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Discussions on Fungal Taxonomy and Nomenclature of Allergic Fungal Rhinosinusitis
Romanian Journal of Rhinology, Vol. 3, No. 11, July - September 2013 LITERATURE REVIEW Discussions on fungal taxonomy and nomenclature of allergic fungal rhinosinusitis Florin-Dan Popescu Department of Allergology, “Nicolae Malaxa” Clinical Hospital, “Carol Davila” University of Medicine and Pharmacy, Bucharest, Romania ABSTRACT There is a significant debate regarding the role of fungi in chronic rhinosinusitis and whether allergic fungal rhinosi- nusitis truly represents an allergic subtype. The diverse nomenclature and heterogeneous taxonomy of fungi involved in the etiopathogenesis of this entity is important to be discussed in order to clarify the organisms detected and in- volved in this complex disease. KEYWORDS: fungi, allergic fungal rhinosinusitis INTRODUCTION flammatory cascade in AFRS is a multifunctional event, requiring the simultaneous occurrence of IgE- Fungal diseases of the nose and sinuses include a mediated sensitivity, specific T-cell HLA receptor ex- diverse spectrum of disease1. Although confusion pression and exposure to specific fungi4. Early recog- exists regarding fungal rhinosinusitis (FRS) classifi- nition of AFRS may be facilitated by screening pa- cation, a commonly accepted system divides FRS into tients with polypoid chronic rhinosinusitis or CRS invasive and noninvasive diseases based on histo- with nasal polyps (CRSwNP) patients for serum spe- pathological evidence of tissue invasion by fungi. cific IgE to molds5. Such specific IgE antibodies are The noninvasive diseases include saprophytic fungal also detectable in nasal lavage fluid and eosinophilic infestation, fungal ball and fungus-related eosinophi- mucin. Sinus mucosa homogenates may be assessed lic FRS (EFRS) that includes allergic fungal rhinosi- for IgE localization by immunohistochemistry and nusitis (AFRS). for antigen-specific IgE to fungal antigens by fluores- cent enzyme immunoassay6. -
A Worldwide List of Endophytic Fungi with Notes on Ecology and Diversity
Mycosphere 10(1): 798–1079 (2019) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/10/1/19 A worldwide list of endophytic fungi with notes on ecology and diversity Rashmi M, Kushveer JS and Sarma VV* Fungal Biotechnology Lab, Department of Biotechnology, School of Life Sciences, Pondicherry University, Kalapet, Pondicherry 605014, Puducherry, India Rashmi M, Kushveer JS, Sarma VV 2019 – A worldwide list of endophytic fungi with notes on ecology and diversity. Mycosphere 10(1), 798–1079, Doi 10.5943/mycosphere/10/1/19 Abstract Endophytic fungi are symptomless internal inhabits of plant tissues. They are implicated in the production of antibiotic and other compounds of therapeutic importance. Ecologically they provide several benefits to plants, including protection from plant pathogens. There have been numerous studies on the biodiversity and ecology of endophytic fungi. Some taxa dominate and occur frequently when compared to others due to adaptations or capabilities to produce different primary and secondary metabolites. It is therefore of interest to examine different fungal species and major taxonomic groups to which these fungi belong for bioactive compound production. In the present paper a list of endophytes based on the available literature is reported. More than 800 genera have been reported worldwide. Dominant genera are Alternaria, Aspergillus, Colletotrichum, Fusarium, Penicillium, and Phoma. Most endophyte studies have been on angiosperms followed by gymnosperms. Among the different substrates, leaf endophytes have been studied and analyzed in more detail when compared to other parts. Most investigations are from Asian countries such as China, India, European countries such as Germany, Spain and the UK in addition to major contributions from Brazil and the USA. -
Characterising Plant Pathogen Communities and Their Environmental Drivers at a National Scale
Lincoln University Digital Thesis Copyright Statement The digital copy of this thesis is protected by the Copyright Act 1994 (New Zealand). This thesis may be consulted by you, provided you comply with the provisions of the Act and the following conditions of use: you will use the copy only for the purposes of research or private study you will recognise the author's right to be identified as the author of the thesis and due acknowledgement will be made to the author where appropriate you will obtain the author's permission before publishing any material from the thesis. Characterising plant pathogen communities and their environmental drivers at a national scale A thesis submitted in partial fulfilment of the requirements for the Degree of Doctor of Philosophy at Lincoln University by Andreas Makiola Lincoln University, New Zealand 2019 General abstract Plant pathogens play a critical role for global food security, conservation of natural ecosystems and future resilience and sustainability of ecosystem services in general. Thus, it is crucial to understand the large-scale processes that shape plant pathogen communities. The recent drop in DNA sequencing costs offers, for the first time, the opportunity to study multiple plant pathogens simultaneously in their naturally occurring environment effectively at large scale. In this thesis, my aims were (1) to employ next-generation sequencing (NGS) based metabarcoding for the detection and identification of plant pathogens at the ecosystem scale in New Zealand, (2) to characterise plant pathogen communities, and (3) to determine the environmental drivers of these communities. First, I investigated the suitability of NGS for the detection, identification and quantification of plant pathogens using rust fungi as a model system. -
Leaf Blotch of Cereals CP
INDUSTRY BIOSECURITY PLAN FOR THE GRAINS INDUSTRY Threat Specific Contingency Plan Leaf blotch of cereals Bipolaris spicifera (formally known as Drechslera tetramera) Prepared by Dr Joe Kochman and Plant Health Australia May 2009 PLANT HEALTH AUSTRALIA | Contingency Plan – Leaf blotch of cereals (Bipolaris spicifera) Disclaimer The scientific and technical content of this document is current to the date published and all efforts were made to obtain relevant and published information on the pest. New information will be included as it becomes available, or when the document is reviewed. The material contained in this publication is produced for general information only. It is not intended as professional advice on any particular matter. No person should act or fail to act on the basis of any material contained in this publication without first obtaining specific, independent professional advice. Plant Health Australia and all persons acting for Plant Health Australia in preparing this publication, expressly disclaim all and any liability to any persons in respect of anything done by any such person in reliance, whether in whole or in part, on this publication. The views expressed in this publication are not necessarily those of Plant Health Australia. Further information For further information regarding this contingency plan, contact Plant Health Australia through the details below. Address: Suite 5, FECCA House 4 Phipps Close DEAKIN ACT 2600 Phone: +61 2 6215 7700 Fax: +61 2 6260 4321 Email: [email protected] Website: www.planthealthaustralia.com.au | PAGE 2 PLANT HEALTH AUSTRALIA | Contingency Plan – Leaf blotch of cereals (Bipolaris spicifera) 1 Purpose of this Contingency Plan ......................................................................................... -
Identification of Pathogens and Control of Spot Blotch Disease of Barley (Hordeum Vulgare) by Combining Plant Resistance and Biological Control
Identification of pathogens and control of spot blotch disease of barley (Hordeum vulgare) by combining plant resistance and biological control Abdallah Mohamed M Ali Aada A Thesis Submitted for the Degree of Doctor of Philosophy April 2013 School of Biology Faculty of Science, Agriculture and Engineering Newcastle University Newcastle upon Tyne UK Summary Identification of pathogens and control of spot blotch disease of barley (Hordeum vulgare) by combining plant resistance and biological control agents with different methods of application Spot blotch is one of the most important diseases of barley (Hordeum vulgare) in Libya and worldwide. The overall aim of this study was to investigate the potential of biological control in combination with disease resistance to control spot blotch without the potential hazards of chemical application. Fungi were isolated from barley plants with spot blotch symptoms from different areas in Libya. As well as the commonly known spot blotch pathogen Bipolaris sorokiniana (teleomorph Cochliobolus sativus), Bipolaris spicifera (teleomorph Cochliobolus spicifer), Curvularia inaequalis, and Alternaria alternata were identified by their morphology and ribosomal DNA sequences. Bipolaris sorokiniana was the most serious pathogen under the test conditions; the others infected barley but caused less severe symptoms. Spot blotch resistance of barley seedlings was tested under greenhouse conditions with four Libyan cultivars (ACSAD, Nibola, Rehan, and Wadi Utbah) and two UK cultivars (Gaelic and Pastoral). Nibola was the most resistant. The ability of the organisms in three commercial biocontrol products, Trichoderma harzianum T-22 (Trianum), Streptomyces lydicus WYEC 108 (Actinovate) and Bacillus subtilis QST 713 (Serenade), to control spot blotch individually and in combination was investigated. -
Molecular Data Indicate That Rhytidhysteron Rufulum
mycological research 113 (2009) 405–416 journal homepage: www.elsevier.com/locate/mycres Molecular data indicate that Rhytidhysteron rufulum (ascomycetes, Patellariales) in Costa Rica consists of four distinct lineages corroborated by morphological and chemical characters Catalina MURILLOa,b,*, Federico J. ALBERTAZZIb,c, Julieta CARRANZAb, H. Thorsten LUMBSCHd, Giselle TAMAYOa,e aUnidad Estrate´gica de Bioprospeccio´n, Instituto Nacional de Biodiversidad (INBio), 22-3100, Santo Domingo de Heredia, Costa Rica bEscuela de Biologı´a, Universidad de Costa Rica, 11501-2060, San Jose´, Costa Rica cCentro de Biologı´a Celular y Molecular, Universidad de Costa Rica, 11501-2060, San Jose´, Costa Rica dDepartment of Botany, The Field Museum, 1400 S. Lake Shore Drive, Chicago, IL 60605, USA eEscuela de Quı´mica, Universidad de Costa Rica, 11501-2060 San Jose´, Costa Rica article info abstract Article history: Rhytidhysteron rufulum is a poorly known, common, pantropical species, capable of utilizing Received 15 January 2008 different substrata and occupying diverse habitats, and is the only species of its genus in Received in revised form Costa Rica. We have employed molecular, morphological, and chemical data to assess 26 June 2008 the variability and differentiation of R. rufulum in Costa Rica, including sites from the Accepted 4 September 2008 Pacific and Atlantic coast. Phylogenetic analyses of nuclear ITS rDNA sequences revealed Published online 30 September 2008 the presence of four distinct lineages in the R. rufulum complex. Re-examination of the Corresponding Editor: Rajesh Jeewon morphology and anatomy showed differences between these lineages in ascomatal, ascal, and ascospore size that have previously been regarded as intraspecific variations. -
Phenotypic and Molecular Characterization of Clinical Isolates of Bipolaris, Curvularia, Exserohilum and Pithomyces
PHENOTYPIC AND MOLECULAR CHARACTERIZATION OF CLINICAL ISOLATES OF BIPOLARIS, CURVULARIA, EXSEROHILUM AND PITHOMYCES Keith Cassia Da Cunha Dipòsit Legal: T 1479-2014 ADVERTIMENT. L'accés als continguts d'aquesta tesi doctoral i la seva utilització ha de respectar els drets de la persona autora. Pot ser utilitzada per a consulta o estudi personal, així com en activitats o materials d'investigació i docència en els termes establerts a l'art. 32 del Text Refós de la Llei de Propietat Intel·lectual (RDL 1/1996). Per altres utilitzacions es requereix l'autorització prèvia i expressa de la persona autora. En qualsevol cas, en la utilització dels seus continguts caldrà indicar de forma clara el nom i cognoms de la persona autora i el títol de la tesi doctoral. No s'autoritza la seva reproducció o altres formes d'explotació efectuades amb finalitats de lucre ni la seva comunicació pública des d'un lloc aliè al servei TDX. Tampoc s'autoritza la presentació del seu contingut en una finestra o marc aliè a TDX (framing). Aquesta reserva de drets afecta tant als continguts de la tesi com als seus resums i índexs. ADVERTENCIA. El acceso a los contenidos de esta tesis doctoral y su utilización debe respetar los derechos de la persona autora. Puede ser utilizada para consulta o estudio personal, así como en actividades o materiales de investigación y docencia en los términos establecidos en el art. 32 del Texto Refundido de la Ley de Propiedad Intelectual (RDL 1/1996). Para otros usos se requiere la autorización previa y expresa de la persona autora. -
Redalyc.DIVERSITY of SAPROTROPHIC ANAMORPHIC
Darwiniana ISSN: 0011-6793 [email protected] Instituto de Botánica Darwinion Argentina Allegrucci, Natalia; Cabello, Marta N.; Arambarri, Angélica M. DIVERSITY OF SAPROTROPHIC ANAMORPHIC ASCOMYCETES FROM NATIVE FORESTS IN ARGENTINA: AN UPDATED REVIEW Darwiniana, vol. 47, núm. 1, 2009, pp. 108-124 Instituto de Botánica Darwinion Buenos Aires, Argentina Available in: http://www.redalyc.org/articulo.oa?id=66912085007 How to cite Complete issue Scientific Information System More information about this article Network of Scientific Journals from Latin America, the Caribbean, Spain and Portugal Journal's homepage in redalyc.org Non-profit academic project, developed under the open access initiative DARWINIANA 47(1): 108-124. 2009 ISSN 0011-6793 DIVERSITY OF SAPROTROPHIC ANAMORPHIC ASCOMYCETES FROM NATIVE FORESTS IN ARGENTINA: AN UPDATED REVIEW Natalia Allegrucci, Marta N. Cabello & Angélica M. Arambarri Instituto de Botánica Spegazzini, Facultad de Ciencias Naturales y Museo, Universidad Nacional de La Plata, 1900 La Plata, Provincia de Buenos Aires, Argentina; [email protected] (author for correspondence). Abstract. Allegrucci, N.; M. N. Cabello & A. M. Arambarri. 2009. Diversity of Saprotrophic Anamorphic Ascomy- cetes from native forests in Argentina: an updated review. Darwiniana 47(1): 108-124. Eight regions of native forests have been recognized in Argentina: Chaco forest, Misiones rain forest, Tucumán-Bolivia forest (Yunga), Andean-Patagonian forest, “Monte”, “Espinal”, fluvial forests of the Paraguay, Paraná and Uruguay rivers, and “Talares” in the Pampean region. We reviewed the available data concerning biodiversity of saprotrophic micro-fungi (anamorphic Ascomycota) in those native forests from Argentina, from the earliest collections, done by Spegazzini, to present. Among the above mentioned regions most studies on saprotrophic micro-fungi concentrates on the Andean-Pata- gonian forest, the fluvial forests of the Paraguay, Paraná and Uruguay rivers and the “Talares”, in the Pampean region. -
Cochliobolus - Curvularia Complex
Fungal Diversity (2012) 56:131–144 DOI 10.1007/s13225-012-0189-2 A phylogenetic and taxonomic re-evaluation of the Bipolaris - Cochliobolus - Curvularia Complex Dimuthu S. Manamgoda & Lei Cai & Eric H. C. McKenzie & Pedro W. Crous & Hugo Madrid & Ekachai Chukeatirote & Roger G. Shivas & Yu Pei Tan & Kevin D. Hyde Received: 16 June 2012 /Accepted: 11 July 2012 /Published online: 25 August 2012 # Mushroom Research Foundation 2012 Abstract Three genera, Cochliobolus, Bipolaris and Cur- complex based on a set of ex-type cultures and collections vularia form a complex that contains many plant pathogens, from northern Thailand. Combined gene analysis of rDNA mostly on grasses (Poaceae) with a worldwide distribution. ITS (internal transcribed spacer), GPDH (glyceraldehyde 3- The taxonomy of this complex is confusing as frequent phosphate dehydrogenase), LSU (large subunit) and EF1-α nomenclatural changes and refinements have occurred. (translation elongation factor 1-α) shows that this generic There is no clear morphological boundary between the complex divides into two groups. Bipolaris and Cochliobo- asexual genera Bipolaris and Curvularia, and some species lus species clustered in Group 1 along with their type show intermediate morphology. We investigated this species, whereas Curvularia species (including species named as Bipolaris, Cochliobolus and Curvularia) clustered in Group 2, with its generic type. The nomenclatural conflict in : : * D. S. Manamgoda E. Chukeatirote K. D. Hyde ( ) this complex is resolved giving priority to the more commonly Institute of Excellence in Fungal Research, Mae Fah Luang University, used established generic names Bipolaris and Curvularia. Chiang Rai 57100, Thailand Modern descriptions of the genera Bipolaris and Curvularia e-mail: [email protected] are provided and species resolved in this study are transferred D. -
Indian Sandalwood Pruning Management to Minimise Fungal Attack
Indian sandalwood pruning management to minimise fungal attack MAY 2014 RIRDC Publication No. 14/012 Indian sandalwood pruning management to minimise fungal attack by A/Prof Treena Burgess, Ms Diane White, Dr Liz Barbour, Mr Len Norris and Mr Jonathan Brand May 2014 RIRDC Publication No. 14/012 RIRDC Project No. PRJ-004786 © 2014 Rural Industries Research and Development Corporation. All rights reserved. ISBN 978-1-74254-628-5 ISSN 1440-6845 Indian sandalwood pruning management to minimise fungal attack Publication No. 14/012 Project No. PRJ-004786 The information contained in this publication is intended for general use to assist public knowledge and discussion and to help improve the development of sustainable regions. You must not rely on any information contained in this publication without taking specialist advice relevant to your particular circumstances. While reasonable care has been taken in preparing this publication to ensure that information is true and correct, the Commonwealth of Australia gives no assurance as to the accuracy of any information in this publication. The Commonwealth of Australia, the Rural Industries Research and Development Corporation (RIRDC), the authors or contributors expressly disclaim, to the maximum extent permitted by law, all responsibility and liability to any person, arising directly or indirectly from any act or omission, or for any consequences of any such act or omission, made in reliance on the contents of this publication, whether or not caused by any negligence on the part of the Commonwealth of Australia, RIRDC, the authors or contributors. The Commonwealth of Australia does not necessarily endorse the views in this publication. -
Diversity of Saprotrophic Anamorphic Ascomycetes from Native Forests in Argentina: an Updated Review
DARWINIANA 47(1): 108-124. 2009 ISSN 0011-6793 DIVERSITY OF SAPROTROPHIC ANAMORPHIC ASCOMYCETES FROM NATIVE FORESTS IN ARGENTINA: AN UPDATED REVIEW Natalia Allegrucci, Marta N. Cabello & Angélica M. Arambarri Instituto de Botánica Spegazzini, Facultad de Ciencias Naturales y Museo, Universidad Nacional de La Plata, 1900 La Plata, Provincia de Buenos Aires, Argentina; [email protected] (author for correspondence). Abstract. Allegrucci, N.; M. N. Cabello & A. M. Arambarri. 2009. Diversity of Saprotrophic Anamorphic Ascomy- cetes from native forests in Argentina: an updated review. Darwiniana 47(1): 108-124. Eight regions of native forests have been recognized in Argentina: Chaco forest, Misiones rain forest, Tucumán-Bolivia forest (Yunga), Andean-Patagonian forest, “Monte”, “Espinal”, fluvial forests of the Paraguay, Paraná and Uruguay rivers, and “Talares” in the Pampean region. We reviewed the available data concerning biodiversity of saprotrophic micro-fungi (anamorphic Ascomycota) in those native forests from Argentina, from the earliest collections, done by Spegazzini, to present. Among the above mentioned regions most studies on saprotrophic micro-fungi concentrates on the Andean-Pata- gonian forest, the fluvial forests of the Paraguay, Paraná and Uruguay rivers and the “Talares”, in the Pampean region. There are only a few records of fungal species in other native forests. No record of anamorphic species of Ascomycota was previously available for “Monte” forests. From a comprehen- sive bibliographic review, a total of 344 species were registered, of which 81 (23,5%) are new spe- cies.This work manifests the lack of explorations in important areas of the country, and demonstrates the need to increase those studies. Keywords. -
Report of Some Fungi of Pleosporaceae Family Associated with Leaf Spot Symptoms of Plants in Chaharmahal and Bakhtiari Province, Iran
J. Crop Prot. 2021, 10 (2): 319-340_____________________________________________________ Research Article Report of some fungi of Pleosporaceae family associated with leaf spot symptoms of plants in Chaharmahal and Bakhtiari province, Iran Samira Karimzadeh and Khalil-Berdi Fotouhifar* Department of Plant Protection, Faculty of Agricultural Science and Engineering, College of Agriculture and Natural Resources, University of Tehran, Karaj, 31587-77871, Iran. Abstract: In this study, 32 plant samples with leaf spot symptoms were collected from Chaharmahal and Bakhtiari province, Iran, in the spring and summer of 2018. Isolation and purification of 26 fungal isolates were performed on 2% water agar and potato dextrose agar to identify the causal agents. Fungal species were identified according to morphological characteristics and molecular data obtained from glyceraldehyde 3-phosphate dehydrogenase (gpdh) gene sequences. In this research, 11 species belonging to four genera of hyphomycetous fungi, including Alternaria cantlous, A. consortialis, A. multiformis, Bipolaris sorokiniana, B. zeicola, Curvularia spicifera, C. nicotiae, C. inaequalis, Stemphylium beticola, S. symphyti, and S. vesicarium are introduced. Among them, three species, including C. nicotiae from Salvia officinalis L., S. beticola from Plantago major L., and S. symphyti from Mentha pulegium L., are reported as new records for mycobiota of Iran. All collected plant species are reported as new hosts (matrix nova) for the identified fungal taxa. Keywords: biodiversity, micromycetes, morphology, phylogeny, taxonomy Introduction12 role in human life since the beginning of life on Downloaded from jcp.modares.ac.ir at 12:36 IRST on Saturday September 25th 2021 earth (Razavi, 2015). Nowadays, medicinal plants Chaharmahal and Bakhtiari province, located in are being cultivated and commercialized on a the southwestern part of Iran, is a high-altitude, large-scale, so the number of diseases and their cold and rainy region.