Growth and Differentiation of Gonium
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
A Spatial Interactome Reveals the Protein Organization of the Algal
HHS Public Access Author manuscript Author ManuscriptAuthor Manuscript Author Cell. Author Manuscript Author manuscript; Manuscript Author available in PMC 2018 September 21. Published in final edited form as: Cell. 2017 September 21; 171(1): 133–147.e14. doi:10.1016/j.cell.2017.08.044. A Spatial Interactome Reveals the Protein Organization of the Algal CO2 Concentrating Mechanism Luke C.M. Mackinder1,2, Chris Chen1,3, Ryan D. Leib4, Weronika Patena1, Sean R. Blum5, Matthew Rodman3, Silvia Ramundo6, Christopher M. Adams4, and Martin C. Jonikas1,3,7,8,* 1Department of Plant Biology, Carnegie Institution for Science, Stanford, CA 94305, USA 3Department of Biology, Stanford University, Stanford, CA 94305, USA 4Stanford University Mass Spectrometry, Stanford University, Stanford, CA, USA 5Department of Biomolecular Engineering, UC Santa Cruz, Santa Cruz, CA 95064, USA 6Department of Biochemistry and Biophysics, University of California, San Francisco, CA 94158, USA 7Department of Molecular Biology, Princeton University, Princeton, NJ 08544, USA SUMMARY Approximately one-third of global CO2 fixation is performed by eukaryotic algae. Nearly all algae enhance their carbon assimilation by operating a CO2-concentrating mechanism (CCM) built around an organelle called the pyrenoid, whose protein composition is largely unknown. Here, we developed tools in the model alga Chlamydomonas reinhardtii to determine the localizations of 135 candidate CCM proteins, and physical interactors of 38 of these proteins. Our data reveal the identity of 89 pyrenoid proteins, including Rubisco-interacting proteins, photosystem I assembly factor candidates and inorganic carbon flux components. We identify three previously un- described protein layers of the pyrenoid: a plate-like layer, a mesh layer and a punctate layer. -
The Plankton Lifeform Extraction Tool: a Digital Tool to Increase The
Discussions https://doi.org/10.5194/essd-2021-171 Earth System Preprint. Discussion started: 21 July 2021 Science c Author(s) 2021. CC BY 4.0 License. Open Access Open Data The Plankton Lifeform Extraction Tool: A digital tool to increase the discoverability and usability of plankton time-series data Clare Ostle1*, Kevin Paxman1, Carolyn A. Graves2, Mathew Arnold1, Felipe Artigas3, Angus Atkinson4, Anaïs Aubert5, Malcolm Baptie6, Beth Bear7, Jacob Bedford8, Michael Best9, Eileen 5 Bresnan10, Rachel Brittain1, Derek Broughton1, Alexandre Budria5,11, Kathryn Cook12, Michelle Devlin7, George Graham1, Nick Halliday1, Pierre Hélaouët1, Marie Johansen13, David G. Johns1, Dan Lear1, Margarita Machairopoulou10, April McKinney14, Adam Mellor14, Alex Milligan7, Sophie Pitois7, Isabelle Rombouts5, Cordula Scherer15, Paul Tett16, Claire Widdicombe4, and Abigail McQuatters-Gollop8 1 10 The Marine Biological Association (MBA), The Laboratory, Citadel Hill, Plymouth, PL1 2PB, UK. 2 Centre for Environment Fisheries and Aquacu∑lture Science (Cefas), Weymouth, UK. 3 Université du Littoral Côte d’Opale, Université de Lille, CNRS UMR 8187 LOG, Laboratoire d’Océanologie et de Géosciences, Wimereux, France. 4 Plymouth Marine Laboratory, Prospect Place, Plymouth, PL1 3DH, UK. 5 15 Muséum National d’Histoire Naturelle (MNHN), CRESCO, 38 UMS Patrinat, Dinard, France. 6 Scottish Environment Protection Agency, Angus Smith Building, Maxim 6, Parklands Avenue, Eurocentral, Holytown, North Lanarkshire ML1 4WQ, UK. 7 Centre for Environment Fisheries and Aquaculture Science (Cefas), Lowestoft, UK. 8 Marine Conservation Research Group, University of Plymouth, Drake Circus, Plymouth, PL4 8AA, UK. 9 20 The Environment Agency, Kingfisher House, Goldhay Way, Peterborough, PE4 6HL, UK. 10 Marine Scotland Science, Marine Laboratory, 375 Victoria Road, Aberdeen, AB11 9DB, UK. -
Phylogenetic Analysis and Substitution Rate Estimation of Colonial Volvocine Algae Based on Mitochondrial Genomes
G C A T T A C G G C A T genes Article Phylogenetic Analysis and Substitution Rate Estimation of Colonial Volvocine Algae Based on Mitochondrial Genomes Yuxin Hu 1,2, Weiyue Xing 1,2, Zhengyu Hu 3 and Guoxiang Liu 1,* 1 Key Laboratory of Algal Biology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China; [email protected] (Y.H.); [email protected] (W.X.) 2 School of Life Sciences, University of Chinese Academy of Sciences, Beijing 100049, China 3 State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China; [email protected] * Correspondence: [email protected]; Tel.: +86-027-6878-0576 Received: 11 December 2019; Accepted: 15 January 2020; Published: 20 January 2020 Abstract: We sequenced the mitochondrial genome of six colonial volvocine algae, namely: Pandorina morum, Pandorina colemaniae, Volvulina compacta, Colemanosphaera angeleri, Colemanosphaera charkowiensi, and Yamagishiella unicocca. Previous studies have typically reconstructed the phylogenetic relationship between colonial volvocine algae based on chloroplast or nuclear genes. Here, we explore the validity of phylogenetic analysis based on mitochondrial protein-coding genes. Wefound phylogenetic incongruence of the genera Yamagishiella and Colemanosphaera. In Yamagishiella, the stochastic error and linkage group formed by the mitochondrial protein-coding genes prevent phylogenetic analyses from reflecting the true relationship. In Colemanosphaera, a different reconstruction approach revealed a different phylogenetic relationship. This incongruence may be because of the influence of biological factors, such as incomplete lineage sorting or horizontal gene transfer. We also analyzed the substitution rates in the mitochondrial and chloroplast genomes between colonial volvocine algae. -
The Minor Transitions in Hierarchical Evolution and the Question of a Directional Bias
The minor transitions in hierarchical evolution and the question of a directional bias D. W. McSHEA Department of Biology, Duke University, Durham, NC 27708-0338, USA Keywords: Abstract complexity; The history of life shows a clear trend in hierarchical organization, revealed by evolutionary trends; the successive emergence of organisms with ever greater numbers of levels of hierarchy; nestedness and greater development, or `individuation', of the highest level. major transitions. Various arguments have been offered which suggest that the trend is the result of a directional bias, or tendency, meaning that hierarchical increases are more probable than decreases among lineages, perhaps because hierarchical increases are favoured, on average, by natural selection. Further, what little evidence exists seems to point to a bias: some major increases are known ± including the origin of the eukaryotic cell from prokaryotic cells and of animals, fungi and land plants from solitary eukaryotic cells ± but no major decreases (except in parasitic and commensal organisms), at least at the cellular and multicellular levels. The fact of a trend, combined with the arguments and evidence, might make a bias seem beyond doubt, but here I argue that its existence is an open empirical question. Further, I show how testing is possible. Maynard Smith & SzathmaÂry, 1995, 1999; SzathmaÂry & Introduction Maynard Smith, 1995; McShea, 1996a; Pettersson, 1996; One of the most salient and certain trends in the history Heylighen, 1999; Stewart, 2000; Wright, 2000; Knoll & of life is the increase in hierarchical structure in organ- Bambach, 2000). It is also ± to my knowledge ± isms. Figure 1 shows the approximate trajectory of the unchallenged. -
The Symbiotic Green Algae, Oophila (Chlamydomonadales
University of Connecticut OpenCommons@UConn Master's Theses University of Connecticut Graduate School 12-16-2016 The yS mbiotic Green Algae, Oophila (Chlamydomonadales, Chlorophyceae): A Heterotrophic Growth Study and Taxonomic History Nikolaus Schultz University of Connecticut - Storrs, [email protected] Recommended Citation Schultz, Nikolaus, "The yS mbiotic Green Algae, Oophila (Chlamydomonadales, Chlorophyceae): A Heterotrophic Growth Study and Taxonomic History" (2016). Master's Theses. 1035. https://opencommons.uconn.edu/gs_theses/1035 This work is brought to you for free and open access by the University of Connecticut Graduate School at OpenCommons@UConn. It has been accepted for inclusion in Master's Theses by an authorized administrator of OpenCommons@UConn. For more information, please contact [email protected]. The Symbiotic Green Algae, Oophila (Chlamydomonadales, Chlorophyceae): A Heterotrophic Growth Study and Taxonomic History Nikolaus Eduard Schultz B.A., Trinity College, 2014 A Thesis Submitted in Partial Fulfillment of the Requirements for the Degree of Master of Science at the University of Connecticut 2016 Copyright by Nikolaus Eduard Schultz 2016 ii ACKNOWLEDGEMENTS This thesis was made possible through the guidance, teachings and support of numerous individuals in my life. First and foremost, Louise Lewis deserves recognition for her tremendous efforts in making this work possible. She has performed pioneering work on this algal system and is one of the preeminent phycologists of our time. She has spent hundreds of hours of her time mentoring and teaching me invaluable skills. For this and so much more, I am very appreciative and humbled to have worked with her. Thank you Louise! To my committee members, Kurt Schwenk and David Wagner, thank you for your mentorship and guidance. -
Phylogenetic Analysis of ''Volvocacae'
Phylogenetic analysis of ‘‘Volvocacae’’ for comparative genetic studies Annette W. Coleman† Division of Biology and Medicine, Brown University, Providence, RI 02912 Edited by Elisabeth Gantt, University of Maryland, College Park, MD, and approved September 28, 1999 (received for review June 30, 1999) Sequence analysis based on multiple isolates representing essen- most of those obtained previously with data for other DNA tially all genera and species of the classic family Volvocaeae has regions in identifying major clades and their relationships. clarified their phylogenetic relationships. Cloned internal tran- However, the expanded taxonomic coverage revealed additional scribed spacer sequences (ITS-1 and ITS-2, flanking the 5.8S gene of and unexpected relationships. the nuclear ribosomal gene cistrons) were aligned, guided by ITS transcript secondary structural features, and subjected to parsi- Materials and Methods mony and neighbor joining distance analysis. Results confirm the The algal isolates that form the basis of this study are listed below notion of a single common ancestor, and Chlamydomonas rein- and Volvocacean taxonomy is summarized in Table 1. The taxon harditii alone among all sequenced green unicells is most similar. names are those found in the culture collection listings. Included Interbreeding isolates were nearest neighbors on the evolutionary is the Culture Collection designation [University of Texas, tree in all cases. Some taxa, at whatever level, prove to be clades National Institute for Environmental Studies (Japan), A.W.C. or by sequence comparisons, but others provide striking exceptions. R. C. Starr collection], an abbreviated name, and the GenBank The morphological species Pandorina morum, known to be wide- accession number. -
Fe-S Protein Synthesis in Green Algae Mitochondria
plants Review Fe-S Protein Synthesis in Green Algae Mitochondria Diego F. Gomez-Casati * , Maria V. Busi *, Julieta Barchiesi, Maria A. Pagani , Noelia S. Marchetti-Acosta and Agustina Terenzi Centro de Estudios Fotosintéticos y Bioquímicos (CEFOBI-CONICET), Universidad Nacional de Rosario, 2000 Rosario, Argentina; [email protected] (J.B.); [email protected] (M.A.P.); [email protected] (N.S.M.-A.); [email protected] (A.T.) * Correspondence: [email protected] (D.F.G.-C.); [email protected] (M.V.B.); Tel.: +54-341-4391955 (ext. 113) (D.F.G.-C. & M.V.B.) Abstract: Iron and sulfur are two essential elements for all organisms. These elements form the Fe-S clusters that are present as cofactors in numerous proteins and protein complexes related to key processes in cells, such as respiration and photosynthesis, and participate in numerous enzymatic reactions. In photosynthetic organisms, the ISC and SUF Fe-S cluster synthesis pathways are located in organelles, mitochondria, and chloroplasts, respectively. There is also a third biosynthetic machinery in the cytosol (CIA) that is dependent on the mitochondria for its function. The genes and proteins that participate in these assembly pathways have been described mainly in bacteria, yeasts, humans, and recently in higher plants. However, little is known about the proteins that participate in these processes in algae. This review work is mainly focused on releasing the information on the existence of genes and proteins of green algae (chlorophytes) that could participate in the assembly process of Fe-S groups, especially in the mitochondrial ISC and CIA pathways. -
Identification of the Minus-Dominance Gene Ortholog in the Mating-Type
Copyright Ó 2008 by the Genetics Society of America DOI: 10.1534/genetics.107.078618 Identification of the Minus-Dominance Gene Ortholog in the Mating-Type Locus of Gonium pectorale Takashi Hamaji,*,1 Patrick J. Ferris,† Annette W. Coleman,‡ Sabine Waffenschmidt,§ Fumio Takahashi,** Ichiro Nishii†† and Hisayoshi Nozaki* *Department of Biological Sciences, Graduate School of Science, University of Tokyo, Tokyo 113-0033, Japan, †Plant Biology Laboratory, Salk Institute, La Jolla, California 92037, ‡Division of Biology and Medicine, Brown University, Providence, Rhode Island 02906, §Institute of Biochemistry, University of Cologne, Cologne 50674, Germany, **Department of Biomolecular Sciences, Graduate School of Life Sciences, Tohoku University, Sendai-shi, Miyagi 980-8577, Japan and ††Frontier Research System, RIKEN, Wako-shi, Saitama 351-0198, Japan Manuscript received August 8, 2007 Accepted for publication November 6, 2007 ABSTRACT The evolution of anisogamy/oogamy in the colonial Volvocales might have occurred in an ancestral isogamous colonial organism like Gonium pectorale. The unicellular, close relative Chlamydomonas reinhardtii has a mating-type (MT) locus harboring several mating-type-specific genes, including one involved in mating-type determination and another involved in the function of the tubular mating structure in only one of the two isogametes. In this study, as the first step in identifying the G. pectorale MT locus, we isolated from G. pectorale the ortholog of the C. reinhardtii mating-type-determining minus-dominance (CrMID)gene, which is localized only in the MTÀ locus. 39-and59-RACE RT–PCR using degenerate primers identified a CrMID-orthologous 164-amino-acid coding gene (GpMID) containing a leucine-zipper RWP-RK domain near the C-terminal, as is the case with CrMID. -
Factors Affecting Phytoplankton Biodiversity and Toxin Production Tracey Magrann Loma Linda University
Loma Linda University TheScholarsRepository@LLU: Digital Archive of Research, Scholarship & Creative Works Loma Linda University Electronic Theses, Dissertations & Projects 6-1-2011 Factors Affecting Phytoplankton Biodiversity and Toxin Production Tracey Magrann Loma Linda University Follow this and additional works at: http://scholarsrepository.llu.edu/etd Part of the Biology Commons Recommended Citation Magrann, Tracey, "Factors Affecting Phytoplankton Biodiversity and Toxin Production" (2011). Loma Linda University Electronic Theses, Dissertations & Projects. 45. http://scholarsrepository.llu.edu/etd/45 This Dissertation is brought to you for free and open access by TheScholarsRepository@LLU: Digital Archive of Research, Scholarship & Creative Works. It has been accepted for inclusion in Loma Linda University Electronic Theses, Dissertations & Projects by an authorized administrator of TheScholarsRepository@LLU: Digital Archive of Research, Scholarship & Creative Works. For more information, please contact [email protected]. LOMA LINDA UNIVERSITY School of Science and Technology in conjunction with the Faculty of Graduate Studies ____________________ Factors Affecting Phytoplankton Biodiversity and Toxin Production by Tracey Magrann ____________________ A Dissertation submitted in partial satisfaction of the requirements for the degree of Doctor of Philosophy in Biology ____________________ June 2011 © 2011 Tracey Magrann All Rights Reserved Each person whose signature appears below certifies that this dissertation in his opinion is adequate, in scope and quality, as a dissertation for the degree Doctor of Philosophy. , Chairperson Stephen G. Dunbar, Associate Professor of Biology Danilo S. Boskovic, Assistant Professor of Biochemistry, School of Medicine H. Paul Buchheim, Professor of Geology William K. Hayes, Professor of Biology Kevin E. Nick, Associate Professor of Geology iii ACKNOWLEDGEMENTS I would like to express my deepest gratitude to Dr. -
Genomic Adaptations of the Green Alga Dunaliella Salina to Life Under High Salinity
Genomic adaptations of the green alga Dunaliella salina to life under high salinity. Jürgen E.W. Polle1,2,3* Sara Calhoun3 Zaid McKie-Krisberg1,4 Simon Prochnik3,5 Peter Neofotis6 Won C. Yim7 Leyla T. Hathwaik7 Jerry Jenkins3,8 Henrik Molina9 Jakob Bunkenborg10 Igor GrigorieV3,11 Kerrie Barry3 Jeremy Schmutz3,8 EonSeon Jin12 John C. Cushman7 Jon K. Magnusson13 1Department of Biology, Brooklyn College of the City UniVersity of New York, Brooklyn, NY 11210, USA 2The Graduate Center of the City UniVersity of New York, New York, NY 10016 USA 3U.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA 4Current address: Department of Information SerVices and Technology, SUNY Downstate Health Sciences UniVersity, Brooklyn, NY 11203, USA 5Current address: MBP Titan LLC, South San Francisco, CA 94080, USA 6Current address: U.S. Department of Energy – Plant Research Laboratory, Michigan State UniVersity, East Lansing, MI, 48824 USA 7UniVersity of NeVada, Department of Biochemistry and Molecular Biology, Reno, NeVada, USA 8HudsonAlpha Institute for Biotechnology, HuntsVille, Alabama, USA 9The Proteomics Resource Center, The Rockefeller UniVersity, New York, New York, USA 10Alphalyse A/S, Odense, Denmark 11Department of Plant and Microbial Biology, UniVersity of California - Berkeley, 111 Koshland Hall, Berkeley, CA 94720, USA 12Department of Life Science, Hanyang UniVersity, Research Institute for Natural Sciences, Seoul, Republic of Korea 13Pacific Northwest National Laboratory, Richland, Washington, USA * Corresponding author: Dr. Jürgen E.W. Polle, [email protected] 1 Abstract Life in high salinity enVironments poses challenges to cells in a Variety of ways: maintenance of ion homeostasis and nutrient acquisition, often while concomitantly enduring saturating irradiances. -
Biodiversity
BIODIVERSITY Edited by Adriano Sofo Biodiversity Edited by Adriano Sofo Published by InTech Janeza Trdine 9, 51000 Rijeka, Croatia Copyright © 2011 InTech All chapters are Open Access articles distributed under the Creative Commons Non Commercial Share Alike Attribution 3.0 license, which permits to copy, distribute, transmit, and adapt the work in any medium, so long as the original work is properly cited. After this work has been published by InTech, authors have the right to republish it, in whole or part, in any publication of which they are the author, and to make other personal use of the work. Any republication, referencing or personal use of the work must explicitly identify the original source. Statements and opinions expressed in the chapters are these of the individual contributors and not necessarily those of the editors or publisher. No responsibility is accepted for the accuracy of information contained in the published articles. The publisher assumes no responsibility for any damage or injury to persons or property arising out of the use of any materials, instructions, methods or ideas contained in the book. Publishing Process Manager Dragana Manestar Technical Editor Teodora Smiljanic Cover Designer Jan Hyrat Image Copyright Peter Leahy, 2010. Used under license from Shutterstock.com First published September, 2011 Printed in Croatia A free online edition of this book is available at www.intechopen.com Additional hard copies can be obtained from [email protected] Biodiversity, Edited by Adriano Sofo p. cm. ISBN 978-953-307-715-4 free online editions of InTech Books and Journals can be found at www.intechopen.com Contents Preface VII Part 1 Ecosystem-Level Biodiversity 1 Chapter 1 Integrating Spatial Behavioral Ecology in Agent-Based Models for Species Conservation 3 Christina A.D. -
Impacts of Beach Nourishment on Loggerhead and Green Turtles In
A Comparative Study of the Evolution of Multicellularity in the Volvocales Matthew D. Herron and Richard E. Michod Department of Ecology and Evolutionary Biology, University of Arizona Abstract: The volvocine algae (Volvox and its close relatives) represent a Figure 1. Subset of volvocine species: (A) Chlamydomonas Conclusions: unique opportunity for the study of origins of multicellularity. Several major reinhardtii – one undifferentiated • Single origin of coloniality, no evidence of reversal to unicellular cell, (B) Gonium pectorale –a evolutionary transitions have occurred within this relatively young group, clump of 8 undifferentiated cells, condition. which spans a large range of sizes and several levels of complexity. To (C) Eudorina elegans – a spherical colony of 32 undifferentiated cells, • Most recent common ancestor of the Goniaceae and explore the historical and adaptive bases of these major evolutionary (D) Pleodorina californica –a Volvocaceae was likely 16- or 32-celled. transitions, we inferred phylogenetic relationships in the colonial volvocine spherical colony of 32 cells of which a few are terminally • At least four independent origins of large size (>32 cells), with at algae using DNA sequence data. Using maximum parsimony differentiated, (E) Volvox carteri –a spherical colony of up to 4000 least two reductions in cell number. reconstructions of ancestral character states, we traced the evolution of terminally differentiated somatic key innovations such as coloniality, large size, cellular differentiation, and cells and a few specialized • At least three separate origins of germ-soma differentiation reproductive cells, and (F) Volvox novel developmental programs. aureus – a spherical colony of up (partial or complete). to 2000 undifferentiated cells and a • One possible reversal from complete to partial differentiation.