigerated at 2-8°C for up to 2 Cheng,J., et.al., Clin. -
The Metabolite α-KG Induces GSDMC-Dependent Pyroptosis Through Death Receptor 6-Activated Caspase-8
www.nature.com/cr www.cell-research.com ARTICLE OPEN The metabolite α-KG induces GSDMC-dependent pyroptosis through death receptor 6-activated caspase-8 Jia-yuan Zhang1, Bo Zhou1, Ru-yue Sun1, Yuan-li Ai1, Kang Cheng1, Fu-nan Li2, Bao-rui Wang2, Fan-jian Liu1, Zhi-hong Jiang1, Wei-jia Wang1, Dawang Zhou 1, Hang-zi Chen 1 and Qiao Wu 1 Pyroptosis is a form of regulated cell death mediated by gasdermin family members, among which the function of GSDMC has not been clearly described. Herein, we demonstrate that the metabolite α-ketoglutarate (α-KG) induces pyroptosis through caspase-8- mediated cleavage of GSDMC. Treatment with DM-αKG, a cell-permeable derivative of α-KG, elevates ROS levels, which leads to oxidation of the plasma membrane-localized death receptor DR6. Oxidation of DR6 triggers its endocytosis, and then recruits both pro-caspase-8 and GSDMC to a DR6 receptosome through protein-protein interactions. The DR6 receptosome herein provides a platform for the cleavage of GSDMC by active caspase-8, thereby leading to pyroptosis. Moreover, this α-KG-induced pyroptosis could inhibit tumor growth and metastasis in mouse models. Interestingly, the efficiency of α-KG in inducing pyroptosis relies on an acidic environment in which α-KG is reduced by MDH1 and converted to L-2HG that further boosts ROS levels. Treatment with lactic acid, the end product of glycolysis, builds an improved acidic environment to facilitate more production of L-2HG, which makes the originally pyroptosis-resistant cancer cells more susceptible to α-KG-induced pyroptosis. This study not only illustrates a pyroptotic pathway linked with metabolites but also identifies an unreported principal axis extending from ROS-initiated DR6 endocytosis to caspase-8-mediated cleavage of GSDMC for potential clinical application in tumor therapy. -
1 1 2 3 Genome-Wide Association Study of Body Fat Distribution
bioRxiv preprint doi: https://doi.org/10.1101/207498; this version posted July 13, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 2 3 4 Genome-Wide Association Study of Body Fat Distribution identifies Novel 5 Adiposity Loci and Sex-Specific Genetic Effects 6 7 Mathias Rask-Andersen*1, Torgny Karlsson1, Weronica E Ek1, Åsa Johansson*1 8 9 10 1Department of Immunology, Genetics and Pathology, Science for Life Laboratory, 11 Uppsala University. Box 256, 751 05, Uppsala, Sweden. 12 *Corresponding authors: [email protected] and 13 [email protected] 14 15 16 17 18 1 bioRxiv preprint doi: https://doi.org/10.1101/207498; this version posted July 13, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 19 Body mass and body fat composition are of clinical interest due to their links to 20 cardiovascular- and metabolic diseases. Fat stored in the trunk has been 21 suggested as more pathogenic compared to fat stored in other compartments of 22 the body. In this study, we performed genome-wide association studies (GWAS) 23 for the proportion of body fat distributed to the arms, legs and trunk estimated 24 from segmental bio-electrical impedance analysis (sBIA) for 362,499 individuals 25 from the UK Biobank. A total of 97 loci, were identified to be associated with 26 body fat distribution, 40 of which have not previously been associated with an 27 anthropometric trait. -
Mechanisms and Therapeutic Regulation of Pyroptosis in Inflammatory Diseases and Cancer
International Journal of Molecular Sciences Review Mechanisms and Therapeutic Regulation of Pyroptosis in Inflammatory Diseases and Cancer Zhaodi Zheng and Guorong Li * Shandong Provincial Key Laboratory of Animal Resistant, School of Life Sciences, Shandong Normal University, Jinan 250014, China; [email protected] * Correspondence: [email protected]; Tel.: +86-531-8618-2690 Received: 24 January 2020; Accepted: 17 February 2020; Published: 20 February 2020 Abstract: Programmed Cell Death (PCD) is considered to be a pathological form of cell death when mediated by an intracellular program and it balances cell death with survival of normal cells. Pyroptosis, a type of PCD, is induced by the inflammatory caspase cleavage of gasdermin D (GSDMD) and apoptotic caspase cleavage of gasdermin E (GSDME). This review aims to summarize the latest molecular mechanisms about pyroptosis mediated by pore-forming GSDMD and GSDME proteins that permeabilize plasma and mitochondrial membrane activating pyroptosis and apoptosis. We also discuss the potentiality of pyroptosis as a therapeutic target in human diseases. Blockade of pyroptosis by compounds can treat inflammatory disease and pyroptosis activation contributes to cancer therapy. Keywords: pyroptosis; GSDMD; GSDME; inflammatory disease; cancer therapy 1. Introduction Many disease states are cross-linked with cell death. The Nomenclature Committee on Cell Death make a series of recommendations to systematically classify cell death [1,2]. Programmed Cell Death (PCD) is mediated by specific cellular mechanisms and some signaling pathways are activated in these processes [3]. Apoptosis, autophagy and programmed necrosis are the three main types of PCD [4], and they may jointly determine the fate of malignant tumor cells. -
The Deafness Gene Dfna5 Is Crucial for Ugdh Expression and HA
Research article Development and disease 943 The deafness gene dfna5 is crucial for ugdh expression and HA production in the developing ear in zebrafish Elisabeth Busch-Nentwich1, Christian Söllner1, Henry Roehl2 and Teresa Nicolson3,* 1Max-Planck-Institut für Entwicklungsbiologie, Spemannstr. 35, 72076 Tübingen, Germany 2Centre for Developmental Genetics, Department of Biomedical Science, University of Sheffield, Firth Court, Sheffield S10 2TN, UK 3Oregon Hearing Research Center and Vollum Institute, Oregon Health & Science University, Portland, OR 97201, USA *Author for correspondence (e-mail: [email protected]) Accepted 30 October 2003 Development 131, 943-951 Published by The Company of Biologists 2004 doi:10.1242/dev.00961 Summary Over 30 genes responsible for human hereditary hearing including the mutant jekyll. jekyll encodes Ugdh [uridine 5′- loss have been identified during the last 10 years. The diphosphate (UDP)-glucose dehydrogenase], an enzyme proteins encoded by these genes play roles in a diverse that is crucial for production of the extracellular matrix set of cellular functions ranging from transcriptional component hyaluronic acid (HA). In dfna5 morphants, regulation to K+ recycling. In a few cases, the genes are expression of ugdh is absent in the developing ear and novel and do not give much insight into the cellular or pharyngeal arches, and HA levels are strongly reduced in molecular cause for the hearing loss. Among these poorly the outgrowing protrusions of the developing semicircular understood deafness genes is DFNA5. How the truncation canals. Previous studies suggest that HA is essential for of the encoded protein DFNA5 leads to an autosomal differentiating cartilage and directed outgrowth of the dominant form of hearing loss is not clear. -
Anti-GSDME / DFNA5 Antibody (ARG42602)
Product datasheet [email protected] ARG42602 Package: 100 μl anti-GSDME / DFNA5 antibody Store at: -20°C Summary Product Description Rabbit Polyclonal antibody recognizes GSDME / DFNA5 Tested Reactivity Hu, Ms, Rat Tested Application FACS, IP, WB Host Rabbit Clonality Polyclonal Isotype IgG Target Name GSDME / DFNA5 Antigen Species Human Immunogen Recombinant protein corresponding to aa. 1-270 of Human GSDME / DFNA5. Conjugation Un-conjugated Alternate Names Inversely correlated with estrogen receptor expression 1; Non-syndromic hearing impairment protein 5; ICERE-1 Application Instructions Application table Application Dilution FACS 1:20 IP 1:20 WB 1:1000 Application Note * The dilutions indicate recommended starting dilutions and the optimal dilutions or concentrations should be determined by the scientist. Calculated Mw 55 kDa Properties Form Liquid Purification Affinity purified. Buffer 50 nM Tris-Glycine (pH 7.4), 0.15M NaCl, 0.01% Sodium azide, 40% Glycerol and 0.05% BSA. Preservative 0.01% Sodium azide Stabilizer 40% Glycerol and 0.05% BSA Storage instruction For continuous use, store undiluted antibody at 2-8°C for up to a week. For long-term storage, aliquot and store at -20°C. Storage in frost free freezers is not recommended. Avoid repeated freeze/thaw cycles. Suggest spin the vial prior to opening. The antibody solution should be gently mixed before use. Note For laboratory research only, not for drug, diagnostic or other use. www.arigobio.com 1/2 Bioinformation Gene Symbol DFNA5 Gene Full Name deafness, autosomal dominant 5 Background Hearing impairment is a heterogeneous condition with over 40 loci described. The protein encoded by this gene is expressed in fetal cochlea, however, its function is not known. -
The Potential Role of DFNA5, a Hearing Impairment Gene, in P53-Mediated Cellular Response to DNA Damage
(2006) 51:652–664 DOI 10.1007/s10038-006-0004-6 ORIGINAL ARTICLE The potential role of DFNA5, a hearing impairment gene, in p53-mediated cellular response to DNA damage Yoshiko Masuda Æ Manabu Futamura Æ Hiroki Kamino Æ Yasuyuki Nakamura Æ Noriaki Kitamura Æ Shiho Ohnishi Æ Yuji Miyamoto Æ Hitoshi Ichikawa Æ Tsutomu Ohta Æ Misao Ohki Æ Tohru Kiyono Æ Hiroshi Egami Æ Hideo Baba Æ Hirofumi Arakawa Received: 17 March 2006 / Accepted: 21 April 2006 / Published online: 2 August 2006 Ó The Japan Society of Human Genetics and Springer-Verlag 2006 Abstract The tumor suppressor p53 plays a crucial gene was strongly induced by exogenous and endoge- role in the cellular response to DNA damage by tran- nous p53. The chromatin immunoprecipitation assay scriptional activation of numerous downstream genes. indicated that a potential p53-binding sequence is lo- Although a considerable number of p53 target genes cated in intron 1 of the DFNA5 gene. Furthermore, the have been reported, the precise mechanism of p53- reporter gene assay revealed that the sequence displays regulated tumor suppression still remains to be eluci- p53-dependent transcriptional activity. The ectopic dated. Here, we report a novel role of the DFNA5 gene expression of DFNA5 enhanced etoposide-induced cell in p53-mediated etoposide-induced cell death. The death in the presence of p53; however, it was inhibited DFNA5 gene has been previously reported to be in the absence of p53. Finally, the expression of responsible for autosomal-dominant, nonsyndromic DFNA5 mRNA was remarkably induced by gamma- hearing impairment. The expression of the DFNA5 ray irradiation in the colon of p53(+/+) mice but not in that of p53(–/–) mice.