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The Complete Devewpment of the Deep-Sea Cidaroid Urchin
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by University of Oregon Scholars' Bank THE COMPLETE DEVEWPMENT OF THE DEEP-SEA CIDAROID URCHIN CIDARIS BLAKEI (AGASSIZ, 1878) WITH AN EMPHASIS ON THE HYALINE LAYER by KATHLEEN BENNETT A THESIS Presented to the Department ofBiology and the Graduate School ofthe University ofOregon in partial fulfillment ofthe requirements for the degree of Master ofScience December 2009 11 "The Complete Development ofthe Deep-Sea Cidaroid Urchin Cidaris blakei (Agassiz, 1878) With an Emphasis on the Hyaline Layer," a thesis prepared by Kathleen Bennett in partial fulfillment ofthe requirements for the Master ofScience degree in the Department ofBiology. This thesis has been approved and accepted by: Al 'Sb1ilAld;, C air ofthe Examining Committee Date Committee in Charge: Alan Shanks, Chair Richard Emlet Craig Young Accepted by: Dean ofthe Graduate School III © 2009 Kathleen Bennett IV An Abstract ofthe Thesis of Kathleen Bennett for the degree of Master ofScience in the Department ofBiology to be taken December 2009 Title: THE COMPLETE DEVELOPMENT OF THE DEEP-SEA CIDAROID URCHIN CIDARIS BLAKEI(AGASSIZ, 1878) WITH AN EMPHASIS ON THE HYALINE LAYER Approved: Alan Shanks Living echinoids comprise two major sister clades, the Euechinoidea and the Cidaroidea. Cidaroids first appeared during the lower Permian (~255 mya) and are considered to represent the primitive form ofall other living echinoids. The present study ofCidaris blakei, a deep-sea planktotrophic cidaroid urchin, provides a description ofdevelopment from fertilization through early juvenile stages and is the first report ofa deep-sea organism reared through metamorphosis. -
A Phylogenomic Resolution of the Sea Urchin Tree of Life
bioRxiv preprint doi: https://doi.org/10.1101/430595; this version posted September 29, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. A phylogenomic resolution of the sea urchin tree of life Nicolás Mongiardino Koch ([email protected]) – Corresponding author Department of Geology and Geophysics, Yale University, New Haven CT, USA Simon E. Coppard ([email protected]) Department of Biology, Hamilton College, Clinton NY, USA. Smithsonian Tropical Research Institute, Balboa, Panama. Harilaos A. Lessios ([email protected]) Smithsonian Tropical Research Institute, Balboa, Panama. Derek E. G. Briggs ([email protected]) Department of Geology and Geophysics, Yale University, New Haven CT, USA. Peabody Museum of Natural History, Yale University, New Haven CT, USA. Rich Mooi ([email protected]) Department of Invertebrate Zoology and Geology, California Academy of Sciences, San Francisco CA, USA. Greg W. Rouse ([email protected]) Scripps Institution of Oceanography, UC San Diego, La Jolla CA, USA. bioRxiv preprint doi: https://doi.org/10.1101/430595; this version posted September 29, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Abstract Background: Echinoidea is a clade of marine animals including sea urchins, heart urchins, sand dollars and sea biscuits. -
Phylogenomic Analyses of Echinoid Diversification Prompt a Re
bioRxiv preprint doi: https://doi.org/10.1101/2021.07.19.453013; this version posted July 24, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Phylogenomic analyses of echinoid diversification prompt a re- 2 evaluation of their fossil record 3 Short title: Phylogeny and diversification of sea urchins 4 5 Nicolás Mongiardino Koch1,2*, Jeffrey R Thompson3,4, Avery S Hatch2, Marina F McCowin2, A 6 Frances Armstrong5, Simon E Coppard6, Felipe Aguilera7, Omri Bronstein8,9, Andreas Kroh10, Rich 7 Mooi5, Greg W Rouse2 8 9 1 Department of Earth & Planetary Sciences, Yale University, New Haven CT, USA. 2 Scripps Institution of 10 Oceanography, University of California San Diego, La Jolla CA, USA. 3 Department of Earth Sciences, 11 Natural History Museum, Cromwell Road, SW7 5BD London, UK. 4 University College London Center for 12 Life’s Origins and Evolution, London, UK. 5 Department of Invertebrate Zoology and Geology, California 13 Academy of Sciences, San Francisco CA, USA. 6 Bader International Study Centre, Queen's University, 14 Herstmonceux Castle, East Sussex, UK. 7 Departamento de Bioquímica y Biología Molecular, Facultad de 15 Ciencias Biológicas, Universidad de Concepción, Concepción, Chile. 8 School of Zoology, Faculty of Life 16 Sciences, Tel Aviv University, Tel Aviv, Israel. 9 Steinhardt Museum of Natural History, Tel-Aviv, Israel. 10 17 Department of Geology and Palaeontology, Natural History Museum Vienna, Vienna, Austria 18 * Corresponding author. -
The Echinoderm Newsletter
THE ECHINODERM NEWSLETTER Number 16. 1991. Editor: John Lawrence Department of 8iology University of South Florida Tampa, Florida 33620, U.S.A. Distributed by the Department of Invertebrate Zoology National Museum of Natural History Smithsonian Institution Washington, D.C. 20560, U.S.A. (David Pawson) The newsletter contains information concerning meetings and conferences, publications of interest to echinoderm biologists, titles of theses on echinoderms, and research interests and addresses of echinoderm biologists. Individuals who desire to receive the newsletter should send their name and research interests to the editor. The newsletter is not intended to be a part of the scientific literature and should not be ctted, abstracted, or reprinted as a published document. 1 .. j Table of Contents Echinoderm specialists: names and address 1 Conferences 1991 European Colloquium on Echinoderms 26 1994 International Echinoderm Conference 27 Books in print .........•.........................••.................. 29 Recent articles ........•............................................. 39 Papers presented at conferences 70 Theses and dis sertat ions 98 Requests and informat ion . Inst itut iona 1 1 ibrarfes' requests 111 Newsletters: Beche-de-mer Information Bulleltin 111 COTS Comm. (Crown-of-thorns starfish) 114 Individual requests and information 114 Cadis-fly oviposition in asteroids 116 Pept ides in ech inoderms ;- 117 Mass mortality of asteroids in the north Pacific 118 Species of echinoderms available at marine stations . Japan 120 Banyuls, -
Revision of the Genus Zebrida White, 1847 (Crustacea: Decapoda: Brachyura: Eumedoni Dae)
BULLETIN OF MARINE SCIENCE, 65(2): 481-495, 1999 REVISION OF THE GENUS ZEBRIDA WHITE, 1847 (CRUSTACEA: DECAPODA: BRACHYURA: EUMEDONI DAE) Peter K. L. Ng and Diana G. B. Chia ABSTRACT The eumedonid genus Zebrida White, 1847, members of which are obligate symbionts of sea urchins, is revised. Three species are now recognized: Z. adamsii White, 1847 (type species), Z. longispina Haswell, 1880 and Z. brevicarinata new species. Members of five genera of eumedonid crabs (Echinoecus, Eumedonus, Gonatonotus, Zebridonus and Zebrida) are known obligate symbionts on sea urchins. Of these, Zebrida White, 1847, has the most unusual appearance, with its long spines and distinctive col- oration. The general consensus is that the genus is monotypic, being represented by only one species, Z. adamsii White, 1847, which has a wide Indo-West Pacific distribution (Suzuki and Takeda, 1974). The present study shows that three species of Zebrida can in fact be recognized: Z. adamsii; Z. longispina Haswell, 1880 and Z. brevicarinata new species. METHODS AND MATERIALS Measurements provided are of the carapace length and width. The length of the carapace (cl) was measured from the tip of the rostrum to the posterior margin of the carapace. The carapace width (cb) was taken across the widest part. The inner supraorbital tooth is used in lieu of the lateral rostral lobule of some workers. The abbreviations G1 and G2 are used for the male first and second pleopods, respectively. Specimens examined are deposited in the following institutions: Australian Museum, Sydney (AM); Museum National d'Histoire Naturelle, Paris (MNHN); Natural History Museum [ex Brit- ish Museum (Natural History)], London (BMNH); National Museum of Victoria, Abbotsford, Aus- tralia (NMV); Northern Territory Museum of Arts and Sciences, Darwin (NTM); Queensland Mu- seum, Brisbane (QM); Institut Royale des Sciences Naturelles de Belgique, Brussels (IRSNB); Nationaal Natuurhistorisches Museum (formerly Rijksmuseum van Natuurlijke Histoire), Leiden (RMNH); Forschungs-Institut Senckenberg, Frankfurt-am-Main (SMF); U.S. -
A Phylogenomic Resolution of the Sea Urchin Tree of Life Nicolás Mongiardino Koch1* , Simon E
Mongiardino Koch et al. BMC Evolutionary Biology (2018) 18:189 https://doi.org/10.1186/s12862-018-1300-4 RESEARCH ARTICLE Open Access A phylogenomic resolution of the sea urchin tree of life Nicolás Mongiardino Koch1* , Simon E. Coppard2,3, Harilaos A. Lessios3, Derek E. G. Briggs1,4, Rich Mooi5 and Greg W. Rouse6 Abstract Background: Echinoidea is a clade of marine animals including sea urchins, heart urchins, sand dollars and sea biscuits. Found in benthic habitats across all latitudes, echinoids are key components of marine communities such as coral reefs and kelp forests. A little over 1000 species inhabit the oceans today, a diversity that traces its roots back at least to the Permian. Although much effort has been devoted to elucidating the echinoid tree of life using a variety of morphological data, molecular attempts have relied on only a handful of genes. Both of these approaches have had limited success at resolving the deepest nodes of the tree, and their disagreement over the positions of a number of clades remains unresolved. Results: We performed de novo sequencing and assembly of 17 transcriptomes to complement available genomic resources of sea urchins and produce the first phylogenomic analysis of the clade. Multiple methods of probabilistic inference recovered identical topologies, with virtually all nodes showing maximum support. In contrast, the coalescent-based method ASTRAL-II resolved one node differently, a result apparently driven by gene tree error induced by evolutionary rate heterogeneity. Regardless of the method employed, our phylogenetic structure deviates from the currently accepted classification of echinoids, with neither Acroechinoidea (all euechinoids except echinothurioids), nor Clypeasteroida (sand dollars and sea biscuits) being monophyletic as currently defined. -
Echinoderm (Echinodermata) Diversity in the Pacific Coast of Central America
Mar Biodiv DOI 10.1007/s12526-009-0032-5 ORIGINAL PAPER Echinoderm (Echinodermata) diversity in the Pacific coast of Central America Juan José Alvarado & Francisco A. Solís-Marín & Cynthia G. Ahearn Received: 20 May 2009 /Revised: 17 August 2009 /Accepted: 10 November 2009 # Senckenberg, Gesellschaft für Naturforschung and Springer 2009 Abstract We present a systematic list of the echinoderms heterogeneity, Costa Rica and Panama are the richest places, of Central America Pacific coast and offshore island, based with Panama also being the place where more research has on specimens of the National Museum of Natural History, been done. The current composition of echinoderms is the Smithsonian Institution, Washington D.C., the Invertebrate result of the sampling effort made in each country, recent Zoology and Geology collections of the California Academy political history and the coastal heterogeneity. of Sciences, San Francisco, the Museo de Zoología, Universidad de Costa Rica, San José and published accounts. Keywords Eastern Tropical Pacific . Similarity. Richness . A total of 287 echinoderm species are recorded, distributed Taxonomic distinctness . Taxonomic list in 162 genera, 73 families and 28 orders. Ophiuroidea (85) and Holothuroidea (68) are the most diverse classes, while Panama (253 species) and Costa Rica (107 species) have the Introduction highest species richness. Honduras and Guatemala show the highest species similarity, also being less rich. Guatemala, The Pacific coast of Central America is located on the Honduras, El Salvador y Nicaragua are represented by the Panamic biogeographic province on the Eastern Tropical most common nearshore species. Due to their coastal Pacific (ETP), from the gulf of Tehuantepec, México, to the gulf of Guayaquil(16°N to 3°S), Ecuador (Briggs 1974). -
A Total-Evidence Dated Phylogeny of Echinoids and the Evolution of Body
bioRxiv preprint doi: https://doi.org/10.1101/2020.02.13.947796; this version posted February 13, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 A Total-Evidence Dated Phylogeny of Echinoids and the Evolution of Body 2 Size across Adaptive Landscape 3 4 Nicolás Mongiardino Koch1* & Jeffrey R. Thompson2 5 1 Department of Geology & Geophysics, Yale University. 210 Whitney Ave., New Haven, CT 6 06511, USA 7 2 Research Department of Genetics, Evolution and Environment, University College London, 8 Darwin Building, Gower Street, London WC1E 6BT, UK 9 * Corresponding author. Email: [email protected]. Tel.: +1 (203) 432-3114. 10 Fax: +1 (203) 432-3134. 11 bioRxiv preprint doi: https://doi.org/10.1101/2020.02.13.947796; this version posted February 13, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. MONGIARDINO KOCH & THOMPSON 12 Abstract 13 Several unique properties of echinoids (sea urchins) make them useful for exploring 14 macroevolutionary dynamics, including their remarkable fossil record that can be incorporated 15 into explicit phylogenetic hypotheses. However, this potential cannot be exploited without a 16 robust resolution of the echinoid tree of life. We revisit the phylogeny of crown group 17 Echinoidea using both the largest phylogenomic dataset compiled for the clade, as well as a 18 large-scale morphological matrix with a dense fossil sampling. -
Classification of Echinoderms
CLASSIFICATION OF ECHINODERMS The members of the phylum Echinodermata are known to mankind since ancient times. Echinoderms were first given the status of a distinct group by Bruguiere in 1791. Echinoderms are bilaterally symmetrical (in larval stage) or pentamerous radially symmetrical (in adults) having mesodermal calcareous ossicles as exoskeleton, enterocoelom, water-vascular system and without distinct head. But H. B. Fell (1948, 1965), the authority on echinoderm taxonomy of Harvard University, USA, rejected the older classification as it was an artificial one because it was on the basis of mode of existence. The scheme of classification presented in this book (4th ed.), largely based on the classification plan outlined by Edward E. Ruppert and Robert D. Barnes (1994, 6th ed.). Classification with Characters: A. Subphylum Homalozoa (Mid- Cambrian —Devonian): Features: 1. Extinct, irregular, palaeozoic. 2. Carpoids (resembling crinoids but laterally compressed giving the evidence of a bilateral symmetry). Example: Enoploura. B. Subphylum Crinozoa: Features: 1. Radially symmetrical echinoderms with a globoid or cup-shaped theca and brachioles or arms. 2. Mostly attached, with oral surface directed upward. This subphylum includes the fossil eocrinoids, cystoids and the fossil and living crinoids. 1. Class Eocrinoidea (Early Cambrian to Ordovician): Features: 1. The oldest extinct crinoids. 2. They were stalked or stalk-less, with an enclosed theca. 3. The upper or oral end contained five ambulacra and five to many brachioles. Example: Mimocystites. 2. Class Cystidea (Ordovician—Silurian): Features: 1. The well-known group of extinct echinoderms. 2. They have vase-like bodies which remain fixed with the substratum directly or through a stalk. -
<I>Periclimenes Colemani</I>
AUSTRALIAN MUSEUM SCIENTIFIC PUBLICATIONS Bruce, A. J., 1975. Periclimenes colemani sp. nov., a new shrimp associate of a rare sea urchin from Heron Island, Queensland (Decapoda Natantia, Pontoniinae). Records of the Australian Museum 29(18): 486–501. [6 June 1975]. doi:10.3853/j.0067-1975.29.1975.213 ISSN 0067-1975 Published by the Australian Museum, Sydney naturenature cultureculture discover discover AustralianAustralian Museum Museum science science is is freely freely accessible accessible online online at at www.australianmuseum.net.au/publications/www.australianmuseum.net.au/publications/ 66 CollegeCollege Street,Street, SydneySydney NSWNSW 2010,2010, AustraliaAustralia 486 ;; 0 I'i ci, \ </) 'i::i \ E'" .~ Cl \ '" ::::'"~ ~ ~ ~ ,S ~ I~ 487 Periclimenes colemani sp. nov., a new shrimp associate of a rare sea urchin froIn Heron Island, Queensland (Decapoda Natantia, Pontoniinae) A. J. BRUCE East African Marine Fisheries Research Organization P.O. Box 81651, Mombasa. Kenya Figures 1-8. Manuscript received 1st January, 1914. Manuscript revised 16th June, 1914. SUMMARY Periclimenes colemani, a new species of pontoniinid shrimp, is described and illustrated. This species was found at Heron Island on the Australian Great Barrier Reef. It lives in pairs on the test of the sea urchin Asthenosoma intermedium H. L. Clark. The new species is considered to occupy a rather isolated systematic position, most closely related to another echinoid associate, P. hirsutus Bruce. It is also remarkable for its cryptic white, red spotted colour pattern. The associations between Indo-West Pacific Periclimenes spp. and echinoids are briefly reviewed. INTRODUCTION The association of echinoderms with many species of the large pon toniinid genus Periclimenes Costa, has been well established for many years but relatively few species have been found to occur in associations with echinoids. -
Spineless: Status and Trends of the World's Invertebrates
The Zoological Society of London (ZSL) The Zoological Society of London (ZSL) is a charity founded in 1826, is a world renowned centre of excellence for conservation science and applied conservation. ZSL’s mission is to promote and achieve the worldwide conservation of animals Spineless and their habitats. This is realised by carrying out field conservation and research in over 50 countries across the globe and through education and awareness at our two zoos, ZSL London Zoo Status and trends of the and ZSL Whipsnade Zoo, inspiring people to take conservation action. world’s invertebrates We strive to achieve our mission by: Conducting world-leading conservation science Implementing effective field conservation projects globally Edited by Ben Collen, Monika Böhm, Rachael Kemp and Jonathan E. M. Baillie Providing decision-makers with the best conservation advice Building conservation capacity and inspiring people to connect with the natural world Spineless www.zsl.org invertebrates of the world’s Status and trends Cover photo: The praying mantis (Mantodea) is found across southern Europe is one of the most well known species of Mantids. Like all species in the group, Mantis religiosa are formidable predators, able to turn their heads 180 degrees. With two large compound eyes and three other simple eyes located between them, their deceptive camouflage aids them in ambushing and stalking prey. Spineless Status and trends of the world’s invertebrates Edited by Ben Collen, Monika Böhm, Rachael Kemp and Jonathan E. M. Baillie Disclaimer The designation of the geographic entities in this report, and the presentation of the material, do not imply the expressions of any opinion on the part of ZSL, IUCN or Wildscreen concerning the legal status of any country, territory, area, or its authorities, or concerning the delimitation of its frontiers or boundaries. -
Paleogenomics of Echinoids Reveals an Ancient Origin for the Double
PAPER Paleogenomics of echinoids reveals an ancient origin COLLOQUIUM for the double-negative specification of micromeres in sea urchins Jeffrey R. Thompsona,1, Eric M. Erkenbrackb, Veronica F. Hinmanc, Brenna S. McCauleyc,d, Elizabeth Petsiosa, and David J. Bottjera aDepartment of Earth Sciences, University of Southern California, Los Angeles, CA 90089; bDepartment of Ecology and Evolutionary Biology, Yale University, New Haven, CT 06511; cDepartment of Biological Sciences, Carnegie Mellon University, Pittsburgh, PA 15213; and dHuffington Center on Aging, Baylor College of Medicine, Houston, TX 77030 Edited by Douglas H. Erwin, Smithsonian National Museum of Natural History, Washington, DC, and accepted by Editorial Board Member Neil H. Shubin January 31, 2017 (received for review August 2, 2016) Establishing a timeline for the evolution of novelties is a common, methods thus provide a rigorous methodology in which to examine unifying goal at the intersection of evolutionary and developmental gene expression datasets, and ultimately animal body plan evolu- biology. Analyses of gene regulatory networks (GRNs) provide the tion (11), within the context of evolutionary time. After genomic ability to understand the underlying genetic and developmental novelties underlying differential body plan development have been mechanisms responsible for the origin of morphological structures identified, we can then consider the rates at which these novelties both in the development of an individual and across entire evolution- arise, and the rates at