Identification of ANKRD11 As a P53 Coactivator

Total Page:16

File Type:pdf, Size:1020Kb

Identification of ANKRD11 As a P53 Coactivator Research Article 3541 Identification of ANKRD11 as a p53 coactivator Paul M. Neilsen1,*, Kelly M. Cheney1, Chia-Wei Li2, J. Don Chen2, Jacqueline E. Cawrse1, Renée B. Schulz1, Jason A. Powell3, Raman Kumar1 and David F. Callen1 1Breast Cancer Genetics Group, Dame Roma Mitchell Cancer Research Laboratories, Discipline of Medicine, University of Adelaide and Hanson Institute, IMVS, Adelaide, SA 5000, Australia 2Department of Pharmacology, University of Medicine and Dentistry of New Jersey-Robert Wood Johnson Medical School, Piscataway, NJ 08854-5635, USA 3Cytokine Receptor Laboratory, Department of Human Immunology, Hanson Institute, IMVS, Adelaide, SA 5000, Australia *Author for correspondence (e-mail: [email protected]) Accepted 29 July 2008 Journal of Cell Science 121, 3541-3552 Published by The Company of Biologists 2008 doi:10.1242/jcs.026351 Summary The ability of p53 to act as a transcription factor is critical for ANKRD11 enhanced the DNA-binding properties of mutant its function as a tumor suppressor. Ankyrin repeat domain 11, p53R273H to the CDKN1A promoter, suggesting that ANKRD11 ANKRD11 (also known as ANR11 or ANCO1), was found to can mediate the restoration of normal p53 function in some be a novel p53-interacting protein that enhanced the cancer-related p53 mutations. In addition, ANKRD11 itself was transcriptional activity of p53. ANKRD11 expression was shown found to be a novel p53 target gene. These findings demonstrate to be downregulated in breast cancer cell lines. Restoration of a role for ANKRD11 as a p53 coactivator and suggest the ANKRD11 expression in MCF-7 (wild-type p53) and MDA-MB- involvement of ANKRD11 in a regulatory feedback loop with 468 (p53R273H mutant) cells suppressed their proliferative and p53. clonogenic properties through enhancement of CDKN1A (p21waf1/CIP1) expression. ShRNA-mediated silencing of ANKRD11 expression reduced the ability of p53 to activate Supplementary material available online at CDKN1A expression. ANKRD11 was shown to associate with http://jcs.biologists.org/cgi/content/full/121/21/3541/DC1 the p53 acetyltransferases and cofactors, P/CAF and hADA3. Exogenous ANKRD11 expression enhanced the levels of Key words: Acetylation, Ankyrin repeat domain protein, Breast acetylated p53 in both MCF-7 and MDA-MB-468 cells. cancer, p53, p53 mutant rescue Introduction proven to be a challenging task because of the complex Journal of Cell Science The p53 protein is the most important tumor suppressor in the cell biomechanistics that occur during the restoration of mutant p53 and is described as ‘the guardian of the genome’ (Lane, 1992). The function. function of p53 is predominantly dependent on its activity as a The p53 transcription factor is stabilized and activated in response sequence-specific transcription factor, controlling the expression of to various forms of intracellular or extracellular stress. Stabilization various target genes that mediate biological functions such as cell- and activation of p53 occurs through a complex pattern of post- cycle arrest, apoptosis, senescence, differentiation, DNA repair and translational modifications, including phosphorylation and inhibition of angiogenesis and metastasis (Liu and Chen, 2006). acetylation. The acetylation of specific lysine residues of p53 is Approximately 50% of all cancers contain a mutation in the TP53 mediated by several acetyltransferases, including p300/CBP gene (Vogelstein et al., 2000). The six most frequently occurring (Lys164, Lys370, Lys372, Lys373, Lys381, Lys382 and Lys386), tumorigenic mutations of p53 cluster within the DNA-binding Tip60/hMOF (Lys120) and P/CAF (Lys320) (Gu and Roeder, 1997; surface, involving residues that either directly contact DNA (‘DNA- Sakaguchi et al., 1998; Sykes et al., 2006; Tang et al., 2008). Earlier contact’ mutations – residues R248 and R273) or perturb the studies have shown that acetylation of p53 promotes its ability to structural integrity of the DNA-binding surface of p53 (‘structural’ bind its cognate DNA-response element in vitro (Gu and Roeder, mutations – residues R175, G245, R249 and R282) (Bullock and 1997; Sakaguchi et al., 1998); however, these findings are not Fersht, 2001). DNA-contact mutants generally retain a similar consistent with recent in vivo data (Liu and Chen, 2006; Tang et structural integrity and thermodynamic stability to that displayed al., 2008; Toledo and Wahl, 2006). It has since been shown that the by wild-type p53; however, the mutation might significantly impair critical function of acetylation in vivo is not to enhance the DNA- or even completely abrogate its ability to interact with its cognate binding affinity of p53, but rather to enhance its interaction with DNA-response element (Bullock et al., 2000). Rescue of DNA- coactivators or histone acetyltransferases (HATs) (Barlev et al., contact mutants has been demonstrated through restoration of their 2001), or perturb its interaction with Mdm2 (Tang et al., 2008) at DNA-binding affinities following treatment with a p53-derived C- the promoters of p53-responsive genes. Recent evidence also terminal peptide (Selivanova et al., 1997), small p53-activating suggests that acetylation of specific lysine residues in p53 may molecules (CP-257042, CP-31398 and PRIMA-1) (Bykov et al., influence the selection of specific p53 target genes, resulting in 2002; Foster et al., 1999) or the introduction of second site induction of either growth arrest or apoptotic pathways (Di Stefano suppressor mutations (Brachmann et al., 1998). Despite these recent et al., 2005). hADA3 (alteration/deficiency in activation) has been advances, the development of successful pharmacological identified as a novel p53-interacting protein capable of recruiting therapeutics designed to rescue p53 DNA-contact mutants has p300/CBP and P/CAF to p53 (Wang et al., 2001). Ectopic expression 3542 Journal of Cell Science 121 (21) of hADA3 increased the stability and transcriptional activity of p53, ANKRD11-myc and GFP-p14ARF were ectopically expressed in and was shown to have an essential role in p53 acetylation (Wang HEK293T cells and imaged using confocal microscopy (Fig. 1C). et al., 2001). Nevertheless, we currently do not have a Coimmunolocalization results showed that ANKRD11-myc comprehensive understanding of the complex molecular localized exclusively to extranucleolar p14ARF foci (filled mechanisms involved in the regulation of p53 acetylation. arrowheads), but not to the larger nucleolar p14ARF foci (open ANKRD11 was initially selected as a candidate breast cancer arrowheads). Endogenous PML counterstaining showed that PML tumor suppressor gene because of its location within the 16q24.3 bodies were also recruited to ANKRD11/p14ARF-positive breast cancer LOH (loss of heterozygosity) region (Powell et al., extranucleolar inclusions (Fig. 1D) as previously reported (Kashuba 2002). LOH of human chromosome 16q occurs in at least half of et al., 2003). In the absence of exogenous p14ARF, ANKRD11 all breast tumors (Miller et al., 2003) and cytogenetic studies have nuclear foci were observed to exhibit only partial colocalization implicated this to be an early event in breast carcinogenesis (Gong with PML bodies during late G2 phase of the cell cycle (data not et al., 2001). ANKRD11 (also termed ANCO1; official protein shown). This observation suggests that the association of symbol ANR11) was also reported to interact with and suppress ANKRD11-PML complex is enhanced in the presence of p14ARF. the function of the p160 coactivator family, including the oncogene The location of nucleoli in these cells was determined through AIB1 (amplified in breast cancer-1) (Zhang et al., 2004). AIB1 detection of nucleophosmin, and nuclei were counterstained with enhances ligand-dependent transactivation of steroid nuclear DAPI. Further studies were undertaken using glycerol gradient receptors, including estrogen receptor (ER), and is frequently centrifugation of lysates of MCF-7 cells stably expressing GFP- amplified and overexpressed in breast and ovarian cancers (Anzick ANKRD11-myc. Both p53 and PML cofractionated with et al., 1997). ANKRD11 was reported to recruit histone deacetylases ANKRD11-myc (supplementary material Fig. S2), providing (HDACs) through its C-terminus to the AIB1/nuclear receptor preliminary evidence that these proteins may coexist as a complex. complex, resulting in the inhibition of ligand-dependent Detection of p14ARF in these fractions was not possible because the transactivation (Zhang et al., 2004). Based on these findings, we MCF-7 cell line does not express endogenous p14ARF as a result investigated whether ANKRD11 has properties similar to that of a of deletion of the CDKN2A locus (Stott et al., 1998). breast cancer tumor suppressor. In this study we report the functional characterization of ANKRD11 interacts with p53 in vivo and in vitro through the ANKRD11 as a novel p53-interacting protein. We find that ankyrin repeat domain ANKRD11 increases the acetylation of p53, potentiating the DNA- Coimmunoprecipitation experiments were used to determine binding property and transcriptional activity of p53. Findings from whether ANKRD11 interacts with p53 in vivo. Endogenous p53 this study suggest that ANKRD11 might have a crucial role in p53- was detected in protein complexes immunoprecipitated using an mediated tumor suppression and might also be implicated in the anti-ANKRD11 antibody from protein lysates of MCF-7 cells restoration of mutant p53R273H function. We also show that transduced with recombinant
Recommended publications
  • Supplemental Table S1
    Entrez Gene Symbol Gene Name Affymetrix EST Glomchip SAGE Stanford Literature HPA confirmed Gene ID Profiling profiling Profiling Profiling array profiling confirmed 1 2 A2M alpha-2-macroglobulin 0 0 0 1 0 2 10347 ABCA7 ATP-binding cassette, sub-family A (ABC1), member 7 1 0 0 0 0 3 10350 ABCA9 ATP-binding cassette, sub-family A (ABC1), member 9 1 0 0 0 0 4 10057 ABCC5 ATP-binding cassette, sub-family C (CFTR/MRP), member 5 1 0 0 0 0 5 10060 ABCC9 ATP-binding cassette, sub-family C (CFTR/MRP), member 9 1 0 0 0 0 6 79575 ABHD8 abhydrolase domain containing 8 1 0 0 0 0 7 51225 ABI3 ABI gene family, member 3 1 0 1 0 0 8 29 ABR active BCR-related gene 1 0 0 0 0 9 25841 ABTB2 ankyrin repeat and BTB (POZ) domain containing 2 1 0 1 0 0 10 30 ACAA1 acetyl-Coenzyme A acyltransferase 1 (peroxisomal 3-oxoacyl-Coenzyme A thiol 0 1 0 0 0 11 43 ACHE acetylcholinesterase (Yt blood group) 1 0 0 0 0 12 58 ACTA1 actin, alpha 1, skeletal muscle 0 1 0 0 0 13 60 ACTB actin, beta 01000 1 14 71 ACTG1 actin, gamma 1 0 1 0 0 0 15 81 ACTN4 actinin, alpha 4 0 0 1 1 1 10700177 16 10096 ACTR3 ARP3 actin-related protein 3 homolog (yeast) 0 1 0 0 0 17 94 ACVRL1 activin A receptor type II-like 1 1 0 1 0 0 18 8038 ADAM12 ADAM metallopeptidase domain 12 (meltrin alpha) 1 0 0 0 0 19 8751 ADAM15 ADAM metallopeptidase domain 15 (metargidin) 1 0 0 0 0 20 8728 ADAM19 ADAM metallopeptidase domain 19 (meltrin beta) 1 0 0 0 0 21 81792 ADAMTS12 ADAM metallopeptidase with thrombospondin type 1 motif, 12 1 0 0 0 0 22 9507 ADAMTS4 ADAM metallopeptidase with thrombospondin type 1
    [Show full text]
  • ANKRD11 Gene Ankyrin Repeat Domain 11
    ANKRD11 gene ankyrin repeat domain 11 Normal Function The ANKRD11 gene provides instructions for making a protein called ankyrin repeat domain 11 (ANKRD11). As its name suggests, this protein contains multiple regions called ankyrin domains; proteins with these domains help other proteins interact with each other. The ANKRD11 protein interacts with certain proteins called histone deacetylases, which are important for controlling gene activity. Through these interactions, ANKRD11 affects when genes are turned on and off. For example, ANKRD11 brings together histone deacetylases and other proteins called p160 coactivators. This association regulates the ability of p160 coactivators to turn on gene activity. ANKRD11 may also enhance the activity of a protein called p53, which controls the growth and division (proliferation) and the self-destruction (apoptosis) of cells. The ANKRD11 protein is found in nerve cells (neurons) in the brain. During embryonic development, ANKRD11 helps regulate the proliferation of these cells and development of the brain. Researchers speculate that the protein may also be involved in the ability of neurons to change and adapt over time (plasticity), which is important for learning and memory. ANKRD11 may function in other cells in the body and appears to be involved in normal bone development. Health Conditions Related to Genetic Changes KBG syndrome Several ANKRD11 gene mutations have been found to cause KBG syndrome, a condition characterized by large upper front teeth and other unusual facial features, skeletal abnormalities, and intellectual disability. Most of these mutations lead to an abnormally short ANKRD11 protein, which likely has little or no function. Reduction of this protein's function is thought to underlie the signs and symptoms of the condition.
    [Show full text]
  • Supp Table 1.Pdf
    Upregulated genes in Hdac8 null cranial neural crest cells fold change Gene Symbol Gene Title 134.39 Stmn4 stathmin-like 4 46.05 Lhx1 LIM homeobox protein 1 31.45 Lect2 leukocyte cell-derived chemotaxin 2 31.09 Zfp108 zinc finger protein 108 27.74 0710007G10Rik RIKEN cDNA 0710007G10 gene 26.31 1700019O17Rik RIKEN cDNA 1700019O17 gene 25.72 Cyb561 Cytochrome b-561 25.35 Tsc22d1 TSC22 domain family, member 1 25.27 4921513I08Rik RIKEN cDNA 4921513I08 gene 24.58 Ofa oncofetal antigen 24.47 B230112I24Rik RIKEN cDNA B230112I24 gene 23.86 Uty ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome 22.84 D8Ertd268e DNA segment, Chr 8, ERATO Doi 268, expressed 19.78 Dag1 Dystroglycan 1 19.74 Pkn1 protein kinase N1 18.64 Cts8 cathepsin 8 18.23 1500012D20Rik RIKEN cDNA 1500012D20 gene 18.09 Slc43a2 solute carrier family 43, member 2 17.17 Pcm1 Pericentriolar material 1 17.17 Prg2 proteoglycan 2, bone marrow 17.11 LOC671579 hypothetical protein LOC671579 17.11 Slco1a5 solute carrier organic anion transporter family, member 1a5 17.02 Fbxl7 F-box and leucine-rich repeat protein 7 17.02 Kcns2 K+ voltage-gated channel, subfamily S, 2 16.93 AW493845 Expressed sequence AW493845 16.12 1600014K23Rik RIKEN cDNA 1600014K23 gene 15.71 Cst8 cystatin 8 (cystatin-related epididymal spermatogenic) 15.68 4922502D21Rik RIKEN cDNA 4922502D21 gene 15.32 2810011L19Rik RIKEN cDNA 2810011L19 gene 15.08 Btbd9 BTB (POZ) domain containing 9 14.77 Hoxa11os homeo box A11, opposite strand transcript 14.74 Obp1a odorant binding protein Ia 14.72 ORF28 open reading
    [Show full text]
  • Rabbit Anti-ANKRD11/FITC Conjugated Antibody-SL16651R
    SunLong Biotech Co.,LTD Tel: 0086-571- 56623320 Fax:0086-571- 56623318 E-mail:[email protected] www.sunlongbiotech.com Rabbit Anti-ANKRD11/FITC Conjugated antibody SL16651R-FITC Product Name: Anti-ANKRD11/FITC Chinese Name: FITC标记的锚蛋白重复结构域蛋白11抗体 ANCO 1; ANCO1; Ankyrin repeat containing cofactor 1; Ankyrin repeat domain 11; Alias: Ankyrin repeat domain containing protein 11; LZ16; T13; ANR11_HUMAN; Ankyrin repeat domain-containing protein 11; Ankyrin repeat-containing cofactor 1. Organism Species: Rabbit Clonality: Polyclonal React Species: ICC=1:50-200IF=1:50-200 Applications: not yet tested in other applications. optimal dilutions/concentrations should be determined by the end user. Molecular weight: 296kDa Form: Lyophilized or Liquid Concentration: 2mg/1ml immunogen: KLH conjugated synthetic peptide derived from human ANKRD11 Lsotype: IgG Purification: affinity purified by Protein A Storage Buffer: 0.01Mwww.sunlongbiotech.com TBS(pH7.4) with 1% BSA, 0.03% Proclin300 and 50% Glycerol. Store at -20 °C for one year. Avoid repeated freeze/thaw cycles. The lyophilized antibody is stable at room temperature for at least one month and for greater than a year Storage: when kept at -20°C. When reconstituted in sterile pH 7.4 0.01M PBS or diluent of antibody the antibody is stable for at least two weeks at 2-4 °C. background: Ankyrin is a membrane protein that mediates the attachment of the erythrocyte membrane skeleton to the plasma membrane and interacts with CD44 and inositol triphosphate. It contains three functional domains: a conserved N-terminal ankyrin Product Detail: repeat domain (ARD(consisting of 22–24 tandem repeats of 33 amino acids), a spectrin binding domain and a variably sized C-terminal regulatory domain.
    [Show full text]
  • Table S1. Folds of Genes Expression Change in HUVEC After Treatment with 10Ug/Ml S100A8
    Table S1. Folds of genes expression change in HUVEC after treatment with 10ug/mL S100A8 Probe a,b RefSeq Gene description fold-4hr fold-24hr A_23_P120883 NM_002133 heme oxygenase (decycling) 1 1.686 1.881 A_24_P418517 AL353580 nucleophosmin pseudogene 1.746 1.746 A_24_P59239 1.751 1.723 A_24_P170186 1.724 1.744 A_24_P178154 1.716 1.678 A_24_P58759 AC008628 similar to chaperonin containing Tcp1, subunit 1.651 1.670 5 (epsilon) A_24_P33429 AADB02001452 similar to nucleophosmin 1 1.635 1.680 A_24_P621434 1.605 1.709 A_24_P358337 1.687 1.595 A_24_P814872 1.635 1.598 A_24_P350160 NM_198262 arginine/serine-rich coiled-coil 2 1.690 1.543 A_24_P306921 AADB02017686 similar to ATP synthase, H+ transporting, 1.629 1.591 mitochondrial F0 complex, subunit B1 A_24_P332862 NM_175910 zinc finger protein 493 1.642 1.561 A_24_P202497 NM_020648 twisted gastrulation homolog 1 (Drosophila) 1.565 1.548 A_24_P209378 NM_016220 zinc finger protein 107 1.553 1.519 A_24_P281801 1.533 1.526 A_24_P32849 NM_001011725 heterogeneous nuclear ribonucleoprotein 1.764 A1-like 2 A_32_P165477 NM_014331 solute carrier family 7, (cationic amino acid 1.755 transporter, y+ system) member 11 A_32_P24376 NM_033184 keratin associated protein 2-1; keratin 1.742 associated protein 2-4; keratin associated protein 2-3; similar to keratin associated protein 2-4; keratin associated protein 2-2 A_32_P87013 NM_000584 interleukin 8 1.738 A_23_P253622 XM_001719592 similar to KIAA1641; similar to ankyrin repeat 1.725 domain 26; ankyrin repeat domain 36B A_23_P428287 NM_001080383 gap junction protein, gamma 1, 45kDa 1.724 A_24_P187094 1.723 A_24_P307075 AC097709 similar to heterogeneous nuclear 1.708 ribonucleoprotein A1 A_23_P142272 NM_019088 Paf1, RNA polymerase II associated factor, 1.706 homolog (S.
    [Show full text]
  • Comprehensive Analysis of Clinical Spectrum and Genotype Associations in Chinese and Literature Reported KBG Syndrome
    842 Original Article Comprehensive analysis of clinical spectrum and genotype associations in Chinese and literature reported KBG syndrome Qiuyue Li, Chengjun Sun, Lin Yang, Wei Lu, Feihong Luo^ Department of Pediatric Endocrinology and Inherited Metabolic Diseases, Children’s Hospital of Fudan University, Shanghai, China Contributions: (I) Conception and design: Q Li, C Sun, F Luo; (II) Administrative support: L Yang, F Luo; (III) Provision of study materials or patients: L Yang, W Lu; (IV) Collection and assembly of data: Q Li, C Sun, L Yang; (V) Data analysis and interpretation: Q Li, C Sun, W Lu; (VI) Manuscript writing: All authors; (VII) Final approval of manuscript: All authors. Correspondence to: Feihong Luo. Department of Endocrinology and Inherited Metabolic Diseases, Children’s Hospital of Fudan University, 399 Wanyuan Road, Shanghai, China. Email: [email protected]. Background: Patients with KBG Syndrome due to ANKRD11 mutations and 16q24.3 microdeletions including ANKRD11 were identified. Classical and most frequent phenotypes include various degrees of intelligence disability (ID), short stature (SS), delayed bone age, macrodontia, distinctive facial features and skeletal anomalies. The variable expressivity of KBG syndrome makes it challenging to establish genotype- phenotype correlations, which also affects further studies for this novel syndrome. We aim to report three unrelated patients with KBG syndrome caused by ANKRD11 gene pathological variants and to evaluate potential associations among ANKRD11 gene variant types, the 16q24.3 microdeletion, and the clinical spectrum of KBG syndrome. Methods: The genetic etiology of three unreported KBG patients was identified by whole exome sequencing and confirmed via Sanger sequencing. Literature review was conducted to summarize the phenotype-genotype relationship based on three unreported Chinese cases and 186 reported cases.
    [Show full text]
  • Molecular Mechanisms Regulating Copper Balance in Human Cells
    MOLECULAR MECHANISMS REGULATING COPPER BALANCE IN HUMAN CELLS by Nesrin M. Hasan A dissertation submitted to Johns Hopkins University in conformity with the requirements for the degree of Doctor of Philosophy Baltimore, Maryland August 2014 ©2014 Nesrin M. Hasan All Rights Reserved Intended to be blank ii ABSTRACT Precise copper balance is essential for normal growth, differentiation, and function of human cells. Loss of copper homeostasis is associated with heart hypertrophy, liver failure, neuronal de-myelination and other pathologies. The copper-transporting ATPases ATP7A and ATP7B maintain cellular copper homeostasis. In response to copper elevation, they traffic from the trans-Golgi network (TGN) to vesicles where they sequester excess copper for further export. The mechanisms regulating activity and trafficking of ATP7A/7B are not well understood. Our studies focused on determining the role of kinase-mediated phosphorylation in copper induced trafficking of ATP7B, and identifying and characterizing novel regulators of ATP7A. We have shown that Ser- 340/341 region of ATP7B plays an important role in interactions between the N-terminus and the nucleotide-binding domain and that mutations in these residues result in vesicular localization of the protein independent of the intracellular copper levels. We have determined that structural changes that alter the inter-domain interactions initiate exit of ATP7B from the TGN and that the role of copper-induced kinase-mediated hyperphosphorylation might be to maintain an open interface between the domains of ATP7B. In a separate study, seven proteins were identified, which upon knockdown result in increased intracellular copper levels. We performed an initial characterization of the knock-downs and obtained intriguing results indicating that these proteins regulate ATP7A protein levels, post-translational modifications, and copper-dependent trafficking.
    [Show full text]
  • (P -Value<0.05, Fold Change≥1.4), 4 Vs. 0 Gy Irradiation
    Table S1: Significant differentially expressed genes (P -Value<0.05, Fold Change≥1.4), 4 vs. 0 Gy irradiation Genbank Fold Change P -Value Gene Symbol Description Accession Q9F8M7_CARHY (Q9F8M7) DTDP-glucose 4,6-dehydratase (Fragment), partial (9%) 6.70 0.017399678 THC2699065 [THC2719287] 5.53 0.003379195 BC013657 BC013657 Homo sapiens cDNA clone IMAGE:4152983, partial cds. [BC013657] 5.10 0.024641735 THC2750781 Ciliary dynein heavy chain 5 (Axonemal beta dynein heavy chain 5) (HL1). 4.07 0.04353262 DNAH5 [Source:Uniprot/SWISSPROT;Acc:Q8TE73] [ENST00000382416] 3.81 0.002855909 NM_145263 SPATA18 Homo sapiens spermatogenesis associated 18 homolog (rat) (SPATA18), mRNA [NM_145263] AA418814 zw01a02.s1 Soares_NhHMPu_S1 Homo sapiens cDNA clone IMAGE:767978 3', 3.69 0.03203913 AA418814 AA418814 mRNA sequence [AA418814] AL356953 leucine-rich repeat-containing G protein-coupled receptor 6 {Homo sapiens} (exp=0; 3.63 0.0277936 THC2705989 wgp=1; cg=0), partial (4%) [THC2752981] AA484677 ne64a07.s1 NCI_CGAP_Alv1 Homo sapiens cDNA clone IMAGE:909012, mRNA 3.63 0.027098073 AA484677 AA484677 sequence [AA484677] oe06h09.s1 NCI_CGAP_Ov2 Homo sapiens cDNA clone IMAGE:1385153, mRNA sequence 3.48 0.04468495 AA837799 AA837799 [AA837799] Homo sapiens hypothetical protein LOC340109, mRNA (cDNA clone IMAGE:5578073), partial 3.27 0.031178378 BC039509 LOC643401 cds. [BC039509] Homo sapiens Fas (TNF receptor superfamily, member 6) (FAS), transcript variant 1, mRNA 3.24 0.022156298 NM_000043 FAS [NM_000043] 3.20 0.021043295 A_32_P125056 BF803942 CM2-CI0135-021100-477-g08 CI0135 Homo sapiens cDNA, mRNA sequence 3.04 0.043389246 BF803942 BF803942 [BF803942] 3.03 0.002430239 NM_015920 RPS27L Homo sapiens ribosomal protein S27-like (RPS27L), mRNA [NM_015920] Homo sapiens tumor necrosis factor receptor superfamily, member 10c, decoy without an 2.98 0.021202829 NM_003841 TNFRSF10C intracellular domain (TNFRSF10C), mRNA [NM_003841] 2.97 0.03243901 AB002384 C6orf32 Homo sapiens mRNA for KIAA0386 gene, partial cds.
    [Show full text]
  • Supp Table 6.Pdf
    Supplementary Table 6. Processes associated to the 2037 SCL candidate target genes ID Symbol Entrez Gene Name Process NM_178114 AMIGO2 adhesion molecule with Ig-like domain 2 adhesion NM_033474 ARVCF armadillo repeat gene deletes in velocardiofacial syndrome adhesion NM_027060 BTBD9 BTB (POZ) domain containing 9 adhesion NM_001039149 CD226 CD226 molecule adhesion NM_010581 CD47 CD47 molecule adhesion NM_023370 CDH23 cadherin-like 23 adhesion NM_207298 CERCAM cerebral endothelial cell adhesion molecule adhesion NM_021719 CLDN15 claudin 15 adhesion NM_009902 CLDN3 claudin 3 adhesion NM_008779 CNTN3 contactin 3 (plasmacytoma associated) adhesion NM_015734 COL5A1 collagen, type V, alpha 1 adhesion NM_007803 CTTN cortactin adhesion NM_009142 CX3CL1 chemokine (C-X3-C motif) ligand 1 adhesion NM_031174 DSCAM Down syndrome cell adhesion molecule adhesion NM_145158 EMILIN2 elastin microfibril interfacer 2 adhesion NM_001081286 FAT1 FAT tumor suppressor homolog 1 (Drosophila) adhesion NM_001080814 FAT3 FAT tumor suppressor homolog 3 (Drosophila) adhesion NM_153795 FERMT3 fermitin family homolog 3 (Drosophila) adhesion NM_010494 ICAM2 intercellular adhesion molecule 2 adhesion NM_023892 ICAM4 (includes EG:3386) intercellular adhesion molecule 4 (Landsteiner-Wiener blood group)adhesion NM_001001979 MEGF10 multiple EGF-like-domains 10 adhesion NM_172522 MEGF11 multiple EGF-like-domains 11 adhesion NM_010739 MUC13 mucin 13, cell surface associated adhesion NM_013610 NINJ1 ninjurin 1 adhesion NM_016718 NINJ2 ninjurin 2 adhesion NM_172932 NLGN3 neuroligin
    [Show full text]
  • Common Differentially Expressed Genes and Pathways Correlating Both Coronary Artery Disease and Atrial Fibrillation
    EXCLI Journal 2021;20:126-141– ISSN 1611-2156 Received: December 08, 2020, accepted: January 11, 2021, published: January 18, 2021 Supplementary material to: Original article: COMMON DIFFERENTIALLY EXPRESSED GENES AND PATHWAYS CORRELATING BOTH CORONARY ARTERY DISEASE AND ATRIAL FIBRILLATION Youjing Zheng, Jia-Qiang He* Department of Biomedical Sciences and Pathobiology, College of Veterinary Medicine, Virginia Tech, Blacksburg, VA 24061, USA * Corresponding author: Jia-Qiang He, Department of Biomedical Sciences and Pathobiology, Virginia Tech, Phase II, Room 252B, Blacksburg, VA 24061, USA. Tel: 1-540-231-2032. E-mail: [email protected] https://orcid.org/0000-0002-4825-7046 Youjing Zheng https://orcid.org/0000-0002-0640-5960 Jia-Qiang He http://dx.doi.org/10.17179/excli2020-3262 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/). Supplemental Table 1: Abbreviations used in the paper Abbreviation Full name ABCA5 ATP binding cassette subfamily A member 5 ABCB6 ATP binding cassette subfamily B member 6 (Langereis blood group) ABCB9 ATP binding cassette subfamily B member 9 ABCC10 ATP binding cassette subfamily C member 10 ABCC13 ATP binding cassette subfamily C member 13 (pseudogene) ABCC5 ATP binding cassette subfamily C member 5 ABCD3 ATP binding cassette subfamily D member 3 ABCE1 ATP binding cassette subfamily E member 1 ABCG1 ATP binding cassette subfamily G member 1 ABCG4 ATP binding cassette subfamily G member 4 ABHD18 Abhydrolase domain
    [Show full text]
  • KBG Syndrome Involving a Single Nucleotide Duplication in ANKRD11
    Downloaded from molecularcasestudies.cshlp.org on September 30, 2021 - Published by Cold Spring Harbor Laboratory Press Molecular Case Study Research Report Title: KBG syndrome involving a single nucleotide duplication in ANKRD11 Authors: Robert Kleyner1*, Janet Malcolmson1,2*, David Tegay1, Kenneth Ward3, Annette Maughan4, Glenn Maughan5, Lesa Nelson3, Kai Wang6,7,8, Reid Robison8, Gholson J. Lyon1,8,# 1Stanley Institute for Cognitive Genomics, One Bungtown Road, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA; 2Genetic Counseling Graduate Program, Long Island University (LIU), 720 Northern Boulevard, Brookville, NY 11548; 3Affiliated Genetics, Inc. 2749 East Parleys Way Suite 100 Salt Lake City, UT 84109; 4Epilepsy Association of Utah, 8539 So. Redwood Rd., West Jordan, UT. 84088; 5KBG Syndrome Foundation, 8539 So. Redwood Rd., West Jordan, UT. 84088; 6Zilkha Neurogenetic Institute, University of Southern California, Los Angeles, CA 90089, US; 7Department of Psychiatry & Behavioral Sciences, Keck School of Medicine, University of Southern California, Los Angeles, CA 90033, USA; 8Utah Foundation for Biomedical Research, Salt Lake City, UT *These authors contributed equally to this work. #To whom correspondence should be addressed: Email: [email protected] Downloaded from molecularcasestudies.cshlp.org on September 30, 2021 - Published by Cold Spring Harbor Laboratory Press ABSTRACT KBG syndrome is a rare autosomal dominant genetic condition characterized by neurological involvement and distinct facial, hand and skeletal features. Over 70 cases have been reported; however, it is likely that KBG syndrome is underdiagnosed due to lack of comprehensive characterization of the heterogeneous phenotypic features. We describe the clinical manifestations in a male currently at 13 years of age, who exhibited symptoms including epilepsy, severe developmental delay, distinct facial features and hand anomalies, without a positive genetic diagnosis.
    [Show full text]
  • ANKRD11 Rabbit Polyclonal Antibody – TA590542 | Origene
    OriGene Technologies, Inc. 9620 Medical Center Drive, Ste 200 Rockville, MD 20850, US Phone: +1-888-267-4436 [email protected] EU: [email protected] CN: [email protected] Product datasheet for TA590542 ANKRD11 Rabbit Polyclonal Antibody Product data: Product Type: Primary Antibodies Applications: ELISA, IF, IHC, WB Recommended Dilution: ELISA: 1:100-1:2000; IHC: 1:200; IF: 1:50 Reactivity: Human Host: Rabbit Isotype: IgG Clonality: Polyclonal Immunogen: DNA immunization. This antibody is specific for the C Terminus Region of the target protein. Formulation: 20 mM Potassium Phosphate, 150 mM Sodium Chloride, pH 7.0 Concentration: 1.2 mg/ml Purification: Purified from mouse ascites fluids or tissue culture supernatant by affinity chromatography (protein A/G) Conjugation: Unconjugated Storage: Store at -20°C as received. Stability: Stable for 12 months from date of receipt. Gene Name: ankyrin repeat domain 11 Database Link: NP_037407 Entrez Gene 29123 Human Q6UB99 This product is to be used for laboratory only. Not for diagnostic or therapeutic use. View online » ©2021 OriGene Technologies, Inc., 9620 Medical Center Drive, Ste 200, Rockville, MD 20850, US 1 / 4 ANKRD11 Rabbit Polyclonal Antibody – TA590542 Background: Ankyrin is a membrane protein that mediates the attachment of the erythrocyte membrane skeleton to the plasma membrane and interacts with CD44 and inositol triphosphate. It contains three functional domains: a conserved N-terminal ankyrin repeat domain (ARD(consisting of 22-24 tandem repeats of 33 amino acids), a spectrin binding domain and a variably sized C-terminal regulatory domain. The ankyrin repeat is a 33-residue motif in proteins consisting of two alpha helices separated by loops.
    [Show full text]