Detours of the Blind Mole-Rat Follow Assessment of Location and Physicalproperties of Underground Obstacles
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Subterranean Mammals Show Convergent Regression in Ocular Genes and Enhancers, Along with Adaptation to Tunneling
RESEARCH ARTICLE Subterranean mammals show convergent regression in ocular genes and enhancers, along with adaptation to tunneling Raghavendran Partha1, Bharesh K Chauhan2,3, Zelia Ferreira1, Joseph D Robinson4, Kira Lathrop2,3, Ken K Nischal2,3, Maria Chikina1*, Nathan L Clark1* 1Department of Computational and Systems Biology, University of Pittsburgh, Pittsburgh, United States; 2UPMC Eye Center, Children’s Hospital of Pittsburgh, Pittsburgh, United States; 3Department of Ophthalmology, University of Pittsburgh School of Medicine, Pittsburgh, United States; 4Department of Molecular and Cell Biology, University of California, Berkeley, United States Abstract The underground environment imposes unique demands on life that have led subterranean species to evolve specialized traits, many of which evolved convergently. We studied convergence in evolutionary rate in subterranean mammals in order to associate phenotypic evolution with specific genetic regions. We identified a strong excess of vision- and skin-related genes that changed at accelerated rates in the subterranean environment due to relaxed constraint and adaptive evolution. We also demonstrate that ocular-specific transcriptional enhancers were convergently accelerated, whereas enhancers active outside the eye were not. Furthermore, several uncharacterized genes and regulatory sequences demonstrated convergence and thus constitute novel candidate sequences for congenital ocular disorders. The strong evidence of convergence in these species indicates that evolution in this environment is recurrent and predictable and can be used to gain insights into phenotype–genotype relationships. DOI: https://doi.org/10.7554/eLife.25884.001 *For correspondence: [email protected] (MC); [email protected] (NLC) Competing interests: The Introduction authors declare that no The subterranean habitat has been colonized by numerous animal species for its shelter and unique competing interests exist. -
What Should We Call the Levant Mole? Unravelling the Systematics and Demography of Talpa Levantis Thomas, 1906 Sensu Lato (Mammalia: Talpidae)
University of Plymouth PEARL https://pearl.plymouth.ac.uk Faculty of Science and Engineering School of Biological and Marine Sciences 2020-03-02 What should we call the Levant mole? Unravelling the systematics and demography of Talpa levantis Thomas, 1906 sensu lato (Mammalia: Talpidae) Demirtas, S http://hdl.handle.net/10026.1/15424 10.1007/s42991-020-00010-4 Mammalian Biology Elsevier All content in PEARL is protected by copyright law. Author manuscripts are made available in accordance with publisher policies. Please cite only the published version using the details provided on the item record or document. In the absence of an open licence (e.g. Creative Commons), permissions for further reuse of content should be sought from the publisher or author. 1 What should we call the Levant mole? Unravelling the systematics and demography of 2 Talpa levantis Thomas, 1906 sensu lato (Mammalia: Talpidae). 3 4 Sadik Demirtaşa, Metin Silsüpüra, Jeremy B. Searleb, David Biltonc,d, İslam Gündüza,* 5 6 aDepartment of Biology, Faculty of Arts and Sciences, Ondokuz Mayis University, Samsun, 7 Turkey. 8 bDepartment of Ecology and Evolutionary Biology, Cornell University, Ithaca, NY, 14853- 9 2701, USA. 10 cMarine Biology and Ecology Research Centre, School of Biological and Marine Sciences, 11 University of Plymouth, Plymouth PL4 8AA, Devon, UK. 12 dDepartment of Zoology, University of Johannesburg, PO Box 524, Auckland Park, 13 Johannesburg 2006, Republic of South Africa 14 15 *Corresponding author. E-mail: [email protected] 16 1 17 Abstract 18 19 Turkey hosts five of the eleven species of Talpa described to date, Anatolia in particular 20 appearing to be an important centre of diversity for this genus. -
Hedgehogs and Other Insectivores
ANIMALS OF THE WORLD Hedgehogs and Other Insectivores What is an insectivore? Do hedgehogs make good pets? What is a mole’s favorite meal? Read Hedgehogs and Other Insectivores to find out! What did you learn? QUESTIONS 1. Shrews live on every continent except ... 4. The largest member of the mole family is a. North America the ... b. Asia and South America a. Blind mole c. Europe b. European mole d. Antarctica and Australia c. Star-nosed mole d. Russian desman mole 2. Moonrats live in ... a. Southeast Asia 5. What type of insectivore is this? b. Southwest Asia c. Southeast Europe d. Southwest Europe 3. The smallest mammal in North America is the ... a. Hedgehog 6. What type of insectivore is this? b. Pygmy shrew c. Mouse d. Rat TRUE OR FALSE? _____ 1. There are 400 kinds of _____ 4. Shrews live about one to two insectivores. years in captivity. _____ 2. Hedgehogs have been known to _____ 5. Solenodons can grow to nearly eat poisonous snakes. 3 feet in length. _____ 3. Hedgehogs do not spit on _____ 6. Hedgehogs make good pets and themselves. can help control pests in gardens and homes. © World Book, Inc. All rights reserved. ANSWERS 1. d. Antarctica and Australia. According 4. d. Russian desman mole. According to section “Where in the World Do Insectivores to section “Which Is the Largest Member of Live?” on page 8, we know that “Insectivores the Mole Family?” on page 46, we know that live almost everywhere. Shrews, for example, “Desmans are larger than moles, growing live on every continent except Australia and to lengths of 14 inches (36 centimeters) from Antarctica.” So, the correct answer is D. -
List of Mammals of France in Latin/English/French
List of Mammals of France in Latin/English/French MAMMALIS MAMMALS MAMMIFRERES LATIN ENGLISH FRENCH INSECTIVORES INSECTIVORES INSECTIVORES Erinaceidés Erinaceidés Erinaceidés Erinaceus Europaeus Western Hedge-Hog Hérisson d’Europe Sorcidés Sorcidés Sorcidés Crocidura Russla Great White-Toothed Shrew Crocidure Mussette Crocidura Suaveolens Lesser White-Toothed Shrew Crocidure des Jardins Crocidura Leucodon Bi-Coloured White-Toothed Shrew Crocidure Leucode Neomys Anomalus Miller’s Water Shrew Musaraigne de Miller Neomys Fodiens Water Shrew Musaraigne Aquatique Sorex Conoatus Millet’s Shrew Musaraigne Couronée Sorex Minutus Pygmy Shrew Musarigne Pygmée Suncus Etruscus Pygmy White-Toothed Shrew Pachyure Etrusque Sorex araneus Common Shrew Musaraigne Carrelet Neomys fodiens European Water Shrew Cross ope Aquatique Crocidura bicolore Bi Coloured White-Toothed Shrew Crocidure bicolore Sorex alpinus Alpine Shrew Musaraigne Alpine Galemys pyrenaicus Pyrenean Desman Desman des Pyrénées Talpidés Talpidés Talpidés Talpa Europae Common Mole Taupe d’Europe Talpa caeca Blind Mole or Mediterranean Mole Taupe Aveugle CHIROPTERES CHIROPTERES CHIROPTERES Rhinolophidés Rhinolophidés Rhinolophidés Rhinolophus Euryale Mediterranean Horse-Shoe Bat Rhinolophe Euryale Rhinolophus Ferrumequinum Greater Horse-Shoe Bat Grand Rhinolphe Rhinolophus Hipposideros Lesser Horse-Shoe Bat Petit Rhinolophe Rhinolophus mehelyi Mediterranean horseshoe bat Rhinolophe de Mehely Vespertiliondés Vespertiliondés Vespertiliondés Barbastella Barbastellus Barbastelle Bat Barbastrelle -
A Genomics Approach Reveals Insights Into the Importance of Gene Losses for Mammalian Adaptations
Corrected: Publisher correction ARTICLE DOI: 10.1038/s41467-018-03667-1 OPEN A genomics approach reveals insights into the importance of gene losses for mammalian adaptations Virag Sharma1,2,3, Nikolai Hecker1,2,3, Juliana G. Roscito1,2,3, Leo Foerster1,2,3, Bjoern E. Langer1,2,3 & Michael Hiller1,2,3 1234567890():,; Identifying the genomic changes that underlie phenotypic adaptations is a key challenge in evolutionary biology and genomics. Loss of protein-coding genes is one type of genomic change with the potential to affect phenotypic evolution. Here, we develop a genomics approach to accurately detect gene losses and investigate their importance for adaptive evolution in mammals. We discover a number of gene losses that likely contributed to morphological, physiological, and metabolic adaptations in aquatic and flying mammals. These gene losses shed light on possible molecular and cellular mechanisms that underlie these adaptive phenotypes. In addition, we show that gene loss events that occur as a consequence of relaxed selection following adaptation provide novel insights into species’ biology. Our results suggest that gene loss is an evolutionary mechanism for adaptation that may be more widespread than previously anticipated. Hence, investigating gene losses has great potential to reveal the genomic basis underlying macroevolutionary changes. 1 Max Planck Institute of Molecular Cell Biology and Genetics, Pfotenhauerstr. 108, 01307 Dresden, Germany. 2 Max Planck Institute for the Physics of Complex Systems, Noethnitzer Str. 38, 01187 Dresden, Germany. 3 Center for Systems Biology Dresden, Pfotenhauerstr. 108, 01307 Dresden, Germany. Correspondence and requests for materials should be addressed to M.H. (email: [email protected]) NATURE COMMUNICATIONS | (2018) 9:1215 | DOI: 10.1038/s41467-018-03667-1 | www.nature.com/naturecommunications 1 ARTICLE NATURE COMMUNICATIONS | DOI: 10.1038/s41467-018-03667-1 ne of the most fascinating aspects of nature is the a b % conserved genes diversity of life. -
Oxygen Stores and Diving Behaviour of the Star-Nosed Mole 47
The Journal of Experimental Biology 205, 45–54 (2002) 45 Printed in Great Britain © The Company of Biologists Limited 2002 JEB3646 Body oxygen stores, aerobic dive limits and diving behaviour of the star-nosed mole (Condylura cristata) and comparisons with non-aquatic talpids Ian W. McIntyre, Kevin L. Campbell and Robert A. MacArthur* Department of Zoology, University of Manitoba, Winnipeg, Manitoba, Canada R3T 2N2 *Author for correspondence (e-mail: [email protected]) Accepted 18 October 2001 Summary The dive performance, oxygen storage capacity and moles Neurotrichus gibbsii (8.8 mg g–1 wet tissue; N=2). The partitioning of body oxygen reserves of one of the world’s mean skeletal muscle Mb content of adult star-nosed moles smallest mammalian divers, the star-nosed mole Condylura was 91.1 % higher than for juveniles of this species cristata, were investigated. On the basis of 722 voluntary (P<0.0001). On the basis of an average diving metabolic –1 –1 dives recorded from 18 captive star-nosed moles, the mean rate of 5.38±0.35 ml O2 g h (N=11), the calculated aerobic dive duration (9.2±0.2 s; mean ± S.E.M.) and maximum dive limit (ADL) of star-nosed moles was 22.8 s for adults recorded dive time (47 s) of this insectivore were and 20.7 s for juveniles. Only 2.9 % of voluntary dives comparable with those of several substantially larger semi- by adult and juvenile star-nosed moles exceeded their aquatic endotherms. Total body O2 stores of adult star- respective calculated ADLs, suggesting that star-nosed nosed moles (34.0 ml kg–1) were 16.4 % higher than for moles rarely exploit anaerobic metabolism while diving, a similarly sized, strictly fossorial coast moles Scapanus conclusion supported by the low buffering capacity of their –1 orarius (29.2 ml kg ), with the greatest differences observed skeletal muscles. -
Mammalian Evolution Underground. the Ecological-Genetic-Phenetic Interfaces
Acta Theriologica, Suppl. 3: 9-31, 1995. PL ISSN 0001-7051 Mammalian evolution underground. The ecological-genetic-phenetic interfaces Eviatar NEVO Nevo E. 1995. Mammalian evolution underground. The ecological-genetic-phenetic interfaces. [In: Ecological genetics in mammals II. G. B. Hartl and J. Markowski, eds]. Acta Theriologica, Suppl. 3: 9-31. The global adaptive convergence of subterranean mammals currently involves 3 orders: rodents, insectivores and marsupials. These include 11 families, 50 genera, and several hundreds of species. This global evolutionary process followed the stepwise climatic cooling and drought followed by biotic extinction in the transition from the middle Eocene to the early Oligocene, a period of 10 million years (35-45 Ma = million years ago) of profound change in earth geology, climate and biota. The earth changed from the Mesozoic "hot house" to the Neogene (Miocene to Present) "cold house", ie from a warm, equable, mostly subtropical world that persisted from the Mesozoic to the beginning of the present glaciated world. The ecological theater of open country biotas, that opened up progressively in the Cenozoic following the Eocene-Oligocene transition, was associated with increasing aridity, colder climate, and terrestrialism. This climatic change set the stage for a rapid evolutionary play of recurrent adaptive radiations of unrelated mammals on all continents into the subterranean ecotope. The subterranean ecotope is relatively simple, stable, specialised, low or medium in productivity, predictable and discontinuous. Its major evolutionary determinants are specialization, competition and isolation. This ecotope involves the herbivorous (ro- dents) and insectivorous (insectivores and marsupials) niches. All subterranean mam- mals share molecular and organismal convergent adaptations to their common unique ecology. -
Systematics, Distribution and Ecological Analysis of Rodents in Jordan
Systematics, distribution and ecological analysis of rodents in Jordan ZUHAIR S. AMR1,2, MOHAMMAD A. ABU BAKER3, MAZIN QUMSIYEH4 & EHAB EID5 1Department of Biology, Jordan University of Science and Technology, P. O. Box 3030, Irbid, Jordan. E-mail: [email protected] 2Corresponding author 2Enviromatics, Environmental Management and Consulting Company, Amman, Jordan, E- mail: [email protected] 3Palestine Museum of Natural History, Bethlehem University, Bethlehem, Palestine, E-mail: [email protected]. 4The Royal Marine Conservation Society of Jordan, Amman, Jordan, E-mail: [email protected] Abstract Distributional and ecological data were given to all rodents of Jordan. The rodent fauna of Jordan consists of 28 species with 20 genera in eight families (Cricetidae, Dipodidae, Gliridae, Hystricidae, Muridae, Myocastoridae, Sciuridae, and Spalacidae), including four introduced species. Keys for families and species were provided, along with diagnosis for each species and cranial illustrations for most species. Habitat preference and zoogeographic affinities of rodents in Jordan were analyzed, as well as their status and conservation. Threat categories and causes of threats on the rodents of Jordan were also analyzed. The distribution of rodents in Jordan represents a reflection of their global distribution ranges and habitat preferences. Species associated with the temperate forest of northern Jordan includes Sciurus anomalus and two wood mice, Apodemus mystacinus and A. flavicollis, while non-forested areas are represented by Nannospalax ehrenbergi and Microtus guentheri. Strict sand dwellers include Gerbillus cheesmani and G. gerbillus. Petrophiles associated with sandstone or black lava deserts are exemplified by Acomys russatus, A. r. lewsi, H. indica and S. calurus. Others including: Jaculus jaculus, G. -
Surface Foraging in Scapanus Moles
Mammalia 2017; aop Vladimir Dinets* Surface foraging in Scapanus moles DOI 10.1515/mammalia-2016-0091 species that forages underwater, underground and on the Received July 3, 2016; accepted November 29, 2016 surface (Condylura; Nowak 1999, Smith and Xie 2013). Western American moles (Scapanus) are believed Abstract: Some mole genera, including Scapanus of west- to be exclusively underground foragers (Stephens 1906 ern North America, are usually considered to be fully fos- and virtually all subsequent works), although they are sorial. I present data showing that surface foraging is used known to forage under snow in winter in colder parts of by adults of all four Scapanus species, and evidence that their range (Pedersen 1963). Regular occurrence of their such foraging is not a particularly rare behavior. Scapanus remains in owl pellets and among animals killed by moles forage on the surface when leaf litter is wet and domestic cats and dogs (Giger 1965, Maser and Brodie does not produce much noise; they also move slowly, 1966) and by other predators (see Carraway et al. 1993 for remain within a small area, and usually forage in places an overview) is interpreted as evidence of either surface with dense cover. These adaptations decrease the risk of dispersal by juveniles (Giger 1965, Verts and Carraway predation and make surface foraging behavior difficult to 2001) or movement of males seeking females (Naughton detect for human observers. Numerous unpublished and 2012). The former view is supported by the fact that almost a few published observations suggest that many, if not all skulls collected from owl and raptor pellets belong to all, species in other “fully fossorial” mole genera forage juveniles (Pedersen 1963, Giger 1965). -
Exceptional Chromosomal Evolution and Cryptic Speciation of Blind Mole Rats Nannospalax Leucodon (Spalacinae, Rodentia) from South-Eastern Europe
Review Exceptional Chromosomal Evolution and Cryptic Speciation of Blind Mole Rats Nannospalax leucodon (Spalacinae, Rodentia) from South-Eastern Europe Ivo Savić 1, Duško Ćirović 1 and Vanja Bugarski-Stanojević 2,* 1 Biological Faculty, University of Belgrade, 11000 Belgrade, Serbia; [email protected] (I.S.); [email protected] (D.Ć.) 2 Institute for Biological Research “Siniša Stanković“, University of Belgrade, 11060 Belgrade, Serbia * Correspondence: [email protected]; Tel.: +381-11-207-8331 Received: 30 August 2017; Accepted: 17 October 2017; Published: 25 October 2017 Abstract: Mole rats are exclusively subterranean and highly specialized rodents. Their long lifespans, remarkable anti-cancer mechanisms, and various distinctive adaptive features make them a useful research model. Moreover, opposing convergence of morphological traits, they have developed extremely high karyotype variability. Thus, 74 chromosomal forms have been described so far and new ones are being revealed continuously. These evolved during the process of rapid radiation and occur in different biogeographical regions. During research into their reproductive biology we have already provided substantial evidence for species-level separation of these taxa. Here, we review diverse chromosomal forms of the lesser blind mole rat, Mediterranean Nannospalax leucodon, distributed in South-eastern Europe, their karyotype records, biogeography, origin, and phylogeny from our extensive research. In the light of new data from molecular genetic studies, we question some former valuations and propose a cryptospecies rank for seven reproductively isolated chromosomal forms with sympatric and parapatric distribution and clear ecogeographical discrepances in their habitats, as well as new experimental and theoretical methods for understanding the courses of speciation of these unique fossorial mammals. -
Speech Research at the University of Atlantis
Proceedings of the Institute of Acoustics MASSIVE MALLEI IN MOLES: MIDDLE EAR ADAPTATIONS SUBSERVING SEISMIC SENSITIVITY MJ Mason Department of Physiology, Development & Neuroscience, University of Cambridge, Cambridge, UK 1 INTRODUCTION It has been popularly assumed, at least since the time of Pliny the Elder [1], that the hearing of moles and other subterranean mammals is acute, perhaps to compensate for their poor vision. In recent times, behavioural audiograms of subterranean species (most studies have been of rodents) have shown that audition is biased towards unusually low frequencies for such small mammals, typically being restricted to under about 20 kHz at 60 dB SPL [2, 3, 4, 5]. Low frequencies of a few hundred Hertz have been found to travel further than higher frequencies underground [6], so efficient low-frequency hearing has been regarded as adaptively advantageous [7, 8, 9]. Several features of the middle ear apparatus identified in subterranean mammals, such as enlarged ear- drums, enlarged bullar cavities and “freely mobile” ossicles, have accordingly been interpreted as adaptations to improve low-frequency hearing [9, 10, 11]. By contrast, other authors have regarded the hearing of subterranean mammals as “degenerate” or “vestigial”: restricted to low frequencies through loss of high frequency hearing, but not unusually acute at any frequency [2, 3, 4]. In principle at least, air-borne sound is not the only source of input to the ears of subterranean mammals. Several species are believed to communicate or navigate using low-frequency ground- borne (seismic) vibrations [12, 13, 14, 15]. The sensory mechanisms subserving this ability are not always clear: in the case of the mole-rat Nannospalax ehrenbergi, whether vibratory sensitivity is primarily conferred by the auditory or somatosensory systems has been a matter of some dispute [12, 16, 17, 18]. -
List of Taxa for Which MIL Has Images
LIST OF 27 ORDERS, 163 FAMILIES, 887 GENERA, AND 2064 SPECIES IN MAMMAL IMAGES LIBRARY 31 JULY 2021 AFROSORICIDA (9 genera, 12 species) CHRYSOCHLORIDAE - golden moles 1. Amblysomus hottentotus - Hottentot Golden Mole 2. Chrysospalax villosus - Rough-haired Golden Mole 3. Eremitalpa granti - Grant’s Golden Mole TENRECIDAE - tenrecs 1. Echinops telfairi - Lesser Hedgehog Tenrec 2. Hemicentetes semispinosus - Lowland Streaked Tenrec 3. Microgale cf. longicaudata - Lesser Long-tailed Shrew Tenrec 4. Microgale cowani - Cowan’s Shrew Tenrec 5. Microgale mergulus - Web-footed Tenrec 6. Nesogale cf. talazaci - Talazac’s Shrew Tenrec 7. Nesogale dobsoni - Dobson’s Shrew Tenrec 8. Setifer setosus - Greater Hedgehog Tenrec 9. Tenrec ecaudatus - Tailless Tenrec ARTIODACTYLA (127 genera, 308 species) ANTILOCAPRIDAE - pronghorns Antilocapra americana - Pronghorn BALAENIDAE - bowheads and right whales 1. Balaena mysticetus – Bowhead Whale 2. Eubalaena australis - Southern Right Whale 3. Eubalaena glacialis – North Atlantic Right Whale 4. Eubalaena japonica - North Pacific Right Whale BALAENOPTERIDAE -rorqual whales 1. Balaenoptera acutorostrata – Common Minke Whale 2. Balaenoptera borealis - Sei Whale 3. Balaenoptera brydei – Bryde’s Whale 4. Balaenoptera musculus - Blue Whale 5. Balaenoptera physalus - Fin Whale 6. Balaenoptera ricei - Rice’s Whale 7. Eschrichtius robustus - Gray Whale 8. Megaptera novaeangliae - Humpback Whale BOVIDAE (54 genera) - cattle, sheep, goats, and antelopes 1. Addax nasomaculatus - Addax 2. Aepyceros melampus - Common Impala 3. Aepyceros petersi - Black-faced Impala 4. Alcelaphus caama - Red Hartebeest 5. Alcelaphus cokii - Kongoni (Coke’s Hartebeest) 6. Alcelaphus lelwel - Lelwel Hartebeest 7. Alcelaphus swaynei - Swayne’s Hartebeest 8. Ammelaphus australis - Southern Lesser Kudu 9. Ammelaphus imberbis - Northern Lesser Kudu 10. Ammodorcas clarkei - Dibatag 11. Ammotragus lervia - Aoudad (Barbary Sheep) 12.