Deficiencies in Our Understanding of the Hydro-Ecology of Several Native Australian Fish: a Rapid Evidence Synthesis

Home , Cape galaxias, Eastern freshwater cod, Estuary perch, Gadopsis, Galaxiella pusilla, Glossamia

Marine and Freshwater Research, 2018, 69, 1208–1221 © CSIRO 2018 https://doi.org/10.1071/MF17241

Supplementary material

Deficiencies in our understanding of the hydro-ecology of several native Australian fish: a rapid evidence synthesis

Kimberly A. MillerA,D, Roser Casas-MuletB,A, Siobhan C. de LittleA, Michael J. StewardsonA, Wayne M. KosterC and J. Angus WebbA,E

ADepartment of Infrastructure Engineering, The University of Melbourne, Parkville, Vic. 3010, Australia.

BWater Research Institute, Cardiff University, The Sir Martin Evans Building, Museum Avenue, Cardiff, CF10 3AX, UK.

CArthur Rylah Institute for Environmental Research, Department of Environment, Land, Water and Planning, Heidelberg, Vic. 3084, Australia.

DPresent address: Healesville Sanctuary, Badger Creek Road, Healesville, Vic. 3777, Australia.

ECorresponding author. Email address: [email protected]

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Table S1. All papers located by standardised searches and following citation trails for the two rapid evidence assessments All papers are marked as Relevant or Irrelevant based on a reading of the title and abstract. Those deemed relevant on the first screen are marked as Relevant or Irrelevant based on a full assessment of the reference.The table contains incomplete citation details for a number of irrelevant papers. The information provided is as returned from the different evidence databases. Given that these references were not relevant to our review, we have not sought out the full citation details. Source Reference Relevance Relevance (based on title (after reading and abstract) full text) Pygmy perch & carp gudgeons Search hit Anon (1998) Soy protein-based formulas: recommendations for use in infant feeding. Available at Irrelevant http://go.galegroup.com/ps/i.do?id=GALE%7CA20303361&v=2.1&u=unimelb&it=r&p=EAIM&sw=w Search hit Anon (2007) Mission possible: taking control of pediatric GERD. Available at Irrelevant http://go.galegroup.com/ps/i.do?id=GALE%7CA168360791&v=2.1&u=unimelb&it=r&p=EAIM&sw=w Search hit Osman, A. G. M., Abd El Reheem, A.-E. B. M., AbuelFadl, K. Y., and GadEl-Rab, A. G. (2010). Enzymatic and histopathologic biomarkers as indicators of aquatic Irrelevant pollution in fishes. Nature and Science 2, 1302. doi:10.4236/ns.2010.211158 Search hit Tighe, M. P., Afzal, N. A., Bevan, A., and Beattie, R. M. (2009). Current pharmacological management of gastro-esophageal reflux in children: an evidence-based Irrelevant systematic review. Paediatric Drugs 11, 185. doi:10.2165/00148581-200911030-00004 Search hit Agostoni, C., Giovannini, M., and Enrica, R. (1995) Dietary fibre in weaning foods of young children. Available at Irrelevant http://go.galegroup.com/ps/i.do?id=GALE%7CA17809710&v=2.1&u=unimelb&it=r&p=EAIM&sw=w Search hit Allen, M. J., Groce, A. K., and Rosenblatt, R. H. (2001). Addition of Blacklip Dragonet, Synchiropus atrilabiatus (Garman, 1899) (Pisces: Callionymidae) to the Irrelevant California Ichthyofauna. Bulletin of the Southern California Academy of Sciences 100, 149. Search hit Alves, M. J., Coelho, H., Collares-Pereira, M. J., and Coelho, M. M. (2001). Mitochondrial DNA variation in the highly endangered cyprinid fish Anaecypris Irrelevant hispanica: importance for conservation. Heredity 87, 463–473. doi:10.1046/j.1365-2540.2001.00929.x Search hit Forsgren, E., Amundsen, T., Bjelvenmark, J., and Borg, Å. A. (2004). Unusually dynamic sex roles in a fish. Nature 429, 551. doi:10.1038/nature02562 Irrelevant Search hit Anderson, J. R., Mackay, N. J., and Lake, J. S. (1971). Notes on reproductive behavior and ontogeny in 2 species of Hypseleotris (=Carassiops) (Gobiidae- Relevant Irrelevant Teleostei). Australian Journal of Marine and Freshwater Research 22, 139–140. doi:10.1071/MF9710139 Search hit Anon (2006). Student award winners at the 2006 annual meeting. Bulletin of the Southern California Academy of Sciences 105, S1. Irrelevant Search hit Anon (2011). Science; new science findings from Griffith University published. Ecology, Environmental Conservation 365. Irrelevant Search hit Anon (2012). Animal ecology; findings from Charles Darwin University broaden understanding of animal ecology. Energy & Ecology 141. Irrelevant Search hit Anon (2012). Animal ecology; findings from University of Queensland advance knowledge in animal ecology. Ecology, Environmental Conservation 80. Irrelevant Search hit Anon (2012). Conservation genetics; study results from South Australian Museum provide new insights into conservation genetics. Ecology, Environmental Irrelevant Conservation 614. Search hit Anon (2012). Environmental metrics; findings from Griffith University in environmental metrics reported. Ecology, Environmental Conservation 163. Irrelevant Search hit Anon (2012). Freshwater research; La Trobe University details research in freshwater research. Ecology, Environmental Conservation 174. Irrelevant Search hit Anon (2012). Science; research from Arizona State University in the area of science described. Science Letter 5425. Irrelevant Search hit Anon (2012). Science; scientists at Catholic University target science. Science Letter 2421. Irrelevant Search hit Anon (2013). Freshwater research; study findings from Griffith University provide new insights into freshwater research. Ecology, Environmental Conservation 601. Irrelevant Search hit Anonymous (2003). 2003 buyer’s guide. Journal of Housing and Community Development 60, BG1–BG28. Irrelevant Search hit Anonymous (2006). Distributor news: news digests. Nation’s Restaurant News 40, 16. Irrelevant Search hit Anonymous (2008). Fisheries research; new fisheries research study findings recently were reported by L. Vilizzi and co-researchers. Ecology, Environmental & Irrelevant Conservation Business 107. Search hit Anonymous (2008). Marine biology; findings from Macquarie University in marine biology reported. Ecology, Environmental Conservation 38. Irrelevant Search hit Anonymous (2008) Marine biology; research on marine biology reported by I.G. Stuart et al. Ecology, Environmental & Conservation Business: 234. Irrelevant Search hit Anonymous (2008). Marine biology; scientists at James Cook University describe research in marine biology. Ecology, Environmental Conservation 76. Irrelevant

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Source Reference Relevance Relevance (based on title (after reading and abstract) full text) Pygmy perch & carp gudgeons Search hit Anonymous (2009). Aquatic conservation; recent findings in aquatic conservation described by J.T. Knight and colleagues. Ecology, Environmental Conservation Irrelevant 272. Search hit Anonymous (2009). Ecology; data on ecology detailed by researchers at University of Auckland. Ecology, Environmental Conservation 291. Irrelevant Search hit Anonymous (2009). Marine biology; research on marine biology detailed by J.T. Knight and co-authors. Ecology, Environmental Conservation 112. Irrelevant Search hit Anonymous (2009). Veterinary research; data on veterinary research discussed by F.J. Stephens and colleagues. Veterinary Week 75. Irrelevant Search hit Anonymous (2010). Biological invasions; new biological invasions research has been reported by scientists at University of Sydney. Science Letter 1771. Irrelevant Search hit Anonymous (2010). Conservation genetics; new findings reported from M.P. Hammer and co-authors describe advances in conservation genetics. Ecology, Irrelevant Environmental Conservation 187. Search hit Anonymous (2010). Ecology; Reports from Deakin University highlight recent research in ecology. Energy & Ecology Business 1145. Irrelevant Search hit Anonymous (2010). Evolutionary Biology; New evolutionary biology data have been reported by researchers at Monash University. Science Letter 1033. Irrelevant Search hit Anonymous (2010). Freshwater Research; Research on freshwater research described by scientists at Deakin University. Ecology, Environmental Conservation 281. Irrelevant Search hit Anonymous (2010). Freshwater research; research on freshwater research reported by scientists at La Trobe University. Ecology, Environmental Conservation 233. Irrelevant Search hit Anonymous (2010). Marine biology; research by J. Lyon and colleagues in marine biology provides new insights. Ecology, Environmental Conservation 375. Irrelevant Search hit Anonymous (2011). Biological Conservation; new biological conservation findings from R.J. Rolls and co-researchers published. Ecology, Environmental Irrelevant Conservation 274. Search hit Anonymous (2011). Ecology; studies from University of Sydney in the area of ecology described. Ecology, Environmental Conservation 655. Irrelevant Search hit Anonymous (2011). Environmental science and technology; study results from M.A. Trenfield and colleagues update understanding of environmental science and Irrelevant technology. Ecology, Environmental Conservation 1023. Search hit Anonymous (2011). Fish biology; research from Griffith University provides new data on fish biology. Science Letter 2204. Irrelevant Search hit Anonymous (2011). Marine biology; data on marine biology described by researchers at Murdoch University. Ecology, Environmental Conservation 160. Irrelevant Search hit Arthington, A. H. (2009). Australian lungfish, Neoceratodus forsteri, threatened by a new dam. Environmental Biology of Fishes 84, 211–221. doi:10.1007/s10641- Irrelevant 008-9414-y Search hit Arthington, A. H., and Marshall, C. J. (1996). Threatened fishes of the world: Nannoperca oxleyana Whitley, 1940 (Nannopercidae). Environmental Biology of Irrelevant Fishes 46, 150. doi:10.1007/BF00005216 Search hit Arthington, A. H., Milton, D. A., and McKay, R. J. (1983). Effects of urban development and habitat alterations on the distribution and abundance of native and Relevant Relevant exotic freshwater fish in the Brisbane region, Queensland. Australian Journal of Ecology 8, 87–101. doi:10.1111/j.1442-9993.1983.tb01597.x Search hit Attard, C. R. M., Brauer, C. J., Van Zoelen, J. D., Sasaki, M., Hammer, M. P., Morrison, L., Harris, J. O., Moller, L. M., and Beheregaray, L. B. (2016a). Multi- Irrelevant generational evaluation of genetic diversity and parentage in captive southern pygmy perch (Nannoperca australis). Conservation Genetics 17(6), 1469–1473. doi:10.1007/s10592-016-0873-y Search hit Attard, C. R. M., Moller, L. M., Sasaki, M., Hammer, M. P., Bice, C. M., Brauer, C. J., Carvalho, D. C., Harris, J. O., and Beheregaray, L. B. (2016b). A novel Irrelevant holistic framework for genetic-based captive-breeding and reintroduction programs. Conservation Biology 30(5), 1060–1069. doi:10.1111/cobi.12699 Search hit Auty, E. H. (1978). Reproductive-behavior and early development of empire fish Hypseleotris compressus (Eleotridae). Australian Journal of Marine and Relevant Irrelevant Freshwater Research 29, 585–597. doi:10.1071/MF9780585 Search hit Jones, A. G., Ostlund-Nilsson, S., and Avise, J. C. (1998). A microsatellite assessment of sneaked fertilizations and egg thievery in the fifteenspine stickleback. Irrelevant Evolution 52, 848. doi:10.1111/j.1558-5646.1998.tb03709.x Search hit Brian, J. V., Harris, C. A., Scholze, M., Backhaus, Booy, P., T., Lamoree, M., Pojana, G., Jonkers, N., Runnalls, T., Bonfa, A., Marcomini, A., and Sumpter, J. P. Irrelevant (2005). Accurate prediction of the response of freshwater fish to a mixture of estrogenic chemicals. Environmental Health Perspectives 113, 721. doi:10.1289/ehp.7598 Search hit Baker, A. M., Hurwood, D. A., Krogh, M., and Hughes, J. M. (2004). Mitochondrial DNA signatures of restricted gene flow within divergent lineages of an atyid Irrelevant shrimp (Paratya australiensis). Heredity 93, 196–207. doi:10.1038/sj.hdy.6800493 Search hit Kavanagh, R. J., Balch, G. C., Kiparissis, Y., Niimi, A. J., Sherry, J., Tinson, C., and Metcalfe, C. D. (2004). Endocrine disruption and altered gonadal development Irrelevant in white perch (Morone americana) from the lower Great Lakes region. Environmental Health Perspectives 112, 898. doi:10.1289/ehp.6514 Search hit Kiparissis, Y., Balch, G. C., Metcalfe, T. L., and Metcalfe, C. D. (2003). Effects of the isoflavones genistein and equol on the gonadal development of Japanese Irrelevant medaka (Oryzias latipes). Environmental Health Perspectives 111, 1158. doi:10.1289/ehp.5928 Search hit Balcombe, S. R., Sheldon, F., Capon, S. J., Bond, N. R., Hadwen, W. L., Marsh, N., and Bernays, S. J. (2011). Climate-change threats to native fish in degraded Irrelevant rivers and floodplains of the Murray–Darling Basin, Australia. Marine and Freshwater Research 62, 1099–1114. doi:10.1071/MF11059

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Source Reference Relevance Relevance (based on title (after reading and abstract) full text) Pygmy perch & carp gudgeons Search hit Balcombe, S. R., and Closs, G. P. (2000). Variation in carp gudgeon (Hypseleotris spp.) catch rate in dense macrophytes. Journal of Freshwater Ecology 15, 389– Relevant Irrelevant 395. doi:10.1080/02705060.2000.9663757 Search hit Balcombe, S. R., and Closs, G. P. (2004). Spatial relationships and temporal variability in a littoral macrophyte fish assemblage. Marine and Freshwater Research Relevant Irrelevant 55, 609–617. doi:10.1071/MF03170 Search hit Balcombe, S. R., and Humphries, P. (2006). Diet of the western carp gudgeon (Hypseleotris klunzingeri Ogilby) in an Australian floodplain lake: the role of water Relevant Irrelevant level stability. Journal of Fish Biology 68, 1484–1493. doi:10.1111/j.0022-1112.2006.001036.x Search hit Balcombe, S. R., and Closs, G. P. (2016). Patchiness in food resources drives fish abundances in emergent macrophytes under field and experimental conditions. Relevant Irrelevant Hydrobiologia 781(1), 127–142. doi:10.1007/s10750-016-2828-1 Search hit Balirwa, J. S., Chapman, C. A., Chapman, L. J., Cowx, I. G., Geheb, K., Kaufman, L., Lowe-McConnell, R. H., Seehausen, O., Wanink, J. H., Welcomme, R. L., Irrelevant and Witte, F. (2003). Biodiversity and fishery sustainability in the Lake Victoria basin: an unexpected marriage? Bioscience 53, 703. doi:10.1641/0006- 3568(2003)053[0703:BAFSIT]2.0.CO;2 Search hit Cacciari, E., Milani, S., Balsamo, A., Dammacco, F., De Luca, F., Chiarelli, F., Pasquino, A. M., Tonini, G., and Vanelli, M. (2002). Italian cross-sectional growth Irrelevant charts for height, weight and BMI (6-20y). European Journal of Clinical Nutrition 56, 171. doi:10.1038/sj.ejcn.1601314 Search hit Bandoli, J. H., Morera, D. C., and Walls, M. L. (2004). Incipient second dorsal fin egg mimics in the spottail darter, Etheostoma squamiceps? Proceedings of the Irrelevant Indiana Academy of Sciences 113, 115. Search hit Barretti, M. (2004). What do we know about the professional socialization of our students? Journal of Social Work Education 40, 255. Irrelevant doi:10.1080/10437797.2004.10778493 Search hit Bartell, P. A., and Gwinner, E. (2005). A separate circadian oscillator controls nocturnal migratory restlessness in the songbird Sylvia borin. Journal of Biological Irrelevant Rhythms 20, 538. doi:10.1177/0748730405281826 Search hit Baumgartner, L. J., Stuart, I. G., and Zampatti, B. P. (2008). Determining diel variation in fish assemblages downstream of three weirs in a regulated lowland river. Relevant Irrelevant Journal of Fish Biology 72, 218–232. doi:10.1111/j.1095-8649.2007.01696.x Search hit Baumgartner, L. J., and Harris, J. H. (2007). Passage of non-salmonid fish through a Deelder lock on a lowland river. River Research and Applications 23, 1058– Relevant Irrelevant 1069. doi:10.1002/rra.1032 Search hit Beatty, S. J., and Morgan, D. L. (2010). Teleosts, agnathans and macroinvertebrates as bioindicators of ecological health in a south-western Australian river. Journal Relevant Irrelevant of the Royal Society of Western Australia 93, 65–79. Search hit Beatty, S. J., Morgan, D. L., Rashnavadi, M., and Lymbery, A. J. (2011). Salinity tolerances of endemic freshwater fishes of south-western Australia: implications Relevant Irrelevant for conservation in a biodiversity hotspot. Marine and Freshwater Research 62, 91–100. doi:10.1071/MF10100 Search hit Beatty, S. J., Morgan, D. L., and Lymbery, A. J. (2014). Implications of climate change for potamodromous fishes. Global Change Biology 20(6), 1794–1807. Relevant Irrelevant doi:10.1111/gcb.12444 Search hit Beesley, L., King, A. J., Amtstaetter, F., Koehn, J. D., Gawne, B., Price, A., Nielsen, D. L., Vilizzi, L., and Meredith, S. N. (2012). Does flooding affect Relevant Relevant spatiotemporal variation of fish assemblages in temperate floodplain wetlands? Freshwater Biology 57, 2230–2246. doi:10.1111/j.1365-2427.2012.02865.x Search hit Bernal Casasola, D., Alonso Villalobos, C., and Gracia Prieto, F. J. (2011) De la acuicultura en Baetica A propósito de la posible piscina-vivero del yacimiento Irrelevant haliéutico del Cabo Trafalgar (Cádiz). Zephyrus 67: 145-160. [Fish farming in Baetica. The piscina of the halieutic site at Trafalgar Cape (Cádiz).] Search hit Bertozzi, T., Adams, M., and Walker, K. F. (2000). Species boundaries in carp gudgeons (Eleotrididae : Hypseleotris) from the River Murray, South Australia: Relevant Irrelevant evidence for multiple species and extensive hybridization. Marine and Freshwater Research 51, 805–815. doi:10.1071/MF00039 Search hit Bice, C. M., Gehrig, S. L., Zampatti, B. P., Nicol, J. M., Wilson, P., Leigh, S. L., and Marsland, K. (2014). Flow-induced alterations to fish assemblages, habitat and Relevant Relevant fish-habitat associations in a regulated lowland river. Hydrobiologia 722(1), 205–222. doi:10.1007/s10750-013-1701-8 Search hit Bogo, M., Globerman, J., Hughes, J., Power, R., and Regehr, C. (2002). Evaluating a measure of student field performance in direct service: testing reliability and Irrelevant validity of explicit criteria. Journal of Social Work Education 38, 385. doi:10.1080/10437797.2002.10779106 Search hit GlenMaye, L. F., and Bolin B (2007). Students with psychiatric disabilities: an exploratory study of program practices. Journal of Social Work Education 43, 117. Irrelevant doi:10.5175/JSWE.2007.200404112 Search hit Bond, N. R., and Lake, P. S. (2003). Characterizing fish-habitat associations in streams as the first step in ecological restoration. Austral Ecology 28, 611–621. Relevant Irrelevant doi:10.1046/j.1442-9993.2003.t01-1-01317.x Search hit Bond, N. R., and Lake, P. S. (2005). Ecological restoration and large-scale ecological disturbance: The effects of drought on the response by fish to a habitat Relevant Irrelevant restoration experiment. Restoration Ecology 13, 39–48. doi:10.1111/j.1526-100X.2005.00006.x Search hit Bookman, A., and Kimbrel, D. (2011) Families and elder care in the twenty-first century. Available at Irrelevant http://go.galegroup.com/ps/i.do?id=GALE%7CA271051053&v=2.1&u=unimelb&it=r&p=EAIM&sw=w Page 4 of 30 Marine and Freshwater Research © CSIRO 2018 https://doi.org/10.1071/MF17241

Source Reference Relevance Relevance (based on title (after reading and abstract) full text) Pygmy perch & carp gudgeons Search hit Boone, E. L., Stewart-Koster, B., and Kennard, M. J. (2012). A hierarchical zero-inflated Poisson regression model for stream fish distribution and abundance. Relevant Irrelevant Environmetrics 23, 207–218. doi:10.1002/env.1145 Search hit Booth, M. T., and Shipley, A. J. (2012). Spatial dynamics and growth of two native species of catostomids: are movements restricted? The Southwestern Naturalist Irrelevant 57, 248. doi:10.1894/0038-4909-57.3.248 Search hit Mandich, A., Massari, A., Bottero, S., Pizzicori, P., Goos, H., and Marino, G. (2004). Plasma sex steroid and vitellogenin profiles during gonad development in wild Irrelevant Mediterranean amberjack (Seriola dumerilii). Marine Biology 144, 127. doi:10.1007/s00227-003-1185-6 Search hit Boxall, G. D., Sandberg, J. J., and Kroon, F. J. (2002). Population structure, movement and habitat preferences of the purple-spotted gudgeon, Mogurnda adspersa. Relevant Irrelevant Marine and Freshwater Research 53, 909–917. doi:10.1071/MF01039 Search hit Bracamonte, S. E., Smith, S., Hammer, M., Pavey, S., Sunnucks, P., and Beheregaray, L. B. (2015). Characterization of MHC class 11B for four endangered Irrelevant Australian freshwater fishes obtained from ecologically divergent populations. Fish & Shellfish Immunology 46(2), 468–476 doi:10.1016/j.fsi.2015.06.009. Search hit Brauer, C. J., Hammer, M. P., and Beheregaray, L. B. (2016). Riverscape genomics of a threatened fish across a hydroclimatically heterogeneous river basin. Relevant Irrelevant Molecular Ecology 25(20), 5093–5113. doi:10.1111/mec.13830 Search hit Brauer, C. J., Unmack, P. J., Hammer, M. P., Adams, M., and Beheregaray, L. B. (2013). Catchment-scale conservation units identified for the threatened Yarra Relevant Irrelevant Pygmy Perch (Nannoperca obscura) in highly modified river systems. PLoS One 8(12), e82953 doi:10.1371/journal.pone.0082953. Search hit Brodersen, M., Richman, J., and Swick, D. (2009). Risks and mitigating factors in decisions to accept students with criminal records. Journal of Social Work Irrelevant Education 45, 349. doi:10.5175/JSWE.2009.200800081 Search hit Bruton, M. N. (1996). Threatened fishes of the world: Hypseleotris dayi Smith, 1950 (Eleotridae). Environmental Biology of Fishes 46, 184. Irrelevant doi:10.1007/BF00005220 Search hit Bywater, J. F., Banaczkowski, R., and Bailey, M. (1991). Sensitivity to uranium of 6 species of tropical fresh-water fishes and 4 species of cladocerans from Relevant Irrelevant northern Australia. Environmental Toxicology and Chemistry 10, 1449–1458. doi:10.1002/etc.5620101110 Search hit Callinan, R. B., Sammut, J., and Fraser, G. C. (2005). Dermatitis, branchitis and mortality in empire gudgeon Hypseleotris compressa exposed naturally to runoff Relevant Irrelevant from acid sulfate soils. Diseases of Aquatic Organisms 63, 247–253. doi:10.3354/dao063247 Search hit Carini, G., and Hughes, J. M. (2004). Population structure of Macrobrachium australiense (Decapoda: Palaemonidae) in Western Queensland, Australia: the role of Irrelevant contemporary and historical processes. Heredity 93, 350–363. doi:10.1038/sj.hdy.6800510 Search hit Piorski, N. M., Sanches, A., Carvalho-Costa, L. F., Hatanaka, T., Carrillo-Avila, M., Freitas, P. D., and Galetti, P. M. Jr (2008). Contribution of conservation Irrelevant genetics in assessing neotropical freshwater fish biodiversity/Contribuicao da genetica da conservacao para o conhecimento da biodiversidade dos peixes de agua doce neotropicais. Brazilian Journal of Biology 68, 1039. doi:10.1590/S1519-69842008000500011 Search hit Cartwright, I., and Gilfedder, B. (2015). 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Isolation and PCR-multiplex genotyping of 18 novel microsatellite markers for the threatened Irrelevant southern pygmy perch (Nannoperca australis). Conservation Genetics Resources 4, 15–17. doi:10.1007/s12686-011-9462-z Search hit Cascio, T., and Gasker, J. (2001). Everyone has a shining side: computer-mediated mentoring in social work education. Journal of Social Work Education 37, 283. Irrelevant doi:10.1080/10437797.2001.10779054 Search hit Cashner, R. C., Hawkes, G. P., Gartside, D. F., and Marsh-Matthews, E. (1999). Fishes of the Nymboida, Mann and Orara Rivers of the Clarence River drainage, Relevant Irrelevant New South Wales, Australia. Proceedings of the Linnean Society of New South Wales 1999, 89–100. Search hit Chakona, A., and Swartz, E. R. (2012). Contrasting habitat associations of imperilled endemic stream fishes from a global biodiversity hot spot. BMC Ecology 12, Irrelevant 19. doi:10.1186/1472-6785-12-19 Search hit Chakona, G., Swartz, E. R., and Chakona, A. (2015). 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Source Reference Relevance Relevance (based on title (after reading and abstract) full text) Pygmy perch & carp gudgeons Search hit Chikhi, L., Sousa, V. C., Luisi, P., Goossens, B., and Beaumont, M. A. (2010). The confounding effects of population structure, genetic diversity and the sampling Irrelevant scheme on the detection and quantification of population size changes. Genetics 186, 983–995. doi:10.1534/genetics.110.118661 Search hit Choe, K. P., and Evans, D. H. (2005) The multifunctional fish gill: dominant site of gas exchange, osmoregulation, acid-base regulation, and excretion of Irrelevant nitrogenous waste. Available at http://go.galegroup.com/ps/i.do?id=GALE%7CA128602937&v=2.1&u=unimelb&it=r&p=EAIM&sw=w Search hit Choongo, K., Hang’ombe, B., Samui, K. L., Syachaba, M., Phiri, H., Maguswi, C., Muyangaali, K., Bwalya, G., and Mataa, L. (2009). Environmental and climatic Irrelevant factors associated with Epizootic Ulcerative Syndrome (EUS) in fish from the Zambezi Floodplains, Zambia. Bulletin of Environmental Contamination and Toxicology 83, 474–478. doi:10.1007/s00128-009-9799-0 Search hit Ryan, M., McCormack, J., and Cleak, H. (2006). Student performance in field education placements: the findings of a 6-year Australian study of admissions data. Irrelevant Journal of Social Work Education 42, 67. doi:10.5175/JSWE.2006.200303106 Search hit Close, P. G., Pusey, B. J., and Arthington, A. H. (2005). Larval description of the sympatric species, Craterocephalus stercusmuscarum stercusmuscarum (Pisces : Relevant Irrelevant Atherinidae) and Mogurnda adspersa (Pisces : Eleotridae) from tropical streams of north-east Queensland, Australia. Journal of Fish Biology 66, 668–684. doi:10.1111/j.0022-1112.2005.00632.x Search hit Weiss, I., Gal, J., and Cnaan, R. A. (2005). Does social work education have an impact on social policy preferences? A three-cohort study. Journal of Social Work Irrelevant Education 41, 29. doi:10.5175/JSWE.2005.200202148 Search hit Kindle, P. A., and Colby, I. (2008). School selection preferences of public and private university MSW students: a retrospective study. Journal of Social Work Irrelevant Education 44, 97. doi:10.5175/JSWE.2008.200500599 Search hit Cole, T. L., Hammer, M. P., Unmack, P. J., Teske, P. R., Brauer, C. J., Adams, M., and Beheregaray, L. B. (2016). Range-wide fragmentation in a threatened fish Irrelevant associated with post-European settlement modification in the Murray–Darling Basin, Australia. Conservation Genetics 17(6), 1377–1391. doi:10.1007/s10592- 016-0868-8 Search hit Tam, D. M. Y., and Coleman, H. (2009). Construction and validation of a professional suitability scale for social work practice. 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(1993) Distribution, ecology and conservation of the honey blue-eye, Pseudomugil mellis, in south-eastern Queensland. Final Relevant Relevant report to the Australian Nature Conservation Agency Endangered Species Program. Vol I. Centre for Catchment and In-stream Research, Griffith University, Nathan Citation trail Arthington, A. H., and Lloyd, L. N. (1989) Introduced poeciliids in Australia and New Zealand. In ‘Ecology and Evolution of Livebearing Fishes (Poeciliidae)’. Relevant Irrelevant (Eds G. K. Meffe and F. F. Snelson.) pp. 333–348. (Prentice Hall: Englewood Cliffs, NJ, USA.) Citation trail Backhouse, G. N., and Gooley, G. J. (1979). The fish fauna of Bridgewater lakes, Portland, Victoria. Victorian Naturalist 96, 232–238. Relevant Irrelevant Citation trail Bayly, I. A. E., Ebsworth, E. P., and Wan, H. F. (1975). Studies on the lakes of Fraser Island, Queensland. Australian Journal of Marine and Freshwater Research Relevant Irrelevant 26(1), 1–13. doi:10.1071/MF9750001 Citation trail Beesley, L., Price, A., King, A., Gawne, B., Nielsen, D., Koehn, J., Meredith, S., Vilizzi, L., and Hladyz, S. (2011) Watering floodplain wetlands in the Murray– Relevant Relevant Darling Basin for native fish. National Water Commission, Canberra Citation trail Blewett, C. F. (1929). Habits of some Australian freshwater fishes. South Australian Naturalist 10, 21–29. Relevant Relevant Citation trail Cadwallader, P. L., and Backhouse, G. N. (1983). Family Eleoridae: Gudgeons. In ‘A Guide to the Freshwater Fish of Victoria’. (Government Printer: Melbourne, Relevant Irrelevant Vic., Australia) Citation trail Cadwallader, P. L., and Backhouse, G. N. (1983). Family Kuhliidae: Pigmy Perches. In ‘A Guide to the Freshwater Fish of Victoria’. (Government Printer: Relevant Irrelevant Melbourne, Vic., Australia) Citation trail Costelloe, J. F., Reid, J. R. W., Pritchard, J. C., Puckridge, J. T., Bailey, V. E., and Hudson, P. J. (2010). Are alien fish disadvantaged by extremely variable flow Relevant Relevant regimes in arid-zone rivers? Marine and Freshwater Research 61, 857–863. doi:10.1071/MF09090 Citation trail Gale, A. (1914). Notes on the breeding habits of the purple striped gudgeon, Kreffitus adspersa. Australian Zoologist 1(1), 25–26. Relevant Relevant Citation trail Geddes, P. (1988) Survival and growth of larval and juvenile native fish: the importance of the floodplain. In ‘Proceedings of the Workshop on Native Fish Relevant Irrelevant Management’. (Ed. B. Lawrence.) pp. 101–115. (Murray–Darling Basin Commission: Canberra, ACT, Australia.) Citation trail Gehrke, P. C. (1997) Differences in composition and structure of fish communities associate with flow regulation in New South Wales rivers. In ‘Fish and Rivers in Relevant Irrelevant Stress: the New South Wales Rivers Survey’. (Eds J. H. Harris and P. C. Gehrke.) Pp 169-223. (New South Wales Fisheries Office of Conservation and Cooperative Research Centre for Freshwater Ecology, Canberra, ACT, Australia.) Citation trail Gehrke, P. C., Gilligan, D. M., and Barwick, M. (2001) Fish communities and migration in the Shoalhaven River – Before construction of a fishway. Final report to Relevant Irrelevant Sydney Catchment Authority. NSW Fisheries Final Report Series number 26. Citation trail Gehrke, P. C., Gilligan, D. M., and Barwick, M. (2002). Changes in fish communities of the Shoalhaven River 20 years after construction of Tallowa Dam, Relevant Irrelevant Australia. River Research and Applications 18(3), 265–286. doi:10.1002/rra.669 Citation trail Hamlyn-Harris, R. (1931). A further contribution to the breeding habits of Mogurnda (Mogurnda) adspersus Castelnau, the trout gudgeon. Australian Zoologist 7(1), Relevant Irrelevant 55–58. Citation trail Hansen, B. (1988). The purple spotted gudgeon – Mogurnda adspersa. Fishes of Sahul 5(1), 200–202. Relevant Irrelevant Citation trail Hoese, D. F., and Allen, G. R. (1983). A review of the gudgeon genus Hypseleotris (Pisces: Eleotridae) of Western Australia, with descriptions of three new species. Relevant Irrelevant Records of the Western Australian Museum 10(3), 243–261. Citation trail Hortle, K. 1979. The effects of river improvement (channelization) on fish and aquatic invertebrates in the Bunyip River, Victoria. B.Sc.(Hons) thesis, Zoology Relevant Irrelevant Department, Monash University, Clayton, Vic., Australia. Citation trail Humphries, P., King, A. J., and Koehn, J. D. (1999). Fish, flows and flood plains: links between freshwater fishes and their environment in the Murray–Darling Relevant Irrelevant River system, Australia. Environmental Biology of Fishes 56, 129–151. doi:10.1023/A:1007536009916 Citation trail Humphries, P. 1983. Aspects of the biology of the dwarf galaxiid, Galaxiella pusilla (Mack) (Salmoniformes : Galaxiidae). B.Sc.(Hons) thesis, Zoology Relevant Irrelevant Department, Monash University, Clayton, Vic., Australia. Citation trail Knight, J. T. (2000) Distribution, population structure and habitat preferences of the Oxleyan pygmy perch Nannoperca oxleyana (Whitley 1940) near Evans Head, Relevant Irrelevant north-eastern New South Wales. Honours thesis, Southern Cross University, Lismore, NSW, Australia.

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Source Reference Relevance Relevance (based on title (after reading and abstract) full text) Pygmy perch & carp gudgeons Citation trail Knight, J. T. (1999) Density Dependent Interference Competition on the Australian Native Fish Pseudomugil Signifer (KNER, 1865) by the Introduced Poeciliid Relevant Irrelevant Gambusia Holbrooki (GIRARD, 1859). Unpublished Integrated Project, School of Resource Science and Management, Southern Cross University, Lismore, NSW, Australia Citation trail Koehn, J. D., and O’Connor, W. G. (1990) Biological information for management of native freshwater fish in Victoria. Department of Conservation and Relevant Irrelevant Environment. Citation trail Kuiter, R. H., and Allen, G. R. (1986). A synopsis of the Australian pygmy perches (Percichthyidae) with the description of a new species. Revue Francaise Relevant Irrelevant Aquariologie 12(4), 109–116. Citation trail Kuiter, R. H., Humprhries, P. A., and Arthington, A. H. (1996) Family Nannopercidae. Pygmy Perches. In ‘Freshwater Fishes of South-Eastern Australia’. (Ed. R. Relevant Irrelevant M. McDowall.) pp. 168–175. (Reed: Sydney, NSW, Australia.) Citation trail Lake, J. S. (1967). Rearing experiments with five species of Australian freshwater fishes I. Inducement to spawning. Australian Journal of Marine and Freshwater Relevant Relevant Research 18, 137–153. doi:10.1071/MF9670137 Citation trail Lake, J. S. (1967). Rearing experiments with five species of Australian freshwater fishes II. Morphogenesis and ontogeny. Australian Journal of Marine and Relevant Relevant Freshwater Research 18, 155–173. doi:10.1071/MF9670155 Citation trail Larson, H. K., and Hoese, D. F. (1996) Family Gobiidae, subfamilies Eleotridinae and Butinae. Gudgeons. In In ‘Freshwater Fishes of South-Eastern Australia’. (Ed. Relevant Irrelevant R. M. McDowall.) pp. 200–219. (Reed: Sydney, NSW, Australia.) Citation trail Legget, R. (1990). A fish in danger – Nannoperca oxleyana. Fishes of Sahul 6(1), 247–249. Relevant Relevant Citation trail Llewellyn LC (1971) Breeding studies on the freshwater forage fish of the Murray–Darling river system. The Fisherman, 1-12 June. Relevant Irrelevant Citation trail Llewellyn, L. C. 1983. The distribution of fish in New South Wales. Australian Society of Limnology Special Publication number 7. Relevant Irrelevant Citation trail Lloyd, L. N. (1984). Exotic fish—useful additions or “animal weeds”. Fishes of Sahul 1(3), 31–34, 39–42. Relevant Irrelevant Citation trail Lloyd, L. N. (1987). Ecology and distribution of the small native fish of the lower River Murray, South Australia and their interactions with the exotic mosquitofish, Relevant Relevant Gambusia affinis. M.Sc. thesis, Department of Zoology, University of Adelaide, Adelaide, South Australia. Citation trail Lloyd, L. N., and Walker, K. F. (1986). Distribution and conservation status of small freshwater River Murray, South Australia. Transactions of the Royal Society of Relevant Irrelevant South Africa 110, 49–57. Citation trail Mackay, N. J. (1973). The reproductive cycle of the firetail gudgeon, Hypseleotris galii I. Seasonal histological changes in the ovary. Australian Journal of Zoology Relevant Irrelevant 21, 53–66. doi:10.1071/ZO9730053 Citation trail Mackay, N. J. (1973). The reproductive cycle of the firetail gudgeon, Hypseleotris galii II. Seasonal histological changes in the testes. Australian Journal of Zoology Relevant Irrelevant 21, 67–74. doi:10.1071/ZO9730067 Citation trail Marsden, T. J., Gehrke, P. C., and Harris, J. H. (1997) Effects of Tallowa Dam on fish communities in the Shoalhaven River System. In ‘Second National Fishway Relevant Irrelevant Technical Workshop Proceedings’. (Eds A. P. Berghuis, P. E. Long, and I. G. Stuart.) pp 71–91. (Queensland Department of Primary Industries.) Citation trail Mitchell, P. A. (1976) A study of aspects of the behaviour and breeding biology of the southern pigmy perch Nannoperca australis australis (Gunther) (Teleostei, Relevant Relevant Nannopercidae). B.Sc. (Hons) Thesis, Zoology Department, University of Melbourne: Melbourne Citation trail Sanger, A. C. 1978. Aspects of the Ecology and Evolution of the Pigmy Perches (Teleostei : Kuhliidae). B.Sc.(Hons) thesis, Zoology Department, University of Relevant Irrelevant Melbourne, Parkville, Victoria. Citation trail Scott, T. D., Glover, G. J. M., and Southcott, R. V. 1980. ‘The Marine and Freshwater Fishes of South Australia’, reprinted 2nd edn). (Government Printer: South Relevant Irrelevant Australia.) Citation trail Shipway, B. (1949). Notes on the natural history of the pygmy perch (Nannoperca vittata). Western Australian Naturalist (Perth) 2, 1–9. Relevant Relevant Citation trail Stoffels, R. (1998) Habitat use of gudgeons in floodplain billabong: the role of their interaction with perch and mosquitofish. Unpublished Honours Thesis. Relevant Relevant Department of Environmental Management and Ecology. LaTrobe University. Citation trail Unmack, P. (1992). Victorian pygmy perches. Fishes of Sahul 7(3), 321–323. Relevant Irrelevant Citation trail Wager, R. (1992). The oxleyan pygmy perch: maintaining breeding populations. Fishes of Sahul 7(2), 310–312. Relevant Irrelevant

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Table S1. (Cont.)

Source Reference Relevance Relevance (after (based on reading full text) title and abstract) Blackfish & flat-headed gudgeon Search hit Copp, G. H. (2008). Putting multi-dimensionality back into niche: diel vs. day-only niche breadth separation in stream fishes. Fundamental and Applied Limnology Irrelevant 170, 273–280. doi:10.1127/1863-9135/2008/0170-0273 Search hit Anon. (2012). Aquatic ecology; research data from Griffith University update understanding of aquatic ecology. Ecology, Environmental Conservation 429. Irrelevant Search hit Anon. (2012). Ecology Research; Research Reports on Ecology Research from University of Ballarat Provide New Insights. Engineering Business Journal 1571. Irrelevant Search hit Anonymous (2008). Ecology; Research from W.M. Koster and co-authors yields new data on ecology. Ecology. Environment & Conservation Business 175. Irrelevant Search hit Anonymous (2009). Aquatic ecology; reports outline aquatic ecology study findings from B. Ebner and colleagues. Ecology, Environmental Conservation 321. Irrelevant Search hit Anonymous (2009). Marine biology; new findings from University of Canberra describe advances in marine biology. Ecology, Environmental Conservation 348. Irrelevant Search hit Anonymous (2010). Ecology; reports from Deakin University highlight recent research in ecology. Energy & Ecology Business 1145. Irrelevant Search hit Anonymous (2011). Bayesian analysis; research from Monash University provides new data about Bayesian analysis. Ecology, Environmental Conservation 666. Irrelevant Search hit Anonymous (2010). Drift and lure fish at Eildon. The Weekly Times, Melbourne, Vic., Australia, Melbourne, Vic. Irrelevant Search hit Anonymous (2010). Good cod, why is that here? The Weekly Times, Melbourne, Vic., Australia, Melbourne, Vic. Irrelevant Search hit Anonymous (2010). Slow start to season kick-off. The Weekly Times, Melbourne, Vic., Australia, Melbourne, Vic. Irrelevant Search hit Anonymous (2010). The fishing’s just Fyans. The Weekly Times, Melbourne, Vic., Australia, Melbourne, Vic. Irrelevant Search hit Anonymous (2010). Trout boost for the west. The Weekly Times, Melbourne, Vic., Australia, Melbourne, Vic. Irrelevant Search hit Anonymous (2010). Yellowbelly outlook bright. The Weekly Times, Melbourne, Vic., Australia, Melbourne, Vic. Irrelevant Search hit Ashburner, L. D., and Ehl, A. S. (1973) Chilodonella cyprini (Moroff), a parasite of freshwater fish and its treatment. Available at Irrelevant http://search.proquest.com.ezp.lib.unimelb.edu.au/docview/17795818?accountid=12372 Search hit Atkins, L. (1979). Observations on the glochidial stage of the freshwater mussel Hyridella (Hyridella) drapeta (Iredale) (Mollusca: Pelecypoda). Australian Journal Irrelevant of Marine and Freshwater Research 30(3), 411–416. Search hit Balcombe, S. R., Sheldon, F., Capon, S. J., Bond, N. R., Hadwen, W. L., Marsh, N., and Bernays, S. J. (2011). Climate-change threats to native fish in degraded Relevant Irrelevant rivers and floodplains of the Murray–Darling Basin, Australia. Marine and Freshwater Research 62, 1099–1114. doi:10.1071/MF11059 Search hit Baumgartner, L. J. (2007). Diet and feeding habits of predatory fishes upstream and downstream of a low-level weir. Journal of Fish Biology 70, 879–894. Irrelevant doi:10.1111/j.1095-8649.2007.01352.x Search hit Baumgartner, L. J., Stuart, I. G., and Zampatti, B. P. (2008). Determining diel variation in fish assemblages downstream of three weirs in a regulated lowland river. Relevant Irrelevant Journal of Fish Biology 72, 218–232. doi:10.1111/j.1095-8649.2007.01696.x Search hit Beumer, J. P. (1984). The Lerderderg river fish ladder. Aqua 23, 16–17. Relevant Irrelevant Search hit Bond, N. R., and Lake, P. S. (2003). Characterizing fish-habitat associations in streams as the first step in ecological restoration. Austral Ecology 28, 611–621. Relevant Irrelevant doi:10.1046/j.1442-9993.2003.t01-1-01317.x Search hit Bond, N. R., and Lake, P. S. (2005). Ecological restoration and large-scale ecological disturbance: The effects of drought on the response by fish to a habitat Relevant Irrelevant restoration experiment. Restoration Ecology 13, 39–48. doi:10.1111/j.1526-100X.2005.00006.x Search hit Broadhurst, B. T., Ebner, B. C., and Clear, R. C. (2009). Radio-tagging flexible-bodied fish: temporary confinement enhances radio-tag retention. Marine and Irrelevant Freshwater Research 60, 356–360. doi:10.1071/MF08141 Search hit Broadhurst, B. T., Dyer, J. G., Ebner, B. C., Thiem, J. D., and Pridmore, P. A. (2011). Response of two-spined blackfish Gadopsis bispinosus to short-term flow Relevant Irrelevant fluctuations in an upland Australian stream. Hydrobiologia 673, 63–77. doi:10.1007/s10750-011-0750-0 Search hit Broadhurst, B. T., Lintermans, M., Thiem, J. D., Ebner, B. C., Wright, D. W., and Clear, R. C. (2012). Spatial ecology and habitat use of two-spined blackfish Relevant Irrelevant Gadopsis bispinosus in an upland reservoir. Aquatic Ecology 46, 297–309. doi:10.1007/s10452-012-9401-4 Search hit Bycroft, B. M., Coller, B. A. W., Deacon, G. B., Coleman, D. J., and Lake, P. S. (1982). Mercury contamination of the Lerderderg River, Victoria, Australia, from an Relevant Irrelevant abandoned gold field. Environmental Pollution – A 28(2), 135–147. doi:10.1016/0143-1471(82)90099-X Search hit Chapman, A., Hobbs, R. P., Morgan, D. L., and Gill, H. S. (2006). Helminth parasitism of Galaxias maculatus (Jenyns 1842) in southwestern Australia. Ecology Irrelevant Freshwater Fish 15, 559–564. doi:10.1111/j.1600-0633.2006.00198.x Search hit Cooper, S. (2010). Cod jackpot tops 16 kg. The Weekly Times, Melbourne, Vic., Australia, Melbourne, Vic. Irrelevant Search hit Cooper, S. (2010). Mountains of trout on offer. The Weekly Times, Melbourne, Vic., Australia, Melbourne, Vic. Irrelevant Search hit Cooper, S. (2010). Tiny natives on radar. The Weekly Times, Melbourne, Vic., Australia, Melbourne, Vic. Irrelevant

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Source Reference Relevance Relevance (after (based on reading full text) title and abstract) Blackfish & flat-headed gudgeon Search hit Cooper, S. (2010). Trout is tops in fishing mixed bag. The Weekly Times, Melbourne, Vic., Australia, Melbourne, Vic. Irrelevant Search hit Cooper, S. (2011). Blackwater blues for Murray anglers. The Weekly Times, Melbourne, Vic., Australia, Melbourne, Vic. Irrelevant Search hit Cooper, S. (2011) Plenty biting in the lakes. The Weekly Times, Melbourne, Vic., Australia, Melbourne, Vic. Irrelevant Search hit Cooper, S. (2011) Wide choice for salt and freshwater fishers. The Weekly Times, Melbourne, Vic., Australia, Melbourne, Vic. Irrelevant Search hit Cooper, S. (2012) Yellowbelly running in the Murray. The Weekly Times, Melbourne, Vic., Australia, Melbourne, Vic. Irrelevant Search hit Cooper, S. (2013) Hefty tuna to 43 kg at Portland. The Weekly Times, Melbourne, Vic., Australia, Melbourne, Vic. Irrelevant Search hit Davies, P. E. (1989). Relationships between habitat characteristics and population abundance for brown trout, Salmo trutta L, and blackfish, Gadopsis marmoratus Relevant Irrelevant Rich, in Tasmanian streams. Australian Journal of Marine and Freshwater Research 40, 341–359. Search hit Dobson, G., and Baldwin, J. (1978). Intra-erythrocytic modulation of hemoglobin oxygen-affinity in fresh-water blackfish Gadopsis marmoratus. Proceedings of the Irrelevant Australian Biochemical Society 11, 30–30. Search hit Dobson, G. P., and Baldwin, J. (1982). Regulation of blood oxygen affinity in the Australian blackfish Gadopsis marmoratus I. Correlations between oxygen-binding Relevant Irrelevant properties, habitat and swimming behaviour. The Journal of Experimental Biology 99, 223–243. Search hit Dobson, G. P., and Baldwin, J. (1982). Regulation of blood oxygen affinity in the Australian blackfish Gadopsis marmoratus II. Thermal acclimation. The Journal of Irrelevant Experimental Biology 99, 245–254. Search hit Doeg, T. J., and Koehn, J. D. (1994). Effects of draining and desilting a small weir on downstream fish and macroinvertebrates. Regulated Rivers: Research and Relevant Irrelevant Management 9, 263–277. doi:10.1002/rrr.3450090407 Search hit Donald, J. A. (1987). Comparative study of the adrenergic innervation of the teleost gill. Journal of Morphology 193, 63–73. doi:10.1002/jmor.1051930107 Irrelevant Search hit Droz, M., Staub, E., and Steiner, P. A. (2006) Decreasing angling catch and fish distribution patterns indicate reduced ecological integrity in Swiss rivers. Irrelevant Schweizerbartsche Verlagsbuchhandlung, Stuttgart (Germany) Search hit Ebner, B., Clear, R., Godschalx, S., and Beitzel, M. (2009). In-stream behaviour of threatened fishes and their food organisms based on remote video monitoring. Relevant Irrelevant Aquatic Ecology 43, 569–576. doi:10.1007/s10452-008-9192-9 Search hit Ebner, B. C., Thiem, J. D., Gilligan, D. M., Lintermans, M., Wooden, I. J., and Linke, S. (2008). Estimating species richness and catch per unit effort from boat Relevant Irrelevant electro-fishing in a lowland river in temperate Australia. Australian Journal of Ecology 33, 891–901. doi:10.1111/j.1442-9993.2008.01862.x Search hit Fielder, D. S., Hay, A. C., and Trnski, T. (2005). Larval development of estuary perch (Macquaria colonorum) and Australian bass (M. novemaculeata) (Perciformes: Irrelevant Percichthyidae), and comments on their life history. Fishery Bulletin 103, 183. Search hit Gibson, D. I., Bray, R. A., and Langdon, J. S. (1990). Dactylostomum cribbi n. sp., a new opecoeline digenean from the Australian freshwater fish Gadopsis Irrelevant marmoratus Richardson. Systematic Parasitology 17, 75–80. doi:10.1007/BF00009793 Search hit Gillespie, G. R. (2001). The role of introduced trout in the decline of the spotted tree frog (Litoria spenceri) in south-eastern Australia. Biological Conservation 100, Irrelevant 187–198. doi:10.1016/S0006-3207(01)00021-0 Search hit Giraud, A. S., and Yeomans, N. D. (1982). Cell types of the gastric mucosa of a teleost, the river blackfish, Gadopsis marmoratus. Australian Journal of Marine and Irrelevant Freshwater Research 33, 1103–1108. doi:10.1071/MF9821103 Search hit Giraud, A. S., and Yeomans, N. D. (1982). Comparative distribution of pepsinogen in the chordate gastric mucosa from representatives of five classes. Comparative Irrelevant Biochemistry and Physiology – B. Comparative Biochemistry 72, 145–147. doi:10.1016/0305-0491(82)90024-4 Search hit Goerner, M. (2006) Influence of cormorand (Phalacrocorax carbo) and other piscivorous birds on fish fauna of running waters in Middle Europe. Available at Irrelevant http://search.proquest.com.ezp.lib.unimelb.edu.au/docview/17277915?accountid=12372 Search hit Griffiths, S. P., and West, R. J. (1999). Preliminary assessment of shallow water fish in three small intermittently open estuaries in southeastern Australia. Fisheries Relevant Irrelevant Management and Ecology 6, 311–321. doi:10.1111/j.1365-2400.1999.tb00082.x Search hit Growns, I. (2008). The influence of changes to river hydrology on freshwater fish in regulated rivers of the Murray-Darling basin. Hydrobiologia 596, 203–211. Relevant Irrelevant doi:10.1007/s10750-007-9097-y Search hit Growns, I., Gehrke, P. C., Astles, K. L., and Pollard, D. A. (2003). A comparison of fish assemblages associated with different riparian vegetation types in the Relevant Irrelevant Hawkesbury-Nepean River system. Fisheries Management and Ecology 10, 209–220. doi:10.1046/j.1365-2400.2003.00337.x Search hit Hammer, M. P., and Walker, K. F. (2004). A catalogue of South Australian freshwater fishes, including new records, range extensions and translocations. Irrelevant Transactions of the Royal Society of South Australia 128, 85–97. Search hit Harris, J. H., and Silveira, R. (1999). Large-scale assessments of river health using an Index of Biotic Integrity with low-diversity fish communities. Freshwater Relevant Irrelevant Biology 41, 235–252. doi:10.1046/j.1365-2427.1999.00428.x

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Source Reference Relevance Relevance (after (based on reading full text) title and abstract) Blackfish & flat-headed gudgeon Search hit Hermoso, V., Linke, S., and Prenda, J. (2009). Identifying priority sites for the conservation of freshwater fish biodiversity in a Mediterranean basin with a high Irrelevant degree of threatened endemics. Hydrobiologia 623, 127–140. doi:10.1007/s10750-008-9653-0 Search hit Howson, T. J., Robson, B. J., and Mitchell, B. D. (2010). Patch-specific spawning is linked to restoration of a sediment-disturbed lowland river, south-eastern Relevant Irrelevant Australia. Ecological Engineering 36, 920–929. doi:10.1016/j.ecoleng.2010.04.007 Search hit Howson, T. J., Robson, B. J., Matthews, T. G., and Mitchell, B. D. (2012). Size and quantity of woody debris affects fish assemblages in a sediment-disturbed Relevant Irrelevant lowland river. Ecological Engineering 40, 144–152. doi:10.1016/j.ecoleng.2011.12.007 Search hit Hume, D. J. (1979) Census of fish in the Tullaroop Creek System, Victoria Relevant Irrelevant Search hit Humphries, P., Serafini, L. G., and King, A. J. (2002). River regulation and fish larvae: Variation through space and time. Freshwater Biology 47, 1307–1331. Relevant Relevant doi:10.1046/j.1365-2427.2002.00871.x Search hit Jackson, P. D. (1978). Benthic invertebrate fauna and feeding relationships of brown trout, Salmo trutta Linnaeus, and river blackfish, Gadopsis marmoratus Relevant Relevant Richardson, in the Aberfeldy River, Victoria. Australian Journal of Marine and Freshwater Research 29, 725–742. doi:10.1071/MF9780725 Search hit Jackson, P. D. (1978). Spawning and early development of the river blackfish, Gadopsis marmoratus Richardson (Gadopsiformes: Gadopsidae), in the McKenzie Relevant Irrelevant River, Victoria. Australian Journal of Marine and Freshwater Research 29, 293–298. doi:10.1071/MF9780293 Search hit Jaramillo, D., Tweedie, A., Becker, J. A., Hyatt, A., Crameri, S., and Whittington, R. J. (2012). A validated quantitative polymerase chain reaction assay for the Irrelevant detection of ranaviruses (Family Iridoviridae) in fish tissue and cell cultures, using EHNV as a model. Aquaculture 356-357, 186–192. doi:10.1016/j.aquaculture.2012.05.017 Search hit Jasonsmith, J. F., Maher, W., Roach, A. C., and Krikowa, F. (2008). Selenium bioaccumulation and biomagnification in Lake Wallace, New South Wales, Australia. Relevant Irrelevant Marine and Freshwater Research 59, 1048–1060. doi:10.1071/MF08197 Search hit Jenkins, K. M., Kingsford, R. T., Closs, G. P., Wolfenden, B. J., Matthaei, C. D., and Hay, S. E. (2011). Climate change and freshwater ecosystems in Oceania: an Irrelevant assessment of vulnerability and adaptation opportunities. Pacific Conservation Biology 17, 201–219. doi:10.1071/PC110201 Search hit Jerry, D. R., Elphinstone, M. S., and Baverstock, P. R. (2001). Phylogenetic relationships of Australian members of the family Percichthyidae inferred from Irrelevant mitochondrial 12S rRNA sequence data. Molecular Phylogenetics and Evolution 18, 335–347. doi:10.1006/mpev.2000.0871 Search hit Kazlauskiene, N., Kesminas, V., Marciulioniene, D., and Montvydiene, D. (2011). Makrofitu ir zuvu rusine kaita druksiu ezere--ignalinos atomines elektrines Irrelevant ausinimo baseine (1988–2008). Journal of Environmental Engineering and Landscape Management 19, 21. [Changes in macrophytes and fish communities in the cooler of Ignalina Nuclear Power Plant (1988–2008)]. Search hit Khan, M. T., Khan, T. A., and Wilson, M. E. (2004). Habitat use and movement of river blackfish (Gadopsis marmoratus R.) in a highly modified Victorian stream, Relevant Irrelevant Australia. Ecology Freshwater Fish 13, 285–293. doi:10.1111/j.1600-0633.2004.00068.x Search hit Khan, M. T., Khan, T. A., et al. 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Relevant Irrelevant Citation Trail Lintermans, M. (1998) The ecology of the two-spined blackfish Gadopsis bispinosus (Pisces: Gadopsidae). M. Sc., Australian National University. Relevant Relevant Citation Trail Llewellyn, L. C. (1983). The distribution of fish in New South Wales. Special Publication number 7, Australian Society of Limnology. Relevant Irrelevant Citation trail Lloyd, L. N. (1987). Ecology and distribution of the small native fish of the lower River Murray, South Australia and their interactions with the exotic mosquitofish, Relevant Relevant Gambusia affinis. M.Sc. thesis, Department of Zoology, University of Adelaide, Adelaide, South Australia. Citation Trail Sanger, A. C. (1990). Life history of Gadopsis bispinosus in King Parrot Creek, Victoria. Proceedings of the Royal Society of Victoria 102, 89–96. Relevant Relevant Citation Trail Sanger, A. C. 1986. The evolution and ecology of the Gadopsis marmoratus complex. Ph.D. thesis, Zoology Department, University of Melbourne, Parkville, Relevant Relevant Victoria. Citation trail Scott, T. D., Glover, G. J. M., and Southcott, R. V. 1980. ’The Marine and Freshwater Fishes of South Australia’, reprinted 2nd edn. (Government Printer: South Relevant Irrelevant Australia.) Page 26 of 30 Marine and Freshwater Research © CSIRO 2018 https://doi.org/10.1071/MF17241

Source Reference Relevance Relevance (after (based on reading full text) title and abstract) Blackfish & flat-headed gudgeon Citation Trail Tunbridge, B. R. 1988. Environmental flows and fish populations of waters in the south-western region of Victoria. Arthur Rylah Institute for Environmental Relevant Irrelevant Research, Fisheries Division, Victoria. Citation trail Westergaard, S., and Ye, Q. (2010) A captive spawning and rearing trial of river blackfish (Gadopsis marmoratus): efforts towards savings local genetic assets with Relevant Relevant recognised conservation significance from the South Australian Murray–Darling Basin. Report to Department of Environment and Heritage. SARDI Publication Number F2010/000183-1, SARDI Research Report Series number 471, South Australian Research and Development Institute (Aquatic Sciences), Adelaide, SA, Australia. ASame data as Vilizzi (2012) BSame data as Jackson (1978)

Table S2. Detailed results for each of the two rapid evidence assessments Hypothesis Evidence Reference Cause Effect Life stage Species Support Refute Summary item Suport Refute Overall Veredict Pigmy Perch 1. Spring water 1 Mackay Water temperature Spawning success reproduction Hypseleotris galii 7 31 21 10 Inconsistent temperatures above (1974) evidence 21 C will result in 2 Llewelyn Water temperature Spawning success reproduction Mogurnda adspersa 3 greater spawning (2006) success 3 King et al Water temperature Spawning success reproduction Hypseleotris spp. 3 (2003) 4 Stuart et al Water temperature Spawning success reproduction Hypseleotris spp. 1 (2008) 5 Llewelyn Water temperature Spawning success reproduction Nannoperca australis 3 (1974) 6 Pen & Potter Water temperature Spawning success reproduction Nannoperca vittata 3 (1991) 7 Humphries Water temperature Spawning success reproduction Nannoperca australis 3 (1995) 8 Vilizzi (2012) Water temperature Spawning success reproduction Hypseleotris spp. 7 9 Knight et al Water temperature Spawning success reproduction Nannoperca oxleyana 5 (2007) 10 Lake (1967) Water temperature Spawning success reproduction Hypseleotris klunzingeri 3 11 Blewett Water temperature Spawning success reproduction Mogurnda adspersa 1 (1929) 12 Mitchell Water temperature Spawning success reproduction Nannoperca australis 3 (1976) 13 Mitchell Water temperature Spawning success reproduction Nannoperca australis 1 (1976) 14 Arthington & Water temperature Spawning success reproduction Nannoperca oxleyana, 3 Marshall Hypseleotris compressa, (1993) Hypseleotris galii 15 Arthington Water temperature Spawning success reproduction Nannoperca oxleyana 3 (1996)

Hypothesis Evidence Reference Cause Effect Life stage Species Support Refute Summary item Suport Refute Overall Veredict Pigmy Perch 16 Humphries Water temperature Spawning success reproduction Hypseleotris spp. 3 (2002) 2. Spring water 17 Llewelyn Water temperature Fish mortality egg Nannoperca australis 3 5 14 9 Insufficient temperatures above (1974) evidence 21 C will increase 18 Lake (1967) Water temperature Fish mortality egg, Hylseleotris klunzingeri 3 survival of eggs prolarvae and larvae 19 Blewett Water temperature Fish mortality egg Mogurnda adspersa 4 (1929) 20 Gale (1914) Water temperature Fish mortality egg Mogurnda adspersa 1 21 Mitchell Water temperature Fish mortality egg Nannoperca australis 3 (1976) 22 Shipway Water temperature Fish mortality egg Nannoperca vittata 5 (1949) 3. The absence of 23 McMaster & Water volume Fish abundance eggs and Hypseleotris klunzingeri 1 13 0 13 Insufficient spring high flows Bond larvae evidence during spawning (2008) will increase 24 King et al Water volume Fish reproduction eggs and Hypseleotris spp. 3 survival of eggs (2003) larvae and larvae 25 Beesley et al Flow seasonality Fish abundance larvae Hypseleotris sp. 9 (2011) 4. The presence of 26 Ho et al Water volume Fish abundance YOY Hypseleotris sp. 3 27 3 24 Support for late-spring high (2013) hypothesis flows after 27 Beesley et al Flow duration Fish abundance juvenile Hypseleotris sp. 9 spawning will (2012) increase survival of 28 Tonkin et al Flow duration Fish abundance YOY Nannoperca australis 3 juveniles and adults (2008) 29 Beesley et al Flow seasonality Fish abundance juvenile Hypseleotris sp. 9 (2011) 30 Bice 2014 Water volume Fish abundance adult Hypseleotris sp. 3 31 Costelloe et al Water volume Fish abundance juvenile Hypseleotris sp. 3 (2010) 5. An increase in 32 Blewett Water temperature Fish gasping adult Hypseleotris klunzingeri 3 3 0 3 Insufficient cold water (1929) evidence pollution will decrease survival of juveniles and adults 6. Low dissolved 33 McMaster & Dissolved oxygen Fish abundance adult; YOY Nannoperca australis; 3 13 3 10 Insufficent oxygen levels will Bond Hypseleotris klunzingeri evidence decrease survival (2008) of juveniles and 34 McMaster & Dissolved oxygen Fish mortality adult Nannoperca australis; 7 adults Bond Hypseleotris klunzingeri (2008) 35 Knight & Dissolved oxygen Fish abundance adult Nannoperca oxleyana 3 Arthington (2008)

Hypothesis Evidence Reference Cause Effect Life stage Species Support Refute Summary item Suport Refute Overall Veredict Pigmy Perch 36 Gee & Gee Dissolved oxygen Fish behaviour Gobiomorphus australis, 3 (1991) Hypseleotris compressa, Hypseleotris galii 7. An increase in 37 Mazumder et Water volume Fish competition adult & Hypseleotris v Carp 5 38 3 35 Support for exotic fish al (2012) YOY hypothesis abundance will 38 Stoffels & Exotic fihs Fish competition YOY Hypseleotris v Gambusia 3 decrease survival Humphries invasion of juveniles and (2003) adults. 39 Woodward & Exotic fihs Fish mortality presumed Nannoperca obscura, N 4 Malone invasion adult australis v Redfin (2002) 40 Knight et al Exotic fihs Fish behaviour presumed Nannoperca oxleyana v 1 (2012) invasion adult Gambusia 41 Arthington et Exotic fihs Fish abundance presumed Hypseleotris galii, H. 9 al (1983) invasion adult compressa, Mogurnda adspersa v Gambusia 42 Arthington & Exotic fihs Fish competition presumed Nannoperca oxleyana, 3 Marshall invasion adult Hypseleotris compressa, (1993) Hypseleotris galii 43 Stoffels Exotic fihs Fish abundance adult & Hypseleotris v. Perca 3 (1998) invasion YOY fluviatilis 44 Stoffels Exotic fihs Fish behaviour adult Hypseleotris v. Perca 7 (1998) invasion fluviatilis 45 Lloyd (1987) Exotic fihs Fish mortality adult & Nannoperca australis & 4 invasion YOY Hypseleotris klunzingeri v. Gambusia (also available for Perca) 46 Legget (1990) Exotic fihs Fish abundance - Nannoperca oxleyana v 2 invasion Gambusia

Table S2. (Cont.)

Hypothesis Evidence Reference Cause Effect Life stage Species Support Refute Summary item Suport Refute Overall Veredict Blackfish 1. Water temperatures above 1 O'Connor & Water Spawning reproduction Gadopsis bispinosus 3 15 16 1 Inconsistent 16 C will result in greater Zampatti temperature success evidence spawning success (2006) 2 Vilizzi (2012) Water Spawning reproduction Philypnodon 7 temperature success grandiceps 3 Humphries Water Spawning reproduction Philypnodon 3 (2002) temperature success grandiceps and Gadopsis marmoratus 4 Sanger (1990) Water Spawning reproduction Gadopsis bispinosus 3 temperature success

Hypothesis Evidence Reference Cause Effect Life stage Species Support Refute Summary item Suport Refute Overall Veredict Blackfish 5 Sanger (1986) Water Spawning reproduction Gadopsis bispinosus 9 temperature success and Gadopsis marmoratus 6 Lintermans Water Spawning reproduction Gadopsis bispinosus 5 (1998) temperature success 7 Westergaard & Water Spawning reproduction Gadopsis marmoratus 1 Ye (2010) temperature success 2. An increase in winter 8 Lintermans Physical Pre-spawning reproduction Gadopsis bispinosus 5 5 0 5 Insufficient bankfull flow volumes will (1998) habitat condition evidence improve pre-spawning condition 3. The absence of late-spring ------high flows after spawning will increase survival of eggs and larvae 4. A slow rate of change in ------flow will increase juvenile survival 5. Low dissolved oxygen 9 Gee & Gee Dissolved Fish behaviour adult Philypnodon 3 3 0 3 Insufficient levels will decrease survival (1991) oxygen grandiceps & evidence of juveniles and adults Philypnodon sp. 6. An increase in exotic fish 10 Lloyd (1987) Exotic fihs Fish behaviour adult Philypnodon spp v 3 13 4 9 Insufficient abundance will decrease invasion Gambusia evidence survival of juveniles and 11 Jackson (1978) Exotic fihs Fish adult Gadopsis marmoratus 3 adults. invasion competition v Salmo trutta 12 Fletcher (1979) Exotic fihs Fish adult and Gadopsis marmoratus 3 invasion competition YOY v Salmo trutta 13 Lintermans Exotic fihs Fish adult and Gadopsis bispinosus v 3 (1998) invasion competition YOY Oncorhyncus mykiss 14 Lewis (1917) Exotic fihs Fish abundance adult Gadopsis v Trout and 4 invasion Perch 15 Cox (1917) Exotic fihs Fish mortality adult and Gadopsis v Trout 1 invasion YOY

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