Using Awk to Analyze Bro Logs
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Modern Programming Languages CS508 Virtual University of Pakistan
Modern Programming Languages (CS508) VU Modern Programming Languages CS508 Virtual University of Pakistan Leaders in Education Technology 1 © Copyright Virtual University of Pakistan Modern Programming Languages (CS508) VU TABLE of CONTENTS Course Objectives...........................................................................................................................4 Introduction and Historical Background (Lecture 1-8)..............................................................5 Language Evaluation Criterion.....................................................................................................6 Language Evaluation Criterion...................................................................................................15 An Introduction to SNOBOL (Lecture 9-12).............................................................................32 Ada Programming Language: An Introduction (Lecture 13-17).............................................45 LISP Programming Language: An Introduction (Lecture 18-21)...........................................63 PROLOG - Programming in Logic (Lecture 22-26) .................................................................77 Java Programming Language (Lecture 27-30)..........................................................................92 C# Programming Language (Lecture 31-34) ...........................................................................111 PHP – Personal Home Page PHP: Hypertext Preprocessor (Lecture 35-37)........................129 Modern Programming Languages-JavaScript -
Unix/Linux Command Reference
Unix/Linux Command Reference .com File Commands System Info ls – directory listing date – show the current date and time ls -al – formatted listing with hidden files cal – show this month's calendar cd dir - change directory to dir uptime – show current uptime cd – change to home w – display who is online pwd – show current directory whoami – who you are logged in as mkdir dir – create a directory dir finger user – display information about user rm file – delete file uname -a – show kernel information rm -r dir – delete directory dir cat /proc/cpuinfo – cpu information rm -f file – force remove file cat /proc/meminfo – memory information rm -rf dir – force remove directory dir * man command – show the manual for command cp file1 file2 – copy file1 to file2 df – show disk usage cp -r dir1 dir2 – copy dir1 to dir2; create dir2 if it du – show directory space usage doesn't exist free – show memory and swap usage mv file1 file2 – rename or move file1 to file2 whereis app – show possible locations of app if file2 is an existing directory, moves file1 into which app – show which app will be run by default directory file2 ln -s file link – create symbolic link link to file Compression touch file – create or update file tar cf file.tar files – create a tar named cat > file – places standard input into file file.tar containing files more file – output the contents of file tar xf file.tar – extract the files from file.tar head file – output the first 10 lines of file tar czf file.tar.gz files – create a tar with tail file – output the last 10 lines -
101 Useful Linux Commands - Haydenjames.Io
101 Useful Linux Commands - haydenjames.io Some of these commands require elevated permissions (sudo) to run. Enjoy! 1. Execute the previous command used: !! 2. Execute a previous command starting with a specific letter. Example: !s 3. Short way to copy or backup a file before you edit it. For example, copy nginx.conf cp nginx.conf{,.bak} 4. Toggle between current directory and last directory cd - 5. Move to parent (higher level) directory. Note the space! cd .. 6. Go to home directory cd ~ 7. Go to home directory cd $HOME 8. Go to home directory (when used alone) cd 9. Set permissions to 755. Corresponds to these permissions: (-rwx-r-x-r-x), arranged in this sequence: (owner-group-other) chmod 755 <filename> 10. Add execute permission to all users. chmod a+x <filename> 11. Changes ownership of a file or directory to . chown <username> 12. Make a backup copy of a file (named file.backup) cp <file> <file>.backup 13. Copy file1, use it to create file2 cp <file1> <file2> 14. Copy directory1 and all its contents (recursively) into directory2 cp -r <directory1> <directory2>/ 15. Display date date 16. Zero the sdb drive. You may want to use GParted to format the drive afterward. You need elevated permissions to run this (sudo). dd if=/dev/zero of=/dev/sdb 17. Display disk space usage df -h 18. Take detailed messages from OS and input to text file dmesg>dmesg.txt 19. Display a LOT of system information. I usually pipe output to less. You need elevated permissions to run this (sudo). -
Dig, a DNS Query Tool for Windows and Replacement for Nslookup 2008-04-15 15:29
dig, a DNS query tool for Windows and replacement for nslookup 2008-04-15 15:29 Disclaimer dig (dig for Windows ) (dig is a powerful tool to investigate [digging into] the DNS system) Source of the binary is from ftp.isc.org Manual Page of dig, in the cryptic Unix style, for reference only. (1) Download: Windows 2000 or Windows XP or Windows Vista ( dig version 9.3.2) Create a folder c:\dig Download this dig-files.zip and save it to c:\dig Use winzip or equivalent to extract the files in dig-files.zip to c:\dig Note: If msvcr70.dll already exists in %systemroot%\system32\ , then you can delete c:\dig\msvcr70.dll Note: Included in dig-files.zip is a command line whois, version 4.7.11: The canonical site of the whois source code is http://ftp.debian.org/debian/pool/main/w/whois/ The whois.exe file inside dig-files.zip is compiled using cygwin c++ compiler. (2) Do a file integrity check (why ? Because some virus checkers destroy dll files) Click Start.. Run ... type CMD (a black screen pops up) cd c:\dig sha1 * You should see some SHA1 hashes (in here, SHA1 hash is used as an integrity check, similar to checksums). Compare your hashes with the following table. SHA1 v1.0 [GPLed] by Stephan T. Lavavej, http://stl.caltech.edu 6CA70A2B 11026203 EABD7D65 4ADEFE3D 6C933EDA cygwin1.dll 57487BAE AA0EB284 8557B7CA 54ED9183 EAFC73FA dig.exe 97DBD755 D67A5829 C138A470 8BE7A4F2 6ED0894C host.exe D22E4B89 56E1831F F0F9D076 20EC19BF 171F0C29 libbind9.dll 81588F0B E7D3C6B3 20EDC314 532D9F2D 0A105594 libdns.dll E0BD7187 BBC01003 ABFE7472 E64B68CD 1BDB6BAB libeay32.dll F445362E 728A9027 96EC6871 A79C6307 054974E4 libisc.dll B3255C0E 4808A703 F95C217A 91FFCD69 40E680C9 libisccfg.dll DFBDE4F9 E25FD49A 0846E97F D813D687 6DC94067 liblwres.dll 61B8F573 DB448AE6 351AE347 5C2E7C48 2D81533C msvcr70.dll BDA14B28 7987E168 F359F0C9 DD96866D 04AB189B resolv.conf 1112343A 319C3EEE E44BF261 AE196C96 289C70E2 sha1.exe 21D20035 2A5B64E2 69FEA407 4D78053F 3C7A2738 whois.exe If your hashes are the same as the above table, then your files pass the integrity check. -
Streamlining Integrated Infrastructure Implementation “Dig Once” Strategy Development Workshop June 9, 2016
Streamlining Integrated Infrastructure Implementation “Dig Once” Strategy Development Workshop June 9, 2016 Workshop Report February 2017 Sponsored By: Alliance for the Chesapeake Bay Local Government Advisory Committee (LGAC) Funding: National Fish & Wildlife Foundation (NFWF) Prepared By: Alliance for the Chesapeake Bay Hirschman Water & Environment, LLC 1. Workshop Overview and Focus The focus of this workshop was to explore better ways to integrate green infrastructure (GI) into other infrastructure projects, such as roads, school and park improvements, and other capital projects. The workshop was hosted by the Alliance for the Chesapeake Bay (ACB) in conjunction with the Local Government Advisory Committee to the Chesapeake Executive Council (LGAC), with funding from the National Fish & Wildlife Foundation (NFWF). Mary Gattis, Director of Local Government Programs for ACB, was the lead facilitator for the workshop. The workshop was held on June 9, 2016 at the Eisenhower Hotel in Gettysburg, Pennsylvania. The organizers targeted certain sector representatives for attendance in order to achieve the necessary cross-section of experiences and points of view. Figure 1 shows the breakdown of attendees by type of organization. A total of 58 individuals attended the 1-day workshop, 52 participants and six staff representatives. See Appendix A for a list of workshop participants. Prior to the workshop, the following problem statement and workshop goal Figure 1. Representation of 52 Workshop Attendees were sent to attendees as part of the agenda. This was done in order to maintain a clear focus for the workshop, as the topic of green infrastructure has many facets, each of which could fill the entire agenda for a one-day event. -
“Linux at the Command Line” Don Johnson of BU IS&T We’Ll Start with a Sign in Sheet
“Linux at the Command Line” Don Johnson of BU IS&T We’ll start with a sign in sheet. We’ll end with a class evaluation. We’ll cover as much as we can in the time allowed; if we don’t cover everything, you’ll pick it up as you continue working with Linux. This is a hands-on, lab class; ask questions at any time. Commands for you to type are in BOLD The Most Common O/S Used By BU Researchers When Working on a Server or Computer Cluster Linux is a Unix clone begun in 1991 and written from scratch by Linus Torvalds with assistance from a loosely-knit team of hackers across the Net. 64% of the world’s servers run some variant of Unix or Linux. The Android phone and the Kindle run Linux. a set of small Linux is an O/S core programs written by written by Linus Richard Stallman and Torvalds and others others. They are the AND GNU utilities. http://www.gnu.org/ Network: ssh, scp Shells: BASH, TCSH, clear, history, chsh, echo, set, setenv, xargs System Information: w, whoami, man, info, which, free, echo, date, cal, df, free Command Information: man, info Symbols: |, >, >>, <, ;, ~, ., .. Filters: grep, egrep, more, less, head, tail Hotkeys: <ctrl><c>, <ctrl><d> File System: ls, mkdir, cd, pwd, mv, touch, file, find, diff, cmp, du, chmod, find File Editors: gedit, nedit You need a “xterm” emulation – software that emulates an “X” terminal and that connects using the “SSH” Secure Shell protocol. ◦ Windows Use StarNet “X-Win32:” http://www.bu.edu/tech/support/desktop/ distribution/xwindows/xwin32/ ◦ Mac OS X “Terminal” is already installed Why? Darwin, the system on which Apple's Mac OS X is built, is a derivative of 4.4BSD-Lite2 and FreeBSD. -
Unix/Linux Command Reference
Unix/Linux Command Reference .com File Commands System Info ls – directory listing date – show the current date and time ls -al – formatted listing with hidden files cal – show this month's calendar cd dir - change directory to dir uptime – show current uptime cd – change to home w – display who is online pwd – show current directory whoami – who you are logged in as mkdir dir – create a directory dir finger user – display information about user rm file – delete file uname -a – show kernel information rm -r dir – delete directory dir cat /proc/cpuinfo – cpu information rm -f file – force remove file cat /proc/meminfo – memory information rm -rf dir – force remove directory dir * man command – show the manual for command cp file1 file2 – copy file1 to file2 df – show disk usage cp -r dir1 dir2 – copy dir1 to dir2; create dir2 if it du – show directory space usage doesn't exist free – show memory and swap usage mv file1 file2 – rename or move file1 to file2 whereis app – show possible locations of app if file2 is an existing directory, moves file1 into which app – show which app will be run by default directory file2 ln -s file link – create symbolic link link to file Compression touch file – create or update file tar cf file.tar files – create a tar named cat > file – places standard input into file file.tar containing files more file – output the contents of file tar xf file.tar – extract the files from file.tar head file – output the first 10 lines of file tar czf file.tar.gz files – create a tar with tail file – output the last 10 lines -
Exercise I: Basic Unix for Manipulating NGS Data
Exercise I: Basic Unix for manipulating NGS data C. Hahn, July 2014 The purpose of this exercise is to practice manipulating NGS (Next Generation Sequencing) data using simple but incredibly powerful Unix commands. Try to solve the below tasks using your Unix skills. Do not hesitate to consult Google for help!! Hints for every task can be found on page 3 below. Possible solutions are suggested on page 4. 1. Download the testdata from https://www.dropbox.com/s/wcanmej6z03yfmt/testdata_1.tar?dl=0. Create a directory (exercise_1) in your home directory and copy the archive testdata.tar from ~/Downloads/ to this directory. 2. Decompress the archive. 3. Examine the content of the data files. For basic information on fastq format please visit: http://en.wikipedia.org/wiki/FASTQ_format. With this information try to interpret the content of your data files. Do you Know what all the lines represent? a) Which quality encoding (which offset) do these files use? b) What is the header of the third read in the file? Is this a single-end (forward) or a paired-end (reverse) read? c) What is the header of the last read in the file? Is this a forward or reverse read? 4. How many lines does the file have? 5. How many reads does the file contain? 6. How many single-end (“se” also referred to as forward reads) reads and how many paired-end (“pe” also reverse reads) reads does the file contain? 7. Extract all se/pe reads and write them to separate files testdata_1.fastq and testdata_2.fastq. -
A Highly Configurable High-Level Synthesis Functional Pattern Library
electronics Article A Highly Configurable High-Level Synthesis Functional Pattern Library Lan Huang 1,2,‡, Teng Gao 1,‡, Dalin Li 1,†, Zihao Wang 1 and Kangping Wang 1,2,* 1 College of Computer Science and Technology, Jilin University, Changchun 130012, China; [email protected] (L.H.); [email protected] (T.G.); [email protected] (D.L.); [email protected] (Z.W.) 2 Key Laboratory of Symbolic Computation and Knowledge Engineering, Jilin University, Changchun 130012, China * Correspondence: [email protected] † Current address: Zhuhai Laboratory of Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education, Department of Computer Science and Technology, Zhuhai College of Jilin University, Zhuhai 519041, China. ‡ These authors contributed equally to this work. Abstract: FPGA has recently played an increasingly important role in heterogeneous computing, but Register Transfer Level design flows are not only inefficient in design, but also require designers to be familiar with the circuit architecture. High-level synthesis (HLS) allows developers to design FPGA circuits more efficiently with a more familiar programming language, a higher level of abstraction, and automatic adaptation of timing constraints. When using HLS tools, such as Xilinx Vivado HLS, specific design patterns and techniques are required in order to create high-performance circuits. Moreover, designing efficient concurrency and data flow structures requires a deep understanding of the hardware, imposing more learning costs on programmers. In this paper, we propose a set of functional patterns libraries based on the MapReduce model, implemented by C++ templates, Citation: Huang, L.; Gao,T.; Li, D.; which can quickly implement high-performance parallel pipelined computing models on FPGA with Wang, Z.; Wang, K. -
Useful Commands in Linux and Other Tools for Quality Control
Useful commands in Linux and other tools for quality control Ignacio Aguilar INIA Uruguay 05-2018 Unix Basic Commands pwd show working directory ls list files in working directory ll as before but with more information mkdir d make a directory d cd d change to directory d Copy and moving commands To copy file cp /home/user/is . To copy file directory cp –r /home/folder . to move file aa into bb in folder test mv aa ./test/bb To delete rm yy delete the file yy rm –r xx delete the folder xx Redirections & pipe Redirection useful to read/write from file !! aa < bb program aa reads from file bb blupf90 < in aa > bb program aa write in file bb blupf90 < in > log Redirections & pipe “|” similar to redirection but instead to write to a file, passes content as input to other command tee copy standard input to standard output and save in a file echo copy stream to standard output Example: program blupf90 reads name of parameter file and writes output in terminal and in file log echo par.b90 | blupf90 | tee blup.log Other popular commands head file print first 10 lines list file page-by-page tail file print last 10 lines less file list file line-by-line or page-by-page wc –l file count lines grep text file find lines that contains text cat file1 fiel2 concatenate files sort sort file cut cuts specific columns join join lines of two files on specific columns paste paste lines of two file expand replace TAB with spaces uniq retain unique lines on a sorted file head / tail $ head pedigree.txt 1 0 0 2 0 0 3 0 0 4 0 0 5 0 0 6 0 0 7 0 0 8 0 0 9 0 0 10 -
CMSC 331 Midterm Exam, Fall 2010 a 5 30
1 40/ 2 30/ 3 45/ 331Midterm Exam 01 November 2010 4 30/ CMSC 331 Midterm Exam, Fall 2010 a 5 30/ 6 30/ 7 20/ Name: _________________________________ -------------- UMBC username:_____________________________ 225/ You will have seventy-five (75) minutes to complete this closed book/notes exam. Use the backs of these pages if you need more room for your answers. Describe any assumptions you make in solv- ing a problem. We reserve the right to assign partial credit, and to deduct points for answers that are needlessly wordy. 1. True/False [40] For each of the following questions, circle T (true) or F (false). T F 1.1 COBOL was designed as a programming language for scientific and engineering applica- tions. FALSE T F 1.2 The procedural programming paradigm treats procedures as first class objects. FALSE T F 1.3 The “Von Neumann” computer architecture is still used as the basis for most computers today. TRUE T F 1.4 One of the advantages of interpreted over compiled languages is that they tend to offer more run time debugging support. TRUE T F 1.5 Any finite language can be defined by a regular expression. TRUE T F 1.6 Attribute grammars can specify languages that can not be specified using a context free grammar. TRUE T F 1.7 A recursive descent parser can not directly use a grammar that has right recursive rules. FALSE T F 1.8 The lexical structure of complex programming languages like Java can not be defined using regular expressions. FALSE T F 1.9 A non-deterministic finite automaton for a regular language is generally easier to write than a deterministic one, but harder to apply to a string to see if it matches. -
Bash Guide for Beginners
Bash Guide for Beginners Machtelt Garrels Garrels BVBA <tille wants no spam _at_ garrels dot be> Version 1.11 Last updated 20081227 Edition Bash Guide for Beginners Table of Contents Introduction.........................................................................................................................................................1 1. Why this guide?...................................................................................................................................1 2. Who should read this book?.................................................................................................................1 3. New versions, translations and availability.........................................................................................2 4. Revision History..................................................................................................................................2 5. Contributions.......................................................................................................................................3 6. Feedback..............................................................................................................................................3 7. Copyright information.........................................................................................................................3 8. What do you need?...............................................................................................................................4 9. Conventions used in this