Immuno-Electron and Confocal Laser Scanning Microscopy of the Glycocalyx
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Raft-Partitioning of the Ubiquitin Ligases Cbl and Nedd4 Upon Ige-Triggered Cell Signaling
Raft-partitioning of the ubiquitin ligases Cbl and Nedd4 upon IgE-triggered cell signaling Frank Lafont* and Kai Simons Max Planck Institute of Molecular Cell Biology and Genetics, Pfotenhauerstrasse 110, D-01307 Dresden, Germany; and European Molecular Biology Laboratory, Cell Biology and Biophysics Program, Meyerhofstrasse 1, D-69109 Heideleberg, Germany Contributed by Kai Simons, January 2, 2001 The high affinity receptor for IgE, FcRI on mast cells and basophils trophenol (DNP)-BSA and FITC-conjugated anti-DNP were plays an essential role in immunological defense. Upon multivalent from Molecular Probes. Anti-DNP IgE was purchased from antigen binding, FcRI becomes phoshorylated by the protein- Calbiochem. Fluorochrome-conjugated secondary antibodies tyrosine kinase Lyn, as a result of receptor clustering in lipid rafts. were from Jackson ImmunoResearch. FcRI has been shown to be ubiquitinated. Ubiquitination can lead to degradation by proteasomes, but it can also act as a sorting Electroporation, Sensitization, Activation, and Cyclodextrin Treat- signal to internalize proteins destined to the endosomal͞lysosomal ment. Cells were grown in RPMI, 10% FCS (GIBCO͞BRL). pathway. We have analyzed whether FcRI ubiquitination takes Cells were trypsinized and washed, and 2 ϫ 107 RBL cells were place within rafts. We report biochemical and imaging evidence in placed in a 1-ml electroporation gene pulser cuvette. A Bio-Rad rat basoleukemia cells for the presence of ubiquitinated FcRI in microporator was used for loading the pMT123 plasmid (Ϸ10 clustered rafts upon receptor activation. Moreover, we demon- g͞ml). RBL cells were electroporated at a field strength of 330 strated that the ubiquitin ligases Cbl and Nedd4 colocalize with V, 960 F applied for 2 s. -
Antibodies for Immunolabeling by Light and Electron Microscopy: Not for the Faint Hearted
Histochem Cell Biol (2014) 142:347–360 DOI 10.1007/s00418-014-1263-5 REVIEW Antibodies for immunolabeling by light and electron microscopy: not for the faint hearted Gareth Griffiths · John Milton Lucocq Accepted: 23 July 2014 / Published online: 24 August 2014 © The Author(s) 2014. This article is published with open access at Springerlink.com Abstract Reliable antibodies represent crucial tools in Introduction the arsenal of the cell biologist and using them to local- ize antigens for immunocytochemistry is one of their most The use of antibodies to identify the localization of anti- important applications. However, antibody–antigen inter- gens in cells and tissues has long been one of the most actions are much more complex and unpredictable than powerful and popular tools in cell biology and related dis- suggested by the old ‘lock and key’ analogy, and the goal ciplines. When one knows for sure in which cells, and then of trying to prove that an antibody is specific is far more in which organelles an antigen resides, one acquires crucial difficult than is generally appreciated. Here, we discuss the information about the antigen and its potential functions. problems associated with the very complicated issue of try- The theory is ‘clean’: one makes an antibody against, say a ing to establish that an antibody (and the results obtained purified protein and the antibody is supposed to bind to the with it) is specific for the immunolabeling approaches used antigen like a key fits a lock. It should thus be technically in light or electron microscopy. We discuss the increasing straightforward to add the antibody to, say a section of awareness that significant numbers of commercial anti- cells or tissues and identify unequivocally where the anti- bodies are often not up to the quality required. -
Vocabulario De Morfoloxía, Anatomía E Citoloxía Veterinaria
Vocabulario de Morfoloxía, anatomía e citoloxía veterinaria (galego-español-inglés) Servizo de Normalización Lingüística Universidade de Santiago de Compostela COLECCIÓN VOCABULARIOS TEMÁTICOS N.º 4 SERVIZO DE NORMALIZACIÓN LINGÜÍSTICA Vocabulario de Morfoloxía, anatomía e citoloxía veterinaria (galego-español-inglés) 2008 UNIVERSIDADE DE SANTIAGO DE COMPOSTELA VOCABULARIO de morfoloxía, anatomía e citoloxía veterinaria : (galego-español- inglés) / coordinador Xusto A. Rodríguez Río, Servizo de Normalización Lingüística ; autores Matilde Lombardero Fernández ... [et al.]. – Santiago de Compostela : Universidade de Santiago de Compostela, Servizo de Publicacións e Intercambio Científico, 2008. – 369 p. ; 21 cm. – (Vocabularios temáticos ; 4). - D.L. C 2458-2008. – ISBN 978-84-9887-018-3 1.Medicina �������������������������������������������������������������������������veterinaria-Diccionarios�������������������������������������������������. 2.Galego (Lingua)-Glosarios, vocabularios, etc. políglotas. I.Lombardero Fernández, Matilde. II.Rodríguez Rio, Xusto A. coord. III. Universidade de Santiago de Compostela. Servizo de Normalización Lingüística, coord. IV.Universidade de Santiago de Compostela. Servizo de Publicacións e Intercambio Científico, ed. V.Serie. 591.4(038)=699=60=20 Coordinador Xusto A. Rodríguez Río (Área de Terminoloxía. Servizo de Normalización Lingüística. Universidade de Santiago de Compostela) Autoras/res Matilde Lombardero Fernández (doutora en Veterinaria e profesora do Departamento de Anatomía e Produción Animal. -
Cell Structure and Function
BIOLOGY Chapter 4: pp. 59-84 10th Edition Cell Structure and S. Sylvia Function Plasma membrane: outer surface that Ribosome: Fimbriae: regulates entrance site of protein synthesis hairlike bristles that and exit of molecules allow adhesion to Mader the surfaces Inclusion body: Conjugation pilus: stored nutrients for elongated, hollow later use appendage used for DNA transfer to other Nucleus: Mesosome: bacterial cells plasma membrane Cytoskeleton: maintains cell that folds into the Nucleoid: shape and assists cytoplasm and location of the bacterial movement of increases surface area chromosome cell parts: Endoplasmic Plasma membrane: reticulum: sheath around cytoplasm that regulates entrance and exit of molecules Cell wall: covering that supports, shapes, and protects cell Glycocalyx: gel-like coating outside cell wall; if compact, called a capsule; if diffuse, called a slime layer Flagellum: rotating filament present in some bacteria that pushes the cell forward *not in plant cells PowerPoint® Lecture Slides are prepared by Dr. Isaac Barjis, Biology Instructor 1 Copyright © The McGraw Hill Companies Inc. Permission required for reproduction or display Outline Cellular Level of Organization Cell theory Cell size Prokaryotic Cells Eukaryotic Cells Organelles Nucleus and Ribosome Endomembrane System Other Vesicles and Vacuoles Energy related organelles Cytoskeleton Centrioles, Cilia, and Flagella 2 Cell Theory Detailed study of the cell began in the 1830s A unifying concept in biology Originated from the work of biologists Schleiden and Schwann in 1838-9 States that: All organisms are composed of cells German botanist Matthais Schleiden in 1838 German zoologist Theodor Schwann in 1839 All cells come only from preexisting cells German physician Rudolph Virchow in 1850’s Cells are the smallest structural and functional unit of organisms 3 Organisms and Cells Copyright © The McGraw-Hill Companies, Inc. -
How Does Protein Zero Assemble Compact Myelin?
Preprints (www.preprints.org) | NOT PEER-REVIEWED | Posted: 13 May 2020 doi:10.20944/preprints202005.0222.v1 Peer-reviewed version available at Cells 2020, 9, 1832; doi:10.3390/cells9081832 Perspective How Does Protein Zero Assemble Compact Myelin? Arne Raasakka 1,* and Petri Kursula 1,2 1 Department of Biomedicine, University of Bergen, Jonas Lies vei 91, NO-5009 Bergen, Norway 2 Faculty of Biochemistry and Molecular Medicine & Biocenter Oulu, University of Oulu, Aapistie 7A, FI-90220 Oulu, Finland; [email protected] * Correspondence: [email protected] Abstract: Myelin protein zero (P0), a type I transmembrane protein, is the most abundant protein in peripheral nervous system (PNS) myelin – the lipid-rich, periodic structure that concentrically encloses long axonal segments. Schwann cells, the myelinating glia of the PNS, express P0 throughout their development until the formation of mature myelin. In the intramyelinic compartment, the immunoglobulin-like domain of P0 bridges apposing membranes together via homophilic adhesion, forming a dense, macroscopic ultrastructure known as the intraperiod line. The C-terminal tail of P0 adheres apposing membranes together in the narrow cytoplasmic compartment of compact myelin, much like myelin basic protein (MBP). In mouse models, the absence of P0, unlike that of MBP or P2, severely disturbs the formation of myelin. Therefore, P0 is the executive molecule of PNS myelin maturation. How and when is P0 trafficked and modified to enable myelin compaction, and how disease mutations that give rise to incurable peripheral neuropathies alter the function of P0, are currently open questions. The potential mechanisms of P0 function in myelination are discussed, providing a foundation for the understanding of mature myelin development and how it derails in peripheral neuropathies. -
Structural Insights Into Membrane Fusion Mediated by Convergent Small Fusogens
cells Review Structural Insights into Membrane Fusion Mediated by Convergent Small Fusogens Yiming Yang * and Nandini Nagarajan Margam Department of Microbiology and Immunology, Dalhousie University, Halifax, NS B3H 4R2, Canada; [email protected] * Correspondence: [email protected] Abstract: From lifeless viral particles to complex multicellular organisms, membrane fusion is inarguably the important fundamental biological phenomena. Sitting at the heart of membrane fusion are protein mediators known as fusogens. Despite the extensive functional and structural characterization of these proteins in recent years, scientists are still grappling with the fundamental mechanisms underlying membrane fusion. From an evolutionary perspective, fusogens follow divergent evolutionary principles in that they are functionally independent and do not share any sequence identity; however, they possess structural similarity, raising the possibility that membrane fusion is mediated by essential motifs ubiquitous to all. In this review, we particularly emphasize structural characteristics of small-molecular-weight fusogens in the hope of uncovering the most fundamental aspects mediating membrane–membrane interactions. By identifying and elucidating fusion-dependent functional domains, this review paves the way for future research exploring novel fusogens in health and disease. Keywords: fusogen; SNARE; FAST; atlastin; spanin; myomaker; myomerger; membrane fusion 1. Introduction Citation: Yang, Y.; Margam, N.N. Structural Insights into Membrane Membrane fusion -
NIH Public Access Author Manuscript Mucosal Immunol
NIH Public Access Author Manuscript Mucosal Immunol. Author manuscript; available in PMC 2014 March 01. NIH-PA Author ManuscriptPublished NIH-PA Author Manuscript in final edited NIH-PA Author Manuscript form as: Mucosal Immunol. 2013 March ; 6(2): 379–392. doi:10.1038/mi.2012.81. Molecular Organization of the Mucins and Glycocalyx Underlying Mucus Transport Over Mucosal Surfaces of the Airways Mehmet Kesimer*,‡,▫, Camille Ehre*, Kimberly A. Burns*, C. William Davis*,†, John K. Sheehan*,‡, and Raymond J. Pickles*,§ *Cystic Fibrosis/Pulmonary Research and Treatment Center, University of North Carolina, Chapel Hill, NC 27599-7248 ‡Department of Biochemistry and Biophysics, University of North Carolina, Chapel Hill, NC 27599-7248 †Department of Cell and Molecular Physiology, University of North Carolina, Chapel Hill, NC 27599-7248 §Department of Microbiology and Immunology, University of North Carolina, Chapel Hill, NC 27599-7248 Abstract Mucus, with its burden of inspired particulates, and pathogens, is cleared from mucosal surfaces of the airways by cilia beating within the periciliary layer (PCL). The PCL is held to be ‘watery’ and free of mucus by thixotropic-like forces arising from beating cilia. With radii of gyration ~250 nm, however, polymeric mucins should reptate readily into the PCL, so we assessed the glycocalyx for barrier functions. The PCL stained negative for MUC5AC and MUC5B, but it was positive for keratan sulfate, a glycosaminoglycan commonly associated with glycoconjugates. Shotgun proteomics showed keratan sulfate-rich fractions from mucus containing abundant tethered mucins, MUC1, MUC4, and MUC16, but no proteoglycans. Immuno-histology by light and electron microscopy localized MUC1 to microvilli, MUC4 and MUC20 to cilia, and MUC16 to goblet cells. -
Improved Methods for Fluorescent Labeling and Detection of Single
www.nature.com/scientificreports OPEN Improved methods for fuorescent labeling and detection of single extracellular vesicles using Received: 24 January 2018 Accepted: 26 July 2019 nanoparticle tracking analysis Published: xx xx xxxx Kristen E. Thane, Airiel M. Davis & Andrew M. Hofman Growing interest in extracellular vesicles (EV) has necessitated development of protocols to improve EV characterization as a precursor for myriad downstream investigations. Identifying expression of EV surface epitopes can aid in determining EV enrichment and allow for comparisons of sample phenotypes. This study was designed to test a rigorous method of indirect fuorescent immunolabeling of single EV with subsequent evaluation using nanoparticle tracking analysis (NTA) to simultaneously determine EV concentration, particle size distribution, and surface immunophenotype. In this study, EV were isolated from canine and human cell cultures for immunolabeling and characterized using NTA, transmission electron microscopy, and Western blotting. Indirect fuorescent immunolabeling utilizing quantum dots (Qd) resulted in reproducible detection of individual fuorescently labeled EV using NTA. Methods were proposed to evaluate the success of immunolabeling based on paired particle detection in NTA light scatter and fuorescent modes. Bead-assisted depletion and size-exclusion chromatography improved specifcity of Qd labeling. The described method for indirect immunolabeling of EV and single vesicle detection using NTA ofers an improved method for estimating the fraction of EV that express a specifc epitope, while approximating population size distribution and concentration. Studies of extracellular vesicle (EV) biogenesis, disease relevance, and diagnostic and therapeutic potential have rapidly expanded over the last decade, prompting the advancement of rigorous methods to characterize the bio- physical, phenotypic, and functional attributes of EV1. -
Review Sialic Acid-Specific Lectins: Occurrence, Specificity and Function
Cell. Mol. Life Sci. 63 (2006) 1331–1354 1420-682X/06/121331-24 DOI 10.1007/s00018-005-5589-y Cellular and Molecular Life Sciences © Birkhäuser Verlag, Basel, 2006 Review Sialic acid-specific lectins: occurrence, specificity and function F. Lehmanna, *, E. Tiralongob and J. Tiralongoa a Institute for Glycomics, Griffith University (Gold Coast Campus), PMB 50 Gold Coast Mail Centre Australia 9726 (Australia), Fax: +61 7 5552 8098; e-mail: [email protected] b School of Pharmacy, Griffith University (Gold Coast Campus), PMB 50 Gold Coast Mail Centre Australia 9726 (Australia) Received 13 December 2005; received after revision 9 February 2006; accepted 15 February 2006 Online First 5 April 2006 Abstract. Sialic acids consist of a family of acidic nine- through specific interactions with lectins, a family of carbon sugars that are typically located at the terminal po- proteins that recognise and bind sugars. This review will sitions of a variety of glycoconjugates. Naturally occur- present a detailed overview of our current knowledge re- ring sialic acids show an immense diversity of structure, garding the occurrence, specificity and function of sialic and this reflects their involvement in a variety of biologi- acid-specific lectins, particularly those that occur in vi- cally important processes. One such process involves the ruses, bacteria and non-vertebrate eukaryotes. direct participation of sialic acids in recognition events Keywords. Sialic acid, lectin, sialoglycoconjugate, sialic acid-specific lectin, adhesin, infectious disease, immunology. Introduction [1, 2]. The largest structural variations of naturally occurring Sia are at carbon 5, which can be substituted with either an Sialic acids (Sia) are a family of nine-carbon a-keto acids acetamido, hydroxyacetamido or hydroxyl moiety to form (Fig. -
Nanoarchitecture and Dynamics of the Mouse Enteric Glycocalyx Examined by Freeze-Etching Electron Tomography and Intravital Microscopy
ARTICLE https://doi.org/10.1038/s42003-019-0735-5 OPEN Nanoarchitecture and dynamics of the mouse enteric glycocalyx examined by freeze-etching electron tomography and intravital microscopy Willy W. Sun1,2,5, Evan S. Krystofiak1,5, Alejandra Leo-Macias1, Runjia Cui1, Antonio Sesso3, Roberto Weigert 4, 1234567890():,; Seham Ebrahim4 & Bechara Kachar 1* The glycocalyx is a highly hydrated, glycoprotein-rich coat shrouding many eukaryotic and prokaryotic cells. The intestinal epithelial glycocalyx, comprising glycosylated transmembrane mucins, is part of the primary host-microbe interface and is essential for nutrient absorption. Its disruption has been implicated in numerous gastrointestinal diseases. Yet, due to chal- lenges in preserving and visualizing its native organization, glycocalyx structure-function relationships remain unclear. Here, we characterize the nanoarchitecture of the murine enteric glycocalyx using freeze-etching and electron tomography. Micrometer-long mucin filaments emerge from microvillar-tips and, through zigzagged lateral interactions form a three-dimensional columnar network with a 30 nm mesh. Filament-termini converge into globular structures ~30 nm apart that are liquid-crystalline packed within a single plane. Finally, we assess glycocalyx deformability and porosity using intravital microscopy. We argue that the columnar network architecture and the liquid-crystalline packing of the fila- ment termini allow the glycocalyx to function as a deformable size-exclusion filter of luminal contents. 1 Laboratory of Cell Structure and Dynamics, National Institute on Deafness and Other Communication Disorders, National Institutes of Health, Bethesda, MD 20892, USA. 2 Neuroscience and Cognitive Science Program, University of Maryland, College Park, MD 20740, USA. 3 Sector of Structural Biology, Institute of Tropical Medicine, University of São Paulo, Sao Paulo, SP 05403, Brazil. -
Nomina Histologica Veterinaria, First Edition
NOMINA HISTOLOGICA VETERINARIA Submitted by the International Committee on Veterinary Histological Nomenclature (ICVHN) to the World Association of Veterinary Anatomists Published on the website of the World Association of Veterinary Anatomists www.wava-amav.org 2017 CONTENTS Introduction i Principles of term construction in N.H.V. iii Cytologia – Cytology 1 Textus epithelialis – Epithelial tissue 10 Textus connectivus – Connective tissue 13 Sanguis et Lympha – Blood and Lymph 17 Textus muscularis – Muscle tissue 19 Textus nervosus – Nerve tissue 20 Splanchnologia – Viscera 23 Systema digestorium – Digestive system 24 Systema respiratorium – Respiratory system 32 Systema urinarium – Urinary system 35 Organa genitalia masculina – Male genital system 38 Organa genitalia feminina – Female genital system 42 Systema endocrinum – Endocrine system 45 Systema cardiovasculare et lymphaticum [Angiologia] – Cardiovascular and lymphatic system 47 Systema nervosum – Nervous system 52 Receptores sensorii et Organa sensuum – Sensory receptors and Sense organs 58 Integumentum – Integument 64 INTRODUCTION The preparations leading to the publication of the present first edition of the Nomina Histologica Veterinaria has a long history spanning more than 50 years. Under the auspices of the World Association of Veterinary Anatomists (W.A.V.A.), the International Committee on Veterinary Anatomical Nomenclature (I.C.V.A.N.) appointed in Giessen, 1965, a Subcommittee on Histology and Embryology which started a working relation with the Subcommittee on Histology of the former International Anatomical Nomenclature Committee. In Mexico City, 1971, this Subcommittee presented a document entitled Nomina Histologica Veterinaria: A Working Draft as a basis for the continued work of the newly-appointed Subcommittee on Histological Nomenclature. This resulted in the editing of the Nomina Histologica Veterinaria: A Working Draft II (Toulouse, 1974), followed by preparations for publication of a Nomina Histologica Veterinaria. -
Lipoprotein Cholesterols Are Stored in High-Resistant
Preprints (www.preprints.org) | NOT PEER-REVIEWED | Posted: 10 October 2018 doi:10.20944/preprints201810.0211.v1 Lipoprotein cholesterols are stored in high-resistant, metastatic cancer cells and released upon stress: implication for a mechanism underlying hypocholesterolemia in cancer patients Taka Eguchi1,2,3,*, Chiharu Sogawa1,3, Kisho Ono1, Mami Itagaki1,3, Masaki Matsumoto1 1Department of Dental Pharmacology, Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Okayama University, Okayama, Japan. 2Advanced Research Center for Oral and Craniofacial Sciences, Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Okayama University, Okayama, Japan. 3Okayama University Dental School, Okayama, Japan. 4Department of Molecular and Cellular Biology, Medical Institute of Bioregulation, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka 812-8582, Japan. *Correspondence and requests for materials should be addressed to: Taka Eguchi, D.D.S., Ph.D. 2-5-1 Shikata-cho, Okayama 700-8525 Japan Phone: +81-86-235-6662; Fax: +81-86-235-6664 E-mail: [email protected] Author Contributions: TE conceptualized and designed the study. TE, CS, and MM prepared resources. TE, MM, CS, KO devised methodology. CS, MM, KO, MI carried out the experimentation. TE, KO, CS, MM interpreted data. TE wrote the manuscript. KO, CS revised and edited the manuscript. All authors reviewed the manuscript. 1 © 2018 by the author(s). Distributed under a Creative Commons CC BY license. Preprints (www.preprints.org) | NOT PEER-REVIEWED | Posted: 10 October 2018 doi:10.20944/preprints201810.0211.v1 Abstract Resistant cancer often shows a particular secretory trait such as heat shock proteins (HSPs) and extracellular vesicles (EVs), including exosomes and oncosomes surrounded by lipid bilayers.