Host-Guest Chemistry Between Cucurbit[7]Uril and Neutral and Cationic Guests
Total Page:16
File Type:pdf, Size:1020Kb
HOST-GUEST CHEMISTRY BETWEEN CUCURBIT[7]URIL AND NEUTRAL AND CATIONIC GUESTS by Ian William Wyman A thesis submitted to the Department of Chemistry In conformity with the requirements for the degree of Doctor of Philosophy. Queen’s University Kingston, Ontario, Canada (January, 2010) Copyright © Ian William Wyman, 2010 Dedicated in memory of my Grandfather, Norman Brannen, 1917-2009. ii Abstract This thesis describes the host-guest chemistry between cucurbit[7]uril (CB[7]) and various series of guests, including neutral polar organic solvents, bis(pyridinium)alkane dications, local anaesthetics, acetylcholine analogues, as well as succinylcholine and decamethonium analogues, in aqueous solution. A focus of this thesis is the effects of varying the chemical structures within different series of guests upon the nature of the host-guest chemistry, such as the relative position and orientation of the guest relative to the CB[7] cavity, and the strengths of the binding affinities. The binding affinities of polar organic solvents with CB[7] depend upon the hydrophobic effect and dipole-quadrupole interactions. The polar guests align themselves so that their dipole moment is perpendicular to the quadrupole moment of CB[7]. The binding strengths of acetone and acetophenone to CB[7] decrease in the presence of alkali metals. Discrete 1:1 and 2:1 host-guest complexes are formed between CB[7] and a series of α,ω -bis(pyridinium)alkane guests. In most cases the CB[7] initially occupies the aliphatic linker when the 1:1 complex is formed and migrates to the terminal regions as the second CB[7] is added. When bulky, hydrophobic tert -butyl substituents are present, however, the CB[7] occupies the terminal pyridinium region and not the central linker. Supramolecular complexes between CB[7] and a series of local anaesthetics have binding affinities 2-3 orders of magnitude greater than reported values with β-cyclodextrin. The first p Ka values of the guests increase by 0.5-1.9 units upon complexation. The binding positions of the guests within CB[7] differ in neutral and acidic media, with the systems thus behaving as pH- activated switches. iii With supramolecular complexes between CB[7] and various cationic cholines and their phosphonium analogues, the CB[7] cavity is occupied by the charge-diffuse cationic region. The binding affinities and positions vary depending on the nature of the onium group as well as the substituents within the guest molecule. Host-guest complexes between CB[7] and dicationic acetylcholinesterase inhibitors have 1:1 binding affinities between 8 x 10 6 and 3 x 10 10 M -1, with 2:1 binding being significantly weaker. These binding affinities are related to the nature of the cationic onium groups, and the length and hydrophobicity of the connecting linkers. iv Acknowledgements I would like to take this opportunity, first and foremost, to thank my supervisor, Dr. Donal Macartney, for his kindness, help, guidance, and patience during my studies. It has been a pleasure studying in his research group. I would also like to thank Dr. Francoise Sauriol for her kindness, helpful discussions, regarding NMR characterizations, and her assistance and training with the instrumentation. In addition, I would like to thank the members of the mass spectrometry facility, which have included Bernd Keller, Jie (Jessie) Sui, Lina Yuan, and Jiaxi Wang for their helpful advice, and for running the high-resolution samples. I wish to also thank the faculty members of the Department of Chemistry for their guidance, excellent teaching and research advice, and also the staff of both the department and Queen’s University. I would like to take this opportunity to thank members of the chemistry office, especially Annette Keyes, for her helpfulness with scholarship and fellowship applications. I also want to thank Lyndsay Hull for loaning chemicals and equipment during the course of my studies here. It has been a pleasure working with members of the Macartney lab, both past and present, including Ruibing Wang, Lina Yuan, Saroja Hettiarachchi, Andrew Fraser, Mona Gamal Eldin, Brendan MacGillivray, Julian Kwok, Antony St-Jacques, Priscilla Leung, and Andrew Carrier. I thank them for their friendship and helpful discussions. I would like to especially take this opportunity to thank my parents, Bill and Diane Wyman, for their love, encouragement, and support. v In addition, I greatly appreciate the financial assistance that has been provided by the Ontario Ministry of Training, Colleges and Universities though the OGS program, as well as to the Walter C. Sumner Foundation, for its support. vi Statement of Originality I hereby certify that all of the work described within this thesis is the original work of the author. Any published (or unpublished) ideas and/or techniques from the work of others are fully acknowledged in accordance with the standard referencing practices. Ian William Wyman January, 2010 vii Table of Contents Abstract .......................................................................................................................................... iii Acknowledgements ..........................................................................................................................v Statement of Originality................................................................................................................ vii Table of Contents ......................................................................................................................... viii List of Figures ............................................................................................................................... xii List of Abbreviations.................................................................................................................. xviii Chapter 1 Introduction .....................................................................................................................1 1.1 Non-covalent interactions ......................................................................................................1 1.1.1 Hydrogen Bonding ..........................................................................................................2 1.1.2 Van der Waals Interactions .............................................................................................3 1.1.3 The Hydrophobic Effect..................................................................................................4 1.1.4 π−π Stacking Interactions ...............................................................................................6 1.1.5 Electrostatic Interactions .................................................................................................8 1.2 Concepts of Supramolecular Chemistry: Molecular Recognition and Self-Assembly, Macrocyclic Hosts, Rotaxanes, and Catenanes....................................................................10 1.2.1 Self-Assembly and Molecular Recognition...................................................................11 1.2.2 Macrocyclic Hosts.........................................................................................................12 1.2.3 Supramolecular Complexes involving Macrocyclic Hosts: Rotaxanes and Catenanes................................................................................................................13 1.3 Supramolecular Characterization .........................................................................................15 1.3.1 Nuclear Magnetic Resonance (NMR) Spectroscopy.....................................................16 1.3.2 UV-visible Spectroscopy...............................................................................................18 1.3.3 X-ray Crystallography...................................................................................................18 1.3.4 Mass Spectrometry........................................................................................................19 1.3.5 Determination of Binding Constants.............................................................................20 1.4 Non-Cucurbituril Macrocyclic Hosts ...................................................................................23 1.4.1 Crown Ethers.................................................................................................................23 1.4.2 Calixarene Hosts ...........................................................................................................27 1.4.3 Porphyrin Hosts.............................................................................................................35 1.4.4 Cyclodextrins ................................................................................................................38 viii 1.5 Cucurbituril Hosts ................................................................................................................42 1.5.1 Cucurbit[6]uril (CB[6]) .................................................................................................46 1.5.2 Cucurbit[5]uril (CB[5]) .................................................................................................56 1.5.3 Cucurbit[7]uril (CB[7]) .................................................................................................59 1.5.4 Cucurbit[8]uril (CB[8]) .................................................................................................65 1.5.5 Cucurbit[10]uril (CB[10]) .............................................................................................71