The Relationship Between Lens Transmission and Opsin Gene Expression in Cichlids from Lake Malawi
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§4-71-6.5 LIST of CONDITIONALLY APPROVED ANIMALS November
§4-71-6.5 LIST OF CONDITIONALLY APPROVED ANIMALS November 28, 2006 SCIENTIFIC NAME COMMON NAME INVERTEBRATES PHYLUM Annelida CLASS Oligochaeta ORDER Plesiopora FAMILY Tubificidae Tubifex (all species in genus) worm, tubifex PHYLUM Arthropoda CLASS Crustacea ORDER Anostraca FAMILY Artemiidae Artemia (all species in genus) shrimp, brine ORDER Cladocera FAMILY Daphnidae Daphnia (all species in genus) flea, water ORDER Decapoda FAMILY Atelecyclidae Erimacrus isenbeckii crab, horsehair FAMILY Cancridae Cancer antennarius crab, California rock Cancer anthonyi crab, yellowstone Cancer borealis crab, Jonah Cancer magister crab, dungeness Cancer productus crab, rock (red) FAMILY Geryonidae Geryon affinis crab, golden FAMILY Lithodidae Paralithodes camtschatica crab, Alaskan king FAMILY Majidae Chionocetes bairdi crab, snow Chionocetes opilio crab, snow 1 CONDITIONAL ANIMAL LIST §4-71-6.5 SCIENTIFIC NAME COMMON NAME Chionocetes tanneri crab, snow FAMILY Nephropidae Homarus (all species in genus) lobster, true FAMILY Palaemonidae Macrobrachium lar shrimp, freshwater Macrobrachium rosenbergi prawn, giant long-legged FAMILY Palinuridae Jasus (all species in genus) crayfish, saltwater; lobster Panulirus argus lobster, Atlantic spiny Panulirus longipes femoristriga crayfish, saltwater Panulirus pencillatus lobster, spiny FAMILY Portunidae Callinectes sapidus crab, blue Scylla serrata crab, Samoan; serrate, swimming FAMILY Raninidae Ranina ranina crab, spanner; red frog, Hawaiian CLASS Insecta ORDER Coleoptera FAMILY Tenebrionidae Tenebrio molitor mealworm, -
Population Genomic Signatures of Divergent Adaptation, Gene Flow And
Genome Biology and Evolution Advance Access published December 15, 2010 doi:10.1093/gbe/evq085 Evolution of MicroRNAs and the Diversification of Species Yong-Hwee E. Loh1, Soojin V. Yi1 and J. Todd Streelman1,* 1 School of Biology, Petit Institute for Bioengineering and Bioscience, Georgia Institute of Technology, Atlanta, GA 30332, USA *Author for Correspondence: J. Todd Streelman School of Biology, Petit Institute for Bioengineering and Bioscience, Georgia Institute of Technology, Atlanta, GA 30332, USA. Tel: (404) 385-4435 Fax: (404) 385-4440 Email: [email protected] Manuscript Information: 33 pages, 1 Table, 4 Figures, 5 Supplementary Files. © The Author(s) 2010. Published by Oxford University Press on behalf of the Society fo r M olecular Biology and Evolution. This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/ 2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. Abstract MicroRNAs (miRNAs) are ancient, short, non-coding RNA molecules that regulate the transcriptome through post-transcriptional mechanisms. miRNA riboregulation is involved in a diverse range of biological processes and mis- regulation is implicated in disease. It is generally thought that miRNAs function to canalize cellular outputs, for instance as ‘fail-safe’ repressors of gene mis- expression. Genomic surveys in humans have revealed reduced genetic polymorphism and the signature of negative selection for both miRNAs themselves and the target sequences to which they are predicted to bind. We investigated the evolution of miRNAs and their binding sites across cichlid fishes from Lake Malawi (East Africa), where hundreds of diverse species have evolved in the last million years. -
Cichlid Diversity, Speciation and Systematics: Examples from the Great African Lakes
Cichlid diversity, speciation and systematics: examples from the Great African Lakes Jos Snoeks, Africa Museum, Ichthyology- Cichlid Research Unit, Leuvensesteenweg 13, B-3080 Ter vuren,.Belgium. Tel: (32) 2 769 56 28, Fax: (32) 2 769 56 42(e-mail: [email protected]) ABSTRACT The cichlid faunas of the large East African lakes pro vide many fascina ting research tapies. They are unique because of the large number of species involved and the ir exceptional degree ofendemicity. In addition, certain taxa exhibit a substantial degree of intra~lacustrine endemism. These features al one make the Great African Lakes the largest centers of biodiversity in the vertebrate world. The numbers of cichlid species in these lakes are considered from different angles. A review is given of the data available on the tempo of their speciation, and sorne of the biological implications of its explosive character are discussed. The confusion in the definition of many genera is illustrated and the current methodology of phylogenetic research briefly commented upon. Theresults of the systematic research within the SADC/GEFLake Malawi/NyasaBiodiversity Conservation Project are discussed. It is argued that systematic research on the East African lake cichlids is entering an era of lesser chaos but increasing complexity. INTRODUCTION The main value of the cichlids of the Great African Grea ter awareness of the scientific and economi Lakes is their economie importance as a readily cal value of these fishes has led to the establishment accessible source of protein for the riparian people. In of varioüs recent research projects such as the three addition, these fishes are important to the specialized GEF (Global Environmental Facility) projects on the aquarium trade as one of the more exci ting fish groups larger lakes (Victoria, Tanganyika, Malawi/Nyasa). -
Fish, Various Invertebrates
Zambezi Basin Wetlands Volume II : Chapters 7 - 11 - Contents i Back to links page CONTENTS VOLUME II Technical Reviews Page CHAPTER 7 : FRESHWATER FISHES .............................. 393 7.1 Introduction .................................................................... 393 7.2 The origin and zoogeography of Zambezian fishes ....... 393 7.3 Ichthyological regions of the Zambezi .......................... 404 7.4 Threats to biodiversity ................................................... 416 7.5 Wetlands of special interest .......................................... 432 7.6 Conservation and future directions ............................... 440 7.7 References ..................................................................... 443 TABLE 7.2: The fishes of the Zambezi River system .............. 449 APPENDIX 7.1 : Zambezi Delta Survey .................................. 461 CHAPTER 8 : FRESHWATER MOLLUSCS ................... 487 8.1 Introduction ................................................................. 487 8.2 Literature review ......................................................... 488 8.3 The Zambezi River basin ............................................ 489 8.4 The Molluscan fauna .................................................. 491 8.5 Biogeography ............................................................... 508 8.6 Biomphalaria, Bulinis and Schistosomiasis ................ 515 8.7 Conservation ................................................................ 516 8.8 Further investigations ................................................. -
Spatial Models of Speciation 1.0Cm Modelos Espaciais De Especiação
UNIVERSIDADE ESTADUAL DE CAMPINAS INSTITUTO DE BIOLOGIA CAROLINA LEMES NASCIMENTO COSTA SPATIAL MODELS OF SPECIATION MODELOS ESPACIAIS DE ESPECIAÇÃO CAMPINAS 2019 CAROLINA LEMES NASCIMENTO COSTA SPATIAL MODELS OF SPECIATION MODELOS ESPACIAIS DE ESPECIAÇÃO Thesis presented to the Institute of Biology of the University of Campinas in partial fulfill- ment of the requirements for the degree of Doc- tor in Ecology Tese apresentada ao Instituto de Biologia da Universidade Estadual de Campinas como parte dos requisitos exigidos para a obtenção do título de Doutora em Ecologia Orientador: Marcus Aloizio Martinez de Aguiar ESTE ARQUIVO DIGITAL CORRESPONDE À VERSÃO FINAL DA TESE DEFENDIDA PELA ALUNA CAROLINA LEMES NASCIMENTO COSTA, E ORIENTADA PELO PROF DR. MAR- CUS ALOIZIO MARTINEZ DE AGUIAR. CAMPINAS 2019 Ficha catalográfica Universidade Estadual de Campinas Biblioteca do Instituto de Biologia Mara Janaina de Oliveira - CRB 8/6972 Costa, Carolina Lemes Nascimento, 1989- C823s CosSpatial models of speciation / Carolina Lemes Nascimento Costa. – Campinas, SP : [s.n.], 2019. CosOrientador: Marcus Aloizio Martinez de Aguiar. CosTese (doutorado) – Universidade Estadual de Campinas, Instituto de Biologia. Cos1. Especiação. 2. Radiação adaptativa (Evolução). 3. Modelos biológicos. 4. Padrão espacial. 5. Macroevolução. I. Aguiar, Marcus Aloizio Martinez de, 1960-. II. Universidade Estadual de Campinas. Instituto de Biologia. III. Título. Informações para Biblioteca Digital Título em outro idioma: Modelos espaciais de especiação Palavras-chave em inglês: Speciation Adaptive radiation (Evolution) Biological models Spatial pattern Macroevolution Área de concentração: Ecologia Titulação: Doutora em Ecologia Banca examinadora: Marcus Aloizio Martinez de Aguiar [Orientador] Mathias Mistretta Pires Sabrina Borges Lino Araujo Rodrigo André Caetano Gustavo Burin Ferreira Data de defesa: 25-02-2019 Programa de Pós-Graduação: Ecologia Powered by TCPDF (www.tcpdf.org) Comissão Examinadora: Prof. -
Downloaded on 2019-01-07T05:41:17Z Fmicb-09-00873 May 4, 2018 Time: 12:22 # 1
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Cork Open Research Archive Title The gut microbiota of marine fish Author(s) Egerton, Sian; Culloty, Sarah; Whooley, Jason; Stanton, Catherine; Ross, R. Paul Original citation Egerton, S., Culloty, S., Whooley, J., Stanton, C. and Ross, R. P. (2018) 'The gut microbiota of marine fish', Frontiers in Microbiology, 9, 873 (17pp). doi: 10.3389/fmicb.2018.00873 Type of publication Article (peer-reviewed) Link to publisher's https://www.frontiersin.org/articles/10.3389/fmicb.2018.00873/full version http://dx.doi.org/10.3389/fmicb.2018.00873 Access to the full text of the published version may require a subscription. Rights © 2018, Egerton, Culloty, Whooley, Stanton and Ross. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. https://creativecommons.org/licenses/by/4.0/ Item downloaded http://hdl.handle.net/10468/6222 from Downloaded on 2019-01-07T05:41:17Z fmicb-09-00873 May 4, 2018 Time: 12:22 # 1 REVIEW published: 04 May 2018 doi: 10.3389/fmicb.2018.00873 The Gut Microbiota of Marine Fish Sian Egerton1,2, Sarah Culloty2,3, Jason Whooley4, Catherine Stanton5,6 and R. Paul Ross1,5,6* 1 School of Microbiology, University College Cork, Cork, Ireland, 2 School of Biological, Earth and Environmental Sciences, University College Cork, Cork, Ireland, 3 Environmental Research Institute, University College Cork, Cork, Ireland, 4 Bio-marine Ingredients Ireland Ltd., Killybegs, Ireland, 5 Teagasc Research Centre, Fermoy, Ireland, 6 APC Microbiome Ireland, Teagasc and University College Cork, Cork, Ireland The body of work relating to the gut microbiota of fish is dwarfed by that on humans and mammals. -
Personality, Habitat Selection and Territoriality Kathleen Church A
Habitat Complexity and Behaviour: Personality, Habitat Selection and Territoriality Kathleen Church A Thesis In the Department of Biology Presented in Partial Fulfilment of the Requirements For the Degree of Doctor of Philosophy (Biology) at Concordia University Montréal, Québec, Canada July 2018 © Kathleen Church, 2018 iii Abstract Habitat complexity and behaviour: personality, habitat selection and territoriality Kathleen Church, Ph.D. Concordia University, 2018 Structurally complex habitats support high species diversity and promote ecosystem health and stability, however anthropogenic activity is causing natural forms of complexity to rapidly diminish. At the population level, reductions in complexity negatively affect densities of territorial species, as increased visual distance increases the territory size of individuals. Individual behaviour, including aggression, activity and boldness, is also altered by complexity, due to plastic behavioural responses to complexity, habitat selection by particular personality types, or both processes occurring simultaneously. This thesis explores the behavioural effects of habitat complexity in four chapters. The first chapter, a laboratory experiment based on the ideal free distribution, observes how convict cichlids (Amatitlania nigrofasciata) trade-off the higher foraging success obtainable in open habitats with the greater safety provided in complex habitats under overt predation threat. Dominants always preferred the complex habitat, forming ideal despotic distributions, while subordinates altered their habitat use in response to predation. The second chapter also employs the ideal free distribution to assess how convict cichlids within a dominance hierarchy trade-off between food monopolization and safety in the absence of a iv predator. Dominants again formed ideal despotic distributions in the complex habitat, while dominants with lower energetic states more strongly preferred the complex habitat. -
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CICHLIFORMES: Cichlidae (part 5) · 1 The ETYFish Project © Christopher Scharpf and Kenneth J. Lazara COMMENTS: v. 10.0 - 11 May 2021 Order CICHLIFORMES (part 5 of 8) Family CICHLIDAE Cichlids (part 5 of 7) Subfamily Pseudocrenilabrinae African Cichlids (Palaeoplex through Yssichromis) Palaeoplex Schedel, Kupriyanov, Katongo & Schliewen 2020 palaeoplex, a key concept in geoecodynamics representing the total genomic variation of a given species in a given landscape, the analysis of which theoretically allows for the reconstruction of that species’ history; since the distribution of P. palimpsest is tied to an ancient landscape (upper Congo River drainage, Zambia), the name refers to its potential to elucidate the complex landscape evolution of that region via its palaeoplex Palaeoplex palimpsest Schedel, Kupriyanov, Katongo & Schliewen 2020 named for how its palaeoplex (see genus) is like a palimpsest (a parchment manuscript page, common in medieval times that has been overwritten after layers of old handwritten letters had been scraped off, in which the old letters are often still visible), revealing how changes in its landscape and/or ecological conditions affected gene flow and left genetic signatures by overwriting the genome several times, whereas remnants of more ancient genomic signatures still persist in the background; this has led to contrasting hypotheses regarding this cichlid’s phylogenetic position Pallidochromis Turner 1994 pallidus, pale, referring to pale coloration of all specimens observed at the time; chromis, a name -
Patterns and Process During the Diversification of the Cichlid Fishes in Lake Malawi, Africa Michael R
University of New Hampshire University of New Hampshire Scholars' Repository Doctoral Dissertations Student Scholarship Fall 2006 Patterns and process during the diversification of the cichlid fishes in Lake Malawi, Africa Michael R. Kidd University of New Hampshire, Durham Follow this and additional works at: https://scholars.unh.edu/dissertation Recommended Citation Kidd, Michael R., "Patterns and process during the diversification of the cichlid fishes in Lake Malawi, Africa" (2006). Doctoral Dissertations. 342. https://scholars.unh.edu/dissertation/342 This Dissertation is brought to you for free and open access by the Student Scholarship at University of New Hampshire Scholars' Repository. It has been accepted for inclusion in Doctoral Dissertations by an authorized administrator of University of New Hampshire Scholars' Repository. For more information, please contact [email protected]. PATTERNS AND PROCESS DURING THE DIVERSIFICATION OF THE CICHLID FISHES IN LAKE MALAWI, AFRICA BY MICHAEL R. KIDD BA, Williams College, 1991 DISSERTATION Submitted to the University of New Hampshire In Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy in Zoology September, 2006 Reproduced with permission of the copyright owner. Further reproduction prohibited without permission. UMI Number: 3231355 Copyright 2006 by Kidd, Michael R. All rights reserved. INFORMATION TO USERS The quality of this reproduction is dependent upon the quality of the copy submitted. Broken or indistinct print, colored or poor quality illustrations and photographs, print bleed-through, substandard margins, and improper alignment can adversely affect reproduction. In the unlikely event that the author did not send a complete manuscript and there are missing pages, these will be noted. -
Checklist of the Cichlid Fishes of Lake Malawi (Lake Nyasa)
Checklist of the Cichlid Fishes of Lake Malawi (Lake Nyasa/Niassa) by M.K. Oliver, Ph.D. ––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––– Checklist of the Cichlid Fishes of Lake Malawi (Lake Nyasa/Niassa) by Michael K. Oliver, Ph.D. Peabody Museum of Natural History, Yale University Updated 24 June 2020 First posted June 1999 The cichlids of Lake Malawi constitute the largest vertebrate species flock and largest lacustrine fish fauna on earth. This list includes all cichlid species, and the few subspecies, that have been formally described and named. Many–several hundred–additional endemic cichlid species are known but still undescribed, and this fact must be considered in assessing the biodiversity of the lake. Recent estimates of the total size of the lake’s cichlid fauna, counting both described and known but undescribed species, range from 700–843 species (Turner et al., 2001; Snoeks, 2001; Konings, 2007) or even 1000 species (Konings 2016). Additional undescribed species are still frequently being discovered, particularly in previously unexplored isolated locations and in deep water. The entire Lake Malawi cichlid metaflock is composed of two, possibly separate, endemic assemblages, the “Hap” group and the Mbuna group. Neither has been convincingly shown to be monophyletic. Membership in one or the other, or nonendemic status, is indicated in the checklist below for each genus, as is the type species of each endemic genus. The classification and synonymies are primarily based on the Catalog of Fishes with a few deviations. All synonymized genera and species should now be listed under their senior synonym. Nearly all species are endemic to L. Malawi, in some cases extending also into the upper Shiré River including Lake Malombe and even into the middle Shiré. -
Did Hypertrophied Lips Evolve Once Or Repeatedly in Lake Malawi Cichlid Fishes?
UCLA UCLA Previously Published Works Title Phylogenomics of a putatively convergent novelty: did hypertrophied lips evolve once or repeatedly in Lake Malawi cichlid fishes? Permalink https://escholarship.org/uc/item/9k27g6qm Journal BMC evolutionary biology, 18(1) ISSN 1471-2148 Authors Darrin Hulsey, C Zheng, Jimmy Holzman, Roi et al. Publication Date 2018-11-29 DOI 10.1186/s12862-018-1296-9 Peer reviewed eScholarship.org Powered by the California Digital Library University of California Darrin Hulsey et al. BMC Evolutionary Biology (2018) 18:179 https://doi.org/10.1186/s12862-018-1296-9 RESEARCH ARTICLE Open Access Phylogenomics of a putatively convergent novelty: did hypertrophied lips evolve once or repeatedly in Lake Malawi cichlid fishes? C. Darrin Hulsey1* , Jimmy Zheng2, Roi Holzman3, Michael E. Alfaro2, Melisa Olave1 and Axel Meyer1 Abstract Background: Phylogenies provide critical information about convergence during adaptive radiation. To test whether there have been multiple origins of a distinctive trophic phenotype in one of the most rapidly radiating groups known, we used ultra-conserved elements (UCEs) to examine the evolutionary affinities of Lake Malawi cichlids lineages exhibiting greatly hypertrophied lips. Results: The hypertrophied lip cichlids Cheilochromis euchilus, Eclectochromis ornatus, Placidochromis “Mbenji fatlip”, and Placidochromis milomo areallnestedwithinthenon-mbunacladeofMalawi cichlids based on both concatenated sequence and single nucleotide polymorphism (SNP) inferred phylogenies. Lichnochromis acuticeps that exhibits slightly hypertrophied lips also appears to have evolutionary affinities to this group. However, Chilotilapia rhoadesii that lacks hypertrophied lips was recovered as nested within the species Cheilochromis euchilus. Species tree reconstructions and analyses of introgression provided largely ambiguous patterns of Malawi cichlid evolution. -
International Journal of Fisheries and Aquaculture
OPEN ACCESS International Journal of Fisheries and Aquaculture February 2019 ISSN 2006-9839 DOI: 10.5897/IJFA www.academicjournals.org ABOUT IJFA The International Journal of Fisheries and Aquaculture (IJFA) (ISSN: 2006-9839) is an open access journal that provides rapid publication (monthly) of articles in all areas of the subject such as algaculture, Mariculture, fishery in terms of ecosystem health, Fisheries acoustics etc. The Journal welcomes the submission of manuscripts that meet the general criteria of significance and scientific excellence. Papers will be published shortly after acceptance. All articles published in the IJFA are peer-reviewed. Contact Us Editorial Office: [email protected] Help Desk: [email protected] Website: http://www.academicjournals.org/journal/IJFA Submit manuscript online http://ms.academicjournals.me/ Editors Dr. V.S. Chandrasekaran Central Institute of Brackishwater Aquaculture Indian Council of Agricultural Research (ICAR) Chennai, India. Prof. Nihar Rajan Chattopadhyay Department of Aquaculture Faculty of Fishery Sciences West Bengal University of Animal & Fishery Sciences West Bengal, India. Dr. Lourdes Jimenez-Badillo Ecology and Fisheries Centre Universidad Veracruzana Veracruz, México. Dr. Kostas Kapiris Institute of Marine Biological Resources of H.C.M.R. Athens, Greece. Dr. Masoud Hedayatifard Department of Fisheries Sciences and Aquaculture College of Agriculture and Natural Resources Advanced Education Center Islamic Azad University Ghaemshahr, Iran. Dr. Zhang Xiaoshuan China Agricultural University Beijing, China. Dr Joseph Selvin Marine Bioprospecting Lab Dept of Microbiology Bharathidasan University Tiruchirappalli, India. Dr. Sebastián Villasante Editorial Board Fisheries Economics and Natural Resources Research Unit University of Santiago de Compostela Dr. Dada Adekunle Ayokanmi A Coruña, Department of Fisheries and Aquaculture Spain.