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Ecology and Ex Situ Conservation of Vanilla Siamensis (Rolfe Ex Downie) in Thailand
Kent Academic Repository Full text document (pdf) Citation for published version Chaipanich, Vinan Vince (2020) Ecology and Ex Situ Conservation of Vanilla siamensis (Rolfe ex Downie) in Thailand. Doctor of Philosophy (PhD) thesis, University of Kent,. DOI Link to record in KAR https://kar.kent.ac.uk/85312/ Document Version UNSPECIFIED Copyright & reuse Content in the Kent Academic Repository is made available for research purposes. Unless otherwise stated all content is protected by copyright and in the absence of an open licence (eg Creative Commons), permissions for further reuse of content should be sought from the publisher, author or other copyright holder. Versions of research The version in the Kent Academic Repository may differ from the final published version. Users are advised to check http://kar.kent.ac.uk for the status of the paper. Users should always cite the published version of record. Enquiries For any further enquiries regarding the licence status of this document, please contact: [email protected] If you believe this document infringes copyright then please contact the KAR admin team with the take-down information provided at http://kar.kent.ac.uk/contact.html Ecology and Ex Situ Conservation of Vanilla siamensis (Rolfe ex Downie) in Thailand By Vinan Vince Chaipanich November 2020 A thesis submitted to the University of Kent in the School of Anthropology and Conservation, Faculty of Social Sciences for the degree of Doctor of Philosophy Abstract A loss of habitat and climate change raises concerns about change in biodiversity, in particular the sensitive species such as narrowly endemic species. Vanilla siamensis is one such endemic species. -
Orchid Historical Biogeography, Diversification, Antarctica and The
Journal of Biogeography (J. Biogeogr.) (2016) ORIGINAL Orchid historical biogeography, ARTICLE diversification, Antarctica and the paradox of orchid dispersal Thomas J. Givnish1*, Daniel Spalink1, Mercedes Ames1, Stephanie P. Lyon1, Steven J. Hunter1, Alejandro Zuluaga1,2, Alfonso Doucette1, Giovanny Giraldo Caro1, James McDaniel1, Mark A. Clements3, Mary T. K. Arroyo4, Lorena Endara5, Ricardo Kriebel1, Norris H. Williams5 and Kenneth M. Cameron1 1Department of Botany, University of ABSTRACT Wisconsin-Madison, Madison, WI 53706, Aim Orchidaceae is the most species-rich angiosperm family and has one of USA, 2Departamento de Biologıa, the broadest distributions. Until now, the lack of a well-resolved phylogeny has Universidad del Valle, Cali, Colombia, 3Centre for Australian National Biodiversity prevented analyses of orchid historical biogeography. In this study, we use such Research, Canberra, ACT 2601, Australia, a phylogeny to estimate the geographical spread of orchids, evaluate the impor- 4Institute of Ecology and Biodiversity, tance of different regions in their diversification and assess the role of long-dis- Facultad de Ciencias, Universidad de Chile, tance dispersal (LDD) in generating orchid diversity. 5 Santiago, Chile, Department of Biology, Location Global. University of Florida, Gainesville, FL 32611, USA Methods Analyses use a phylogeny including species representing all five orchid subfamilies and almost all tribes and subtribes, calibrated against 17 angiosperm fossils. We estimated historical biogeography and assessed the -
Systematics, Phylogeography, Fungal Associations, and Photosynthesis
Systematics, Phylogeography, Fungal Associations, and Photosynthesis Gene Evolution in the Fully Mycoheterotrophic Corallorhiza striata Species Complex (Orchidaceae: Epidendroideae) Dissertation Presented in Partial Fulfillment of the Requirements for the Degree Doctor of Philosophy in the Graduate School of the Ohio State University By Craig Francis Barrett, M. S. Evolution, Ecology, and Organismal Biology ***** The Ohio State University 2010 Dissertation Committee: Dr. John V. Freudenstein, Advisor Dr. John W. Wenzel Dr. Andrea D. Wolfe Copyright by Craig Francis Barrett 2010 ABSTRACT Corallorhiza is a genus of obligately mycoheterotrophic (fungus-eating) orchids that presents a unique opportunity to study phylogeography, taxonomy, fungal host specificity, and photosynthesis gene evolution. The photosysnthesis gene rbcL was sequenced for nearly all members of the genus Corallorhiza; evidence for pseudogene formation was found in both the C. striata and C. maculata complexes, suggesting multiple independent transitions to complete heterotrophy. Corallorhiza may serve as an exemplary system in which to study the plastid genomic consequences of full mycoheterotrophy due to relaxed selection on photosynthetic apparatus. Corallorhiza striata is a highly variable species complex distributed from Mexico to Canada. In an investigation of molecular and morphological variation, four plastid DNA clades were identified, displaying statistically significant differences in floral morphology. The biogeography of C. striata is more complex than previously hypothesized, with two main plastid lineages present in both Mexico and northern North America. These findings add to a growing body of phylogeographic data on organisms sharing this common distribution. To investigate fungal host specificity in the C. striata complex, I sequenced plastid DNA for orchids and nuclear DNA for fungi (n=107 individuals), and found that ii the four plastid clades associate with divergent sets of ectomycorrhizal fungi; all within a single, variable species, Tomentella fuscocinerea. -
Northern Gulf, Queensland
Biodiversity Summary for NRM Regions Species List What is the summary for and where does it come from? This list has been produced by the Department of Sustainability, Environment, Water, Population and Communities (SEWPC) for the Natural Resource Management Spatial Information System. The list was produced using the AustralianAustralian Natural Natural Heritage Heritage Assessment Assessment Tool Tool (ANHAT), which analyses data from a range of plant and animal surveys and collections from across Australia to automatically generate a report for each NRM region. Data sources (Appendix 2) include national and state herbaria, museums, state governments, CSIRO, Birds Australia and a range of surveys conducted by or for DEWHA. For each family of plant and animal covered by ANHAT (Appendix 1), this document gives the number of species in the country and how many of them are found in the region. It also identifies species listed as Vulnerable, Critically Endangered, Endangered or Conservation Dependent under the EPBC Act. A biodiversity summary for this region is also available. For more information please see: www.environment.gov.au/heritage/anhat/index.html Limitations • ANHAT currently contains information on the distribution of over 30,000 Australian taxa. This includes all mammals, birds, reptiles, frogs and fish, 137 families of vascular plants (over 15,000 species) and a range of invertebrate groups. Groups notnot yet yet covered covered in inANHAT ANHAT are notnot included included in in the the list. list. • The data used come from authoritative sources, but they are not perfect. All species names have been confirmed as valid species names, but it is not possible to confirm all species locations. -
44347813008.Pdf
LANKESTERIANA 16(2): 255–267. 2016. doi: http://dx.doi.org/10.15517/lank.v16i2.26010 RECENT ADVANCES ON EVOLUTION OF POLLINATION SYSTEMS AND REPRODUCTIVE BIOLOGY OF VANILLOIDEAE (ORCHIDACEAE) EMERSON R. PANSARIN Departamento de Biologia, Faculdade de Filosofia, Ciências e Letras, Universidade de São Paulo, Av. Bandeirantes 3900, 14040-901, Ribeirão Preto, SP, Brazil • [email protected] ABSTRACT. Vanilloideae as currently circumscribed comprises nine genera and two tribes: Vanilleae and Pogonieae. The pantropical genus Vanilla has been frequently assumed to be natural on the basis of its climbing habit and lateral inflorescences. However, the inclusion of the rareDictyophyllaria dietschiana in phylogenetic analyses makes the genus Vanilla paraphyletic. Within Pogonieae, phylogenetic analyses show that inclusion of Pogoniopsis turns the tribe paraphyletic. All analyses reveal that Pogoniopsis is closely related to members of Epidendroideae. Members of Pogonieae are pollinated by several groups of solitary and social bees, two pollination systems being recognized: reward-producing and deceptive. Molecular phylogeny suggests that the common ancestor to Pogonieae gave rise to two evolutionary lineages: one tropical with a condition of reward production; and one predominantly temperate-invading line with deceptive flowers. Reward-producing flowers characterize South and Central American clade (= Cleistes), while deceptive pollination is prominent in the clade including North American-Asiatic taxa plus Amazonian Duckeella. Species of “orchid bees” have been recorded as pollinators of the genus Vanilla (V. planifolia group and V. pompona group) in the Neotropics. In species of the V. pompona group, these bees are attracted by the fragrance of the flowers. Hummingbirds have been reported to pollinate some species of Vanilla. -
Plant Biodiversity Science, Discovery, and Conservation: Case Studies from Australasia and the Pacific
Plant Biodiversity Science, Discovery, and Conservation: Case Studies from Australasia and the Pacific Craig Costion School of Earth and Environmental Sciences Department of Ecology and Evolutionary Biology University of Adelaide Adelaide, SA 5005 Thesis by publication submitted for the degree of Doctor of Philosophy in Ecology and Evolutionary Biology July 2011 ABSTRACT This thesis advances plant biodiversity knowledge in three separate bioregions, Micronesia, the Queensland Wet Tropics, and South Australia. A systematic treatment of the endemic flora of Micronesia is presented for the first time thus advancing alpha taxonomy for the Micronesia-Polynesia biodiversity hotspot region. The recognized species boundaries are used in combination with all known botanical collections as a basis for assessing the degree of threat for the endemic plants of the Palau archipelago located at the western most edge of Micronesia’s Caroline Islands. A preliminary assessment is conducted utilizing the IUCN red list Criteria followed by a new proposed alternative methodology that enables a degree of threat to be established utilizing existing data. Historical records and archaeological evidence are reviewed to establish the minimum extent of deforestation on the islands of Palau since the arrival of humans. This enabled a quantification of population declines of the majority of plants endemic to the archipelago. In the state of South Australia, the importance of establishing concepts of endemism is emphasized even further. A thorough scientific assessment is presented on the state’s proposed biological corridor reserve network. The report highlights the exclusion from the reserve system of one of the state’s most important hotspots of plant endemism that is highly threatened from habitat fragmentation and promotes the use of biodiversity indices to guide conservation priorities in setting up reserve networks. -
Systematics of African Vanilla Orchids
SYSTEMATICS OF AFRICAN VANILLA ORCHIDS LINKING MORPHOLOGICAL CLASSIFICATION AND DNA-BASED PHYLOGENY SARA VAN DE KERKE MSC THESIS - 2014 Sara van de Kerke Registration number: 881211 428110 Email: [email protected] MSc thesis Biodiversity and Evolution - BIS-80430 Supervisors: Jan Wieringa, Freek Bakker & Theo Damen - Biosystematics Group Wageningen University Barbara Gravendeel – Naturalis Biodiversity Center i PREFACE In this MSc Thesis, I looked into a small part of one of the genera from this large and intriguing orchid family: Vanilla. I applied both a ‘classical morphological’ as well as a DNA-based approach. These are quite different approaches and thus different research methods were needed. Therefore, both fields will be discussed separately with their own introduction, material and methods, results and discussion sections. Of course, I will also link both fields in a final discussion and conclusion. Since this was quite a large project with many different aspects that did not always work out the way it was first anticipated, I chose to include all these aspects in this thesis. The thesis is thus outlined in chronological order including discussions about failed research methods and not built up in a strict scientific form. Of course, I have had a lot of help during this project. First and foremost, I want to thank my supervisors Freek T. Bakker, Jan Wieringa, Theo Damen and Barbara Gravendeel for their guidance and constant support during this long-term project. I especially want to thank Aline Nieman, Bertha Koopmanschap -
A Comparison and Combination of Plastid Atpb and Rbcl Gene Sequences for Inferring Phylogenetic Relationships Within Orchidaceae Kenneth M
Aliso: A Journal of Systematic and Evolutionary Botany Volume 22 | Issue 1 Article 36 2006 A Comparison and Combination of Plastid atpB and rbcL Gene Sequences for Inferring Phylogenetic Relationships within Orchidaceae Kenneth M. Cameron New York Botanical Garden Follow this and additional works at: http://scholarship.claremont.edu/aliso Part of the Botany Commons Recommended Citation Cameron, Kenneth M. (2006) "A Comparison and Combination of Plastid atpB and rbcL Gene Sequences for Inferring Phylogenetic Relationships within Orchidaceae," Aliso: A Journal of Systematic and Evolutionary Botany: Vol. 22: Iss. 1, Article 36. Available at: http://scholarship.claremont.edu/aliso/vol22/iss1/36 MONOCOTS Comparative Biology and Evolution Excluding Poales Aliso 22, pp. 447-464 © 2006, Rancho Santa Ana Botanic Garden A COMPARISON AND COMBINATION OF PLASTID atpB AND rbcL GENE SEQUENCES FOR INFERRING PHYLOGENETIC RELATIONSHIPS WITHIN ORCHIDACEAE KENNETH M. CAMERON The Lewis B. and Dorothy Cullman Program for Molecular Systematics Studies, The New York Botanical Garden, Bronx, New York 10458-5126, USA ([email protected]) ABSTRACT Parsimony analyses of DNA sequences from the plastid genes atpB and rbcL were completed for 173 species of Orchidaceae (representing 150 different genera) and nine genera from outgroup families in Asparagales. The atpB tree topology is similar to the rbcL tree, although the atpB data contain less homoplasy and provide greater jackknife support than rbcL alone. In combination, the two-gene tree recovers five monophyletic clades corresponding to subfamilies within Orchidaceae, and fully resolves them with moderate to high jackknife support as follows: Epidendroideae are sister to Orchidoideae, followed by Cypripedioideae, then Vanilloideae, and with Apostasioideae sister to the entire family. -
Cf. Eria Dacrydium. Syn. E. Biflora. Dactyl-: Used in Combwds., Ref. Daktylos: Digit
dacrydium: ref. dakrydion: a little tear (: tear-drop). cf. Eria dacrydium. syn. E. biflora. dactyl-: used in combwds., ref. daktylos: digit. Mostly taken as: finger, but can also be: toe. For any organ or part alluded to resemble a finger; having, or like a finger. dactyla: digit; finger. cf. Lepanthes dactyla. x Dactyleucorchis: Soó 1966. Noted the name was taken from Dactylorhiza and Leucorchis, as it seemed to have qualities of both. syn. x Pseudorhiza P.F.Hunt. dactylifera: finger + bearing. cf. Eulophia dactylifera. dactyliferum: finger + see -fer: bearing. Alluding to the labellum callus. cf. Oncidium dactyliferum. dactylina: digit; finger + like. cf. Lepanthes dactylina. dactylinum: digit; finger + like. cf. Cryptocentrum peruvianum ssp.dactylinum. Dactylis: see dactyl-: digit; finger, or toe. eg. Dactylis glomerata. x Dactylitella: P.F.Hunt & Summerh.1965. Noted the name was taken from the parents, reported to be a cross of Nigritella x Dactylorhiza. syn. x Dactylodenia. x Dactylocamptis: P.F.Hunt & Summerh.1965. Noted the name is taken from the parents, the result of Anacamptis x Dactylorhiza. ex Switzerland, cf. x Dactylocamptis weberi (M.Schulze) Soó 1966. Noted as monotypic. dactyloceras: finger + horn. cf. Podangis dactyloceras. Dactyloceras: Garay & H.R.Sweet 1968: finger + horn. syn. x Orchidactylorhiza. dactyloclinium: finger + small bed. cf. Epidendrum dactyloclinium. x Dactylodenia: Garay & H.R.Sweet 1966. Noted the name is taken from the parents as it’s a cross of Dactylorhiza x Gymnadenia. eg. x Dactylodenia varia. Listed as ex westn. Europe and Great Britain. dactylodes: digit; finger + resembling. cf. Dendrobium dactylodes. Dactyloglossum: P.F.Hunt & Summerh.1965. Noted the name is taken from the parents as it was thought to be a cross of Coeloglossum x Dactylorhiza. -
00012-2009 ( .Pdf )
This issue of Lankesteriana is dedicated to the memory of the great Mexican botanist and orchidologist, MIGUEL ÁNGEL SOTO ARENAS (1963—2009), tragically murdered in Mexico on August 27th, 2009 ISSN 1409-3871 VOL. 9, No. 3 JANUARY 2010 Miguel Ángel Soto Arenas (1963-2009) EDUARDO A. PÉREZ GARCÍA & ERIC HÁGSATER 269 In memoriam: Miguel Ángel Soto Arenas (1963-2009) ERIC HÁGSATER 273 Miguel Ángel Soto Arenas: publications and main conferences (1983-2009) 276 A new species of Vanilla from South America MIGUEL A. SOTO ARENAS† 281 A revision of the mexican and Central American species of Vanilla Plum. ex Mill. with a characterization of their ITS region of the nuclear ribosomal DNA MIGUEL A. SOTO ARENAS† & ROBERT L. DRESSLER 285 A new infrageneric classification and synopsis of the genus Vanilla Plum. ex Mill. (Orchidaceae, Vanillinae) MIGUEL A. SOTO ARENAS† & PHILLIP CRIBB 355 Comparettia sotoana (Orchidaceae: Oncidiinae), a new Ecuadorian species FRANCO PUPULIN & GILBERTO MERINO 399 Confusion in Epidendrum brenesii Schltr., and a new Costa Rican species: Epidendrum sotoanum (Orchidaceae: Laeliinae) ADAM P. KARREMANS & ERIC HÁGSATER 403 Oncidium ornithorhynchum, una especie mal interpretada y un nombre para una vieja especie: Oncidium sotoanum (Orchidaceae) ROLANDO JIMÉNEZ MACHORRO & ERIC HÁGSATER 411 Two new species of Lepanthes from Costa Rica close to L. schizocardia (Orchidaceae: Pleurothallidinae) FRANCO PUPULIN, DIEGO BOGARÍN & CHRISTINA M. SMITH 423 Stanhopeinae Mesoamericanae, V. Las Stanhopea de México GÜNTER GERLACH 431 continues -
Cunninghamia Date of Publication: 23 March 2015 a Journal of Plant Ecology for Eastern Australia
Cunninghamia Date of Publication: 23 March 2015 A journal of plant ecology for eastern Australia ISSN 0727- 9620 (print) • ISSN 2200 - 405X (Online) I saw a good deal of the country much more than any other collector An assessment of the botanical collections of Eugene Fitzalan (1830–1911) John Leslie Dowe Australian Tropical Herbarium, James Cook University, Cairns, Queensland,4870, AUSTRALIA [email protected] Abstract: I saw a good deal of the country much more than any other collector1. Eugene [Fitzherbert Albini] Fitzalan (1830–1911) came to Australia from Ireland about 1849. His first significant appointment as a botanical collector was on the Queensland Government’s expedition to investigate the estuary of the Burdekin River in 1860, commanded by Joseph W. Smith RN on the Schooner Spitfire. Fitzalan was engaged as a plant collector by Ferdinand Mueller, the Government Botanist for the Colony of Victoria. Following the Burdekin Expedition of 1860, Fitzalan became a pioneer settler in 1861, at the newly proclaimed township of Bowen (Port Denison) from where he undertook collecting excursions to Mount Dryander, Mount Elliot, Townsville, Cairns, Daintree River and Cooktown, whilst establishing and managing a seed and plant nursery business. He was a contemporary and/or collecting companion of F.M.Bailey, Charles Weldon Birch, Edward Bowman, John Dallachy, Amalie Dietrich, Stephen Johnson, Walter Hill, Frederick Kilner, L.G. Nugent and Walter Froggatt. Fitzalan moved to Cairns in 1886, and became active in the initial development of the Cairns Municipal Botanical Reserve, the site of the future heritage-listed Cairns Botanic Gardens. Fitzalan’s collections number to about 2200 herbarium specimens. -
Complete Papers from the V SCIENTIFIC CONFERENCE ON
INVITED PAPERS FROM THE V SCIENTIFIC CONFERENCE ON ANDEAN ORCHIDS Cali, Colombia, Pontificia Universidad Javeriana 19–21 November 2015 ∑ EDITED BY NICOLA S. FLANAGAN ALEC M. PRIDGEON Pontificia Universidad Javeriana, Cali, Colombia Royal Botanic Gardens, Kew, U.K. and FRANCO PUPULIN Universidad de Costa Rica, Jardín Botánico Lankester LANKESTERIANA LANKESTERIANA 16(2): 189–200. 2016. doi: http://dx.doi.org/10.15517/lank.v16i2.26005 EvolutiONARy diVERsifiCAtiON ANd histORiCAL BiOGEOGRAphy Of thE ORChidACEAE iN CENtRAL AMERiCA WITH EMPHASIS ON Costa RICA AND PANAMA DIEGO BOGARÍN1,2,3,7, FRANCO PUPULIN1, ERIK SMETS3,4,5 & BARBARA GRAVENDEEL3,4,6 1 Lankester Botanical Garden, University of Costa Rica, Cartago, Costa Rica 2 Herbarium UCH, Autonomous University of Chiriquí, Chiriquí, Panama 3 Naturalis Biodiversity Center, Leiden University, Leiden, The Netherlands 4 Institute Biology Leiden, Leiden University, Leiden, The Netherlands 5 KU Leuven, Ecology, Evolution and Biodiversity Conservation, Leuven, Belgium 6 University of Applied Sciences Leiden, Leiden, The Netherlands 7 Author for correspondence: [email protected] ABSTRACT. Historically, the isthmus of Costa Rica and Panama has been a source of fascination for its strategic position linking North America to South America. In terms of biodiversity, the isthmus is considered one of the richest regions in the world. Orchidaceae is the most diverse plant family in the area, and the number of species is triple that of other well-represented angiosperm families such as Rubiaceae, Fabaceae and Poaceae. Though we are still far from knowing the exact number of orchid species occurring extant in both countries nowadays, at present the orchid flora reported for Costa Rica (1574 spp.) and Panama (1372 spp.) summarise together about 2010 species; which represents 6.5-8.0% of all orchid species on just about 1% of the Earth’s land surface.