Experimental Investigation of Tidal and Freshwater Influence on Symbiodiniummuscatinei Abundance in Its Host, Anthopleura Elegantissima
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The 2014 Golden Gate National Parks Bioblitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event
National Park Service U.S. Department of the Interior Natural Resource Stewardship and Science The 2014 Golden Gate National Parks BioBlitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event Natural Resource Report NPS/GOGA/NRR—2016/1147 ON THIS PAGE Photograph of BioBlitz participants conducting data entry into iNaturalist. Photograph courtesy of the National Park Service. ON THE COVER Photograph of BioBlitz participants collecting aquatic species data in the Presidio of San Francisco. Photograph courtesy of National Park Service. The 2014 Golden Gate National Parks BioBlitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event Natural Resource Report NPS/GOGA/NRR—2016/1147 Elizabeth Edson1, Michelle O’Herron1, Alison Forrestel2, Daniel George3 1Golden Gate Parks Conservancy Building 201 Fort Mason San Francisco, CA 94129 2National Park Service. Golden Gate National Recreation Area Fort Cronkhite, Bldg. 1061 Sausalito, CA 94965 3National Park Service. San Francisco Bay Area Network Inventory & Monitoring Program Manager Fort Cronkhite, Bldg. 1063 Sausalito, CA 94965 March 2016 U.S. Department of the Interior National Park Service Natural Resource Stewardship and Science Fort Collins, Colorado The National Park Service, Natural Resource Stewardship and Science office in Fort Collins, Colorado, publishes a range of reports that address natural resource topics. These reports are of interest and applicability to a broad audience in the National Park Service and others in natural resource management, including scientists, conservation and environmental constituencies, and the public. The Natural Resource Report Series is used to disseminate comprehensive information and analysis about natural resources and related topics concerning lands managed by the National Park Service. -
Alexander the Great's Tombolos at Tyre and Alexandria, Eastern Mediterranean ⁎ N
Available online at www.sciencedirect.com Geomorphology 100 (2008) 377–400 www.elsevier.com/locate/geomorph Alexander the Great's tombolos at Tyre and Alexandria, eastern Mediterranean ⁎ N. Marriner a, , J.P. Goiran b, C. Morhange a a CNRS CEREGE UMR 6635, Université Aix-Marseille, Europôle de l'Arbois, BP 80, 13545 Aix-en-Provence cedex 04, France b CNRS MOM Archéorient UMR 5133, 5/7 rue Raulin, 69365 Lyon cedex 07, France Received 25 July 2007; received in revised form 10 January 2008; accepted 11 January 2008 Available online 2 February 2008 Abstract Tyre and Alexandria's coastlines are today characterised by wave-dominated tombolos, peculiar sand isthmuses that link former islands to the adjacent continent. Paradoxically, despite a long history of inquiry into spit and barrier formation, understanding of the dynamics and sedimentary history of tombolos over the Holocene timescale is poor. At Tyre and Alexandria we demonstrate that these rare coastal features are the heritage of a long history of natural morphodynamic forcing and human impacts. In 332 BC, following a protracted seven-month siege of the city, Alexander the Great's engineers cleverly exploited a shallow sublittoral sand bank to seize the island fortress; Tyre's causeway served as a prototype for Alexandria's Heptastadium built a few months later. We report stratigraphic and geomorphological data from the two sand spits, proposing a chronostratigraphic model of tombolo evolution. © 2008 Elsevier B.V. All rights reserved. Keywords: Tombolo; Spit; Tyre; Alexandria; Mediterranean; Holocene 1. Introduction Courtaud, 2000; Browder and McNinch, 2006); (2) establishing a typology of shoreline salients and tombolos (Zenkovich, 1967; The term tombolo is used to define a spit of sand or shingle Sanderson and Eliot, 1996); and (3) modelling the geometrical linking an island to the adjacent coast. -
Anthopleura and the Phylogeny of Actinioidea (Cnidaria: Anthozoa: Actiniaria)
Org Divers Evol (2017) 17:545–564 DOI 10.1007/s13127-017-0326-6 ORIGINAL ARTICLE Anthopleura and the phylogeny of Actinioidea (Cnidaria: Anthozoa: Actiniaria) M. Daly1 & L. M. Crowley2 & P. Larson1 & E. Rodríguez2 & E. Heestand Saucier1,3 & D. G. Fautin4 Received: 29 November 2016 /Accepted: 2 March 2017 /Published online: 27 April 2017 # Gesellschaft für Biologische Systematik 2017 Abstract Members of the sea anemone genus Anthopleura by the discovery that acrorhagi and verrucae are are familiar constituents of rocky intertidal communities. pleisiomorphic for the subset of Actinioidea studied. Despite its familiarity and the number of studies that use its members to understand ecological or biological phe- Keywords Anthopleura . Actinioidea . Cnidaria . Verrucae . nomena, the diversity and phylogeny of this group are poor- Acrorhagi . Pseudoacrorhagi . Atomized coding ly understood. Many of the taxonomic and phylogenetic problems stem from problems with the documentation and interpretation of acrorhagi and verrucae, the two features Anthopleura Duchassaing de Fonbressin and Michelotti, 1860 that are used to recognize members of Anthopleura.These (Cnidaria: Anthozoa: Actiniaria: Actiniidae) is one of the most anatomical features have a broad distribution within the familiar and well-known genera of sea anemones. Its members superfamily Actinioidea, and their occurrence and exclu- are found in both temperate and tropical rocky intertidal hab- sivity are not clear. We use DNA sequences from the nu- itats and are abundant and species-rich when present (e.g., cleus and mitochondrion and cladistic analysis of verrucae Stephenson 1935; Stephenson and Stephenson 1972; and acrorhagi to test the monophyly of Anthopleura and to England 1992; Pearse and Francis 2000). -
PROTISTS Shore and the Waves Are Large, Often the Largest of a Storm Event, and with a Long Period
(seas), and these waves can mobilize boulders. During this phase of the storm the rapid changes in current direction caused by these large, short-period waves generate high accelerative forces, and it is these forces that ultimately can move even large boulders. Traditionally, most rocky-intertidal ecological stud- ies have been conducted on rocky platforms where the substrate is composed of stable basement rock. Projec- tiles tend to be uncommon in these types of habitats, and damage from projectiles is usually light. Perhaps for this reason the role of projectiles in intertidal ecology has received little attention. Boulder-fi eld intertidal zones are as common as, if not more common than, rock plat- forms. In boulder fi elds, projectiles are abundant, and the evidence of damage due to projectiles is obvious. Here projectiles may be one of the most important defi ning physical forces in the habitat. SEE ALSO THE FOLLOWING ARTICLES Geology, Coastal / Habitat Alteration / Hydrodynamic Forces / Wave Exposure FURTHER READING Carstens. T. 1968. Wave forces on boundaries and submerged bodies. Sarsia FIGURE 6 The intertidal zone on the north side of Cape Blanco, 34: 37–60. Oregon. The large, smooth boulders are made of serpentine, while Dayton, P. K. 1971. Competition, disturbance, and community organi- the surrounding rock from which the intertidal platform is formed zation: the provision and subsequent utilization of space in a rocky is sandstone. The smooth boulders are from a source outside the intertidal community. Ecological Monographs 45: 137–159. intertidal zone and were carried into the intertidal zone by waves. Levin, S. A., and R. -
OREGON ESTUARINE INVERTEBRATES an Illustrated Guide to the Common and Important Invertebrate Animals
OREGON ESTUARINE INVERTEBRATES An Illustrated Guide to the Common and Important Invertebrate Animals By Paul Rudy, Jr. Lynn Hay Rudy Oregon Institute of Marine Biology University of Oregon Charleston, Oregon 97420 Contract No. 79-111 Project Officer Jay F. Watson U.S. Fish and Wildlife Service 500 N.E. Multnomah Street Portland, Oregon 97232 Performed for National Coastal Ecosystems Team Office of Biological Services Fish and Wildlife Service U.S. Department of Interior Washington, D.C. 20240 Table of Contents Introduction CNIDARIA Hydrozoa Aequorea aequorea ................................................................ 6 Obelia longissima .................................................................. 8 Polyorchis penicillatus 10 Tubularia crocea ................................................................. 12 Anthozoa Anthopleura artemisia ................................. 14 Anthopleura elegantissima .................................................. 16 Haliplanella luciae .................................................................. 18 Nematostella vectensis ......................................................... 20 Metridium senile .................................................................... 22 NEMERTEA Amphiporus imparispinosus ................................................ 24 Carinoma mutabilis ................................................................ 26 Cerebratulus californiensis .................................................. 28 Lineus ruber ......................................................................... -
The Malay Archipelago
BOOKS & ARTS COMMENT The Malay Archipelago: the land of the orang-utan, and the bird of paradise; a IN RETROSPECT narrative of travel, with studies of man and nature ALFRED RUSSEL WALLACE The Malay Macmillan/Harper Brothers: first published 1869. lfred Russel Wallace was arguably the greatest field biologist of the nine- Archipelago teenth century. He played a leading Apart in the founding of both evolutionary theory and biogeography (see page 162). David Quammen re-enters the ‘Milky Way of He was also, at times, a fine writer. The best land masses’ evoked by Alfred Russel Wallace’s of his literary side is on show in his 1869 classic, The Malay Archipelago, a wondrous masterpiece of biogeography. book of travel and adventure that wears its deeper significance lightly. The Malay Archipelago is the vast chain of islands stretching eastward from Sumatra for more than 6,000 kilometres. Most of it now falls within the sovereignties of Malaysia and Indonesia. In Wallace’s time, it was a world apart, a great Milky Way of land masses and seas and straits, little explored by Europeans, sparsely populated by peoples of diverse cul- tures, and harbouring countless species of unknown plant and animal in dense tropical forests. Some parts, such as the Aru group “Wallace paid of islands, just off the his expenses coast of New Guinea, by selling ERNST MAYR LIB., MUS. COMPARATIVE ZOOLOGY, HARVARD UNIV. HARVARD ZOOLOGY, LIB., MUS. COMPARATIVE MAYR ERNST were almost legend- specimens. So ary for their remote- he collected ness and biological series, not just riches. Wallace’s jour- samples.” neys throughout this region, sometimes by mail packet ship, some- times in a trading vessel or a small outrigger canoe, were driven by a purpose: to collect animal specimens that might help to answer a scientific question. -
Molecular Investigation of the Cnidarian-Dinoflagellate Symbiosis
AN ABSTRACT OF THE DISSERTATION OF Laura Lynn Hauck for the degree of Doctor of Philosophy in Zoology presented on March 20, 2007. Title: Molecular Investigation of the Cnidarian-dinoflagellate Symbiosis and the Identification of Genes Differentially Expressed during Bleaching in the Coral Montipora capitata. Abstract approved: _________________________________________ Virginia M. Weis Cnidarians, such as anemones and corals, engage in an intracellular symbiosis with photosynthetic dinoflagellates. Corals form both the trophic and structural foundation of reef ecosystems. Despite their environmental importance, little is known about the molecular basis of this symbiosis. In this dissertation we explored the cnidarian- dinoflagellate symbiosis from two perspectives: 1) by examining the gene, CnidEF, which was thought to be induced during symbiosis, and 2) by profiling the gene expression patterns of a coral during the break down of symbiosis, which is called bleaching. The first chapter characterizes a novel EF-hand cDNA, CnidEF, from the anemone Anthopleura elegantissima. CnidEF was found to contain two EF-hand motifs. A combination of bioinformatic and molecular phylogenetic analyses were used to compare CnidEF to EF-hand proteins in other organisms. The closest homologues identified from these analyses were a luciferin binding protein involved in the bioluminescence of the anthozoan Renilla reniformis, and a sarcoplasmic calcium- binding protein involved in fluorescence of the annelid worm Nereis diversicolor. Northern blot analysis refuted link of the regulation of this gene to the symbiotic state. The second and third chapters of this dissertation are devoted to identifying those genes that are induced or repressed as a function of coral bleaching. In the first of these two studies we created a 2,304 feature custom DNA microarray platform from a cDNA subtracted library made from experimentally bleached Montipora capitata, which was then used for high-throughput screening of the subtracted library. -
Geographic Names
GEOGRAPHIC NAMES CORRECT ORTHOGRAPHY OF GEOGRAPHIC NAMES ? REVISED TO JANUARY, 1911 WASHINGTON GOVERNMENT PRINTING OFFICE 1911 PREPARED FOR USE IN THE GOVERNMENT PRINTING OFFICE BY THE UNITED STATES GEOGRAPHIC BOARD WASHINGTON, D. C, JANUARY, 1911 ) CORRECT ORTHOGRAPHY OF GEOGRAPHIC NAMES. The following list of geographic names includes all decisions on spelling rendered by the United States Geographic Board to and including December 7, 1910. Adopted forms are shown by bold-face type, rejected forms by italic, and revisions of previous decisions by an asterisk (*). Aalplaus ; see Alplaus. Acoma; township, McLeod County, Minn. Abagadasset; point, Kennebec River, Saga- (Not Aconia.) dahoc County, Me. (Not Abagadusset. AQores ; see Azores. Abatan; river, southwest part of Bohol, Acquasco; see Aquaseo. discharging into Maribojoc Bay. (Not Acquia; see Aquia. Abalan nor Abalon.) Acworth; railroad station and town, Cobb Aberjona; river, IVIiddlesex County, Mass. County, Ga. (Not Ackworth.) (Not Abbajona.) Adam; island, Chesapeake Bay, Dorchester Abino; point, in Canada, near east end of County, Md. (Not Adam's nor Adams.) Lake Erie. (Not Abineau nor Albino.) Adams; creek, Chatham County, Ga. (Not Aboite; railroad station, Allen County, Adams's.) Ind. (Not Aboit.) Adams; township. Warren County, Ind. AJjoo-shehr ; see Bushire. (Not J. Q. Adams.) Abookeer; AhouJcir; see Abukir. Adam's Creek; see Cunningham. Ahou Hamad; see Abu Hamed. Adams Fall; ledge in New Haven Harbor, Fall.) Abram ; creek in Grant and Mineral Coun- Conn. (Not Adam's ties, W. Va. (Not Abraham.) Adel; see Somali. Abram; see Shimmo. Adelina; town, Calvert County, Md. (Not Abruad ; see Riad. Adalina.) Absaroka; range of mountains in and near Aderhold; ferry over Chattahoochee River, Yellowstone National Park. -
Koch 1 Effects of Increased Pco2 Levels on the Nematocyst Densities
Effects of increased pCO2 levels on the nematocyst densities in the symbiotic sea anemone Anthopleura elegantissima Jack C Koch1,2 Marine Invertebrate Zoology Summer A 2014 1Friday Harbor Laboratories, University of Washington, WA 98250 2Department of Biology, University of North Carolina at Wilmington, Wilmington, NC 28407 Contact Information: Jack C Koch Biology Department University of North Carolina at Wilmington 601 South College Road Wilmington, NC 28407 [email protected] Keywords: Anthopleura elegantissima, Aggregating Anemone, Green Aggregating Anemone, ocean acidification, nematocyst, nematocyst density, symbiosis, pCO2 Koch 1 ABSTRACT The temperate sea anemone Anthopleura elegantissima participates in a facultative symbiosis with two genera of unicellular photosynthetic algae. Under stressful conditions such as increased levels of pCO2, anemones expel their algal symbionts causing the anemones to rely more heavily upon heterotrophic feeding. A heavier reliance on heterotrophic feeding could be accomplished by increasing the density of nematocysts. Anthopleura elegantissima individuals were collected from the Friday Harbor Laboratories shoreline (48° 32.7646 N, 123° 00.5932 W), Washington in June 2014, and the number of nematocyst per µg of protein was measured to determine if increasing oceanic pCO2 levels will affect the density of nematocysts. The number of nematocyst per µg of protein was measured again after 7 days in higher (2200 µatm) or ambient (700 µatm) pCO2 conditions. There was no difference in the density of nematocysts between individuals kept in different pCO2 levels. INTRODUCTION The symbiosis between cnidarians and unicellular phototrophic algae can be a facultative or obligate relationship. The cnidarian-algal symbiosis is found worldwide and constitutes an important raw material trade between host and symbiont. -
Transcriptome Analysis of the Reef-Building Octocoral, Heliopora
www.nature.com/scientificreports OPEN Transcriptome analysis of the reef-building octocoral, Heliopora coerulea Received: 25 August 2017 Christine Guzman1,2, Chuya Shinzato3, Tsai-Ming Lu 4 & Cecilia Conaco1 Accepted: 9 May 2018 The blue coral, Heliopora coerulea, is a reef-building octocoral that prefers shallow water and exhibits Published: xx xx xxxx optimal growth at a temperature close to that which causes bleaching in scleractinian corals. To better understand the molecular mechanisms underlying its biology and ecology, we generated a reference transcriptome for H. coerulea using next-generation sequencing. Metatranscriptome assembly yielded 90,817 sequences of which 71% (64,610) could be annotated by comparison to public databases. The assembly included transcript sequences from both the coral host and its symbionts, which are related to the thermotolerant C3-Gulf ITS2 type Symbiodinium. Analysis of the blue coral transcriptome revealed enrichment of genes involved in stress response, including heat-shock proteins and antioxidants, as well as genes participating in signal transduction and stimulus response. Furthermore, the blue coral possesses homologs of biomineralization genes found in other corals and may use a biomineralization strategy similar to that of scleractinians to build its massive aragonite skeleton. These fndings thus ofer insights into the ecology of H. coerulea and suggest gene networks that may govern its interactions with its environment. Octocorals are the most diverse coral group and can be found in various marine environments, including shallow tropical reefs, deep seamounts, and submarine canyons1. Tey reportedly exhibit greater resistance and resil- ience to environmental perturbations, particularly to thermal stress, compared to scleractinians2–4. -
A Comparative Intertidal Study and User Survey, Point Pinos, California
Monterey Bay National Marine Sanctuary A Comparative Intertidal Study and User Survey, Point Pinos, California July 31, 2003 Submitted to: Mr. Dennis Long, Executive Director Monterey Bay Sanctuary Foundation 299 Foam Street Monterey, CA 93940 Prepared and Submitted by: Environmental 225 Prado Rd., Suite D, San Luis Obispo, CA 93401 805.541.0310, FAX: 805.541.0421 Preface In April 2000, the City of Pacific Grove contracted with the Monterey Bay Sanctuary Foundation (MBSF) to serve as the neutral fiscal sponsor for a project to study the impacts of human activities on the rocky intertidal shore and tidepools at Point Pinos. The City created a Point Pinos Tidepool Task Force Subcommittee on Research to develop and oversee the research project and interface with the MBSF. The Subcommittee members were appointed from numerous interested parties with differing views on potential impacts resulting from visitor use. The Subcommittee was responsible for: developing a Request for Proposals (RFP), distributing the RFP to solicit research proposals, and selecting a contractor based on proposed methods and qualifications. The Subcommittee was also responsible for approving the final and more detailed study plan submitted by the selected contractor, reviewing quarterly progress reports, and approving the final report on the project. The RFP, designed to address four primary questions concerning patterns of visitor use, activities, impacts, and past changes at Point Pinos, was circulated to the coastal and marine science communities for solicitation of proposals. Throughout the entire process of proposal review and contractor selection, including project implementation, the Subcommittee required that rigorous science be incorporated into the project plans. -
Drowned Stone Age Settlement of the Bay of Firth, Orkney, Scotland
Drowned Stone Age The Neolithic sites of Orkney settlement of the Bay of are about 5000 years old. They include villages such as Skara Firth, Orkney, Scotland Brae where stone-built furniture may still be seen. CR Wickham-Jones1 S. Dawson2& R Bates3 Report produced in compliance with the requirements of the NGS/Waitt Grant for award no W49-09 Introduction This paper presents the results of geophysical survey and diving work in Skara Brae: Raymond Parks the Bay of Firth, Orkney supported by the NGS/Waitt Grant. This work Tombs such as Maeshowe took place in 2009 with the aim of recording and verifying possible were built for the occupants of the Neolithic villages submerged prehistoric stone structures on the sea bed. The archipelago of Orkney comprises a small Location of area of interest in Bay of Firth, Orkney group of low-lying islands Maeshowe: Sigurd Towrie seven miles to the north of Great stone circles were built in mainland Scotland. It is order to mark the passing of the year and celebrate well known for its festivities archaeology which includes the stone built houses, tombs and monuments that make up the Heart of Neolithic Orkney World Heritage Sites. The archaeology of Orkney is unique both in terms of the range of monuments that have Stones of Stenness: Raymond survived and in terms of the diversity of artefactual material that has been Parks uncovered. 1 University of Aberdeen, [email protected] 2 University of Dundee, [email protected] 3 University of St Andrews, [email protected] 1 Sediment cores may be extracted by hand as here in the Loch of Stenness There is another, less well known, side to Orkney archaeology, however, and that comprises the submerged landscape around the islands.