Doushantuo Formation): an Ediacaran Window on Soft-Bodied and Multicellular Microorganisms
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Use of Phosphate Solubilizing Bacteria to Leach Rare Earth Elements from Monazite-Bearing Ore
Minerals 2015, 5, 189-202; doi:10.3390/min5020189 OPEN ACCESS minerals ISSN 2075-163X www.mdpi.com/journal/minerals Article Use of Phosphate Solubilizing Bacteria to Leach Rare Earth Elements from Monazite-Bearing Ore Doyun Shin 1,2,*, Jiwoong Kim 1, Byung-su Kim 1,2, Jinki Jeong 1,2 and Jae-chun Lee 1,2 1 Mineral Resources Resource Division, Korea Institute of Geoscience and Mineral Resources (KIGAM), Gwahangno 124, Yuseong-gu, Daejeon 305-350, Korea; E-Mails: [email protected] (J.K.); [email protected] (B.K.); [email protected] (J.J.); [email protected] (J.L.) 2 Department of Resource Recycling Engineering, Korea University of Science and Technology, Gajeongno 217, Yuseong-gu, Daejeon 305-350, Korea * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel.: +82-42-868-3616. Academic Editor: Anna H. Kaksonen Received: 8 January 2015 / Accepted: 27 March 2015 / Published: 2 April 2015 Abstract: In the present study, the feasibility to use phosphate solubilizing bacteria (PSB) to develop a biological leaching process of rare earth elements (REE) from monazite-bearing ore was determined. To predict the REE leaching capacity of bacteria, the phosphate solubilizing abilities of 10 species of PSB were determined by halo zone formation on Reyes minimal agar media supplemented with bromo cresol green together with a phosphate solubilization test in Reyes minimal liquid media as the screening studies. Calcium phosphate was used as a model mineral phosphate. Among the test PSB strains, Pseudomonas fluorescens, P. putida, P. rhizosphaerae, Mesorhizobium ciceri, Bacillus megaterium, and Acetobacter aceti formed halo zones, with the zone of A. -
Prebiological Evolution and the Metabolic Origins of Life
Prebiological Evolution and the Andrew J. Pratt* Metabolic Origins of Life University of Canterbury Keywords Abiogenesis, origin of life, metabolism, hydrothermal, iron Abstract The chemoton model of cells posits three subsystems: metabolism, compartmentalization, and information. A specific model for the prebiological evolution of a reproducing system with rudimentary versions of these three interdependent subsystems is presented. This is based on the initial emergence and reproduction of autocatalytic networks in hydrothermal microcompartments containing iron sulfide. The driving force for life was catalysis of the dissipation of the intrinsic redox gradient of the planet. The codependence of life on iron and phosphate provides chemical constraints on the ordering of prebiological evolution. The initial protometabolism was based on positive feedback loops associated with in situ carbon fixation in which the initial protometabolites modified the catalytic capacity and mobility of metal-based catalysts, especially iron-sulfur centers. A number of selection mechanisms, including catalytic efficiency and specificity, hydrolytic stability, and selective solubilization, are proposed as key determinants for autocatalytic reproduction exploited in protometabolic evolution. This evolutionary process led from autocatalytic networks within preexisting compartments to discrete, reproducing, mobile vesicular protocells with the capacity to use soluble sugar phosphates and hence the opportunity to develop nucleic acids. Fidelity of information transfer in the reproduction of these increasingly complex autocatalytic networks is a key selection pressure in prebiological evolution that eventually leads to the selection of nucleic acids as a digital information subsystem and hence the emergence of fully functional chemotons capable of Darwinian evolution. 1 Introduction: Chemoton Subsystems and Evolutionary Pathways Living cells are autocatalytic entities that harness redox energy via the selective catalysis of biochemical transformations. -
The Ediacaran Frondose Fossil Arborea from the Shibantan Limestone of South China
Journal of Paleontology, 94(6), 2020, p. 1034–1050 Copyright © 2020, The Paleontological Society. This is an Open Access article, distributed under the terms of the Creative Commons Attribution licence (http://creativecommons.org/ licenses/by/4.0/), which permits unrestricted re-use, distribution, and reproduction in any medium, provided the original work is properly cited. 0022-3360/20/1937-2337 doi: 10.1017/jpa.2020.43 The Ediacaran frondose fossil Arborea from the Shibantan limestone of South China Xiaopeng Wang,1,3 Ke Pang,1,4* Zhe Chen,1,4* Bin Wan,1,4 Shuhai Xiao,2 Chuanming Zhou,1,4 and Xunlai Yuan1,4,5 1State Key Laboratory of Palaeobiology and Stratigraphy, Nanjing Institute of Geology and Palaeontology and Center for Excellence in Life and Palaeoenvironment, Chinese Academy of Sciences, Nanjing 210008, China <[email protected]><[email protected]> <[email protected]><[email protected]><[email protected]><[email protected]> 2Department of Geosciences, Virginia Tech, Blacksburg, Virginia 24061, USA <[email protected]> 3University of Science and Technology of China, Hefei 230026, China 4University of Chinese Academy of Sciences, Beijing 100049, China 5Center for Research and Education on Biological Evolution and Environment, Nanjing University, Nanjing 210023, China Abstract.—Bituminous limestone of the Ediacaran Shibantan Member of the Dengying Formation (551–539 Ma) in the Yangtze Gorges area contains a rare carbonate-hosted Ediacara-type macrofossil assemblage. This assemblage is domi- nated by the tubular fossil Wutubus Chen et al., 2014 and discoidal fossils, e.g., Hiemalora Fedonkin, 1982 and Aspidella Billings, 1872, but frondose organisms such as Charnia Ford, 1958, Rangea Gürich, 1929, and Arborea Glaessner and Wade, 1966 are also present. -
Discovery, Metabolism and Functions of NAD and NADP
Coenzymes Features Discovery, metabolism and functions of NAD Downloaded from http://portlandpress.com/biochemist/article-pdf/37/1/9/3189/bio037010009.pdf by guest on 01 October 2021 and NADP Magali R. VanLinden, Renate Hvidsten Skoge and Mathias Ziegler (University of Bergen, Norway) Nicotinamide adenine dinucleotide (NAD) and nicotinamide adenine dinucleotide phosphate (NADP) are two major players in metabolism as they participate as electron carriers in a multitude of redox reactions. Moreover, they act in life and death decisions on a cellular level in all known life forms. NAD and NADP both exist in two states; the oxidized forms are characterized by a positive charge on the nicotinamide (Nam) moiety, denoted NAD+ and NADP+ respectively. The reduced forms are denoted NADH and NADPH (Figure 1). The independent discoveries of NAD(P) as vitamins and co-enzymes Vitamin B3 is a collective term for the two NAD(P) precursors nicotinic acid (NA) (also referred to as niacin) and Nam, as well as their corresponding ribosides. Niacin and Nam were found to be essential nutrients after severe outbreaks of pellagra (originally thought to be a new pestilence) in 18th Century Europe. Large outbreaks of pellagra occurred in North America in the early 20th Century. Pellagra (from Italian: pelle = skin; agra = sour) is characterized by dermatitis, diarrhoea, dementia and ultimately death, and was widespread in the hundreds of thousands of poor people living on a diet mostly composed of corn or maize flour. Although successfully consumed by American Indians for centuries, degerminated maize does not contain niacin in a bioavailable form. The crucial difference was that Figure 1. -
Integrative and Comparative Biology Integrative and Comparative Biology, Volume 58, Number 4, Pp
Integrative and Comparative Biology Integrative and Comparative Biology, volume 58, number 4, pp. 605–622 doi:10.1093/icb/icy088 Society for Integrative and Comparative Biology SYMPOSIUM INTRODUCTION The Temporal and Environmental Context of Early Animal Evolution: Considering All the Ingredients of an “Explosion” Downloaded from https://academic.oup.com/icb/article-abstract/58/4/605/5056706 by Stanford Medical Center user on 15 October 2018 Erik A. Sperling1 and Richard G. Stockey Department of Geological Sciences, Stanford University, 450 Serra Mall, Building 320, Stanford, CA 94305, USA From the symposium “From Small and Squishy to Big and Armored: Genomic, Ecological and Paleontological Insights into the Early Evolution of Animals” presented at the annual meeting of the Society for Integrative and Comparative Biology, January 3–7, 2018 at San Francisco, California. 1E-mail: [email protected] Synopsis Animals originated and evolved during a unique time in Earth history—the Neoproterozoic Era. This paper aims to discuss (1) when landmark events in early animal evolution occurred, and (2) the environmental context of these evolutionary milestones, and how such factors may have affected ecosystems and body plans. With respect to timing, molecular clock studies—utilizing a diversity of methodologies—agree that animal multicellularity had arisen by 800 million years ago (Ma) (Tonian period), the bilaterian body plan by 650 Ma (Cryogenian), and divergences between sister phyla occurred 560–540 Ma (late Ediacaran). Most purported Tonian and Cryogenian animal body fossils are unlikely to be correctly identified, but independent support for the presence of pre-Ediacaran animals is recorded by organic geochemical biomarkers produced by demosponges. -
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Dorjnamjaa et al. Mongolian Geoscientist 49 (2019) 41-49 https://doi.org/10.5564/mgs.v0i49.1226 Mongolian Geoscientist Review paper New scientific direction of the bacterial paleontology in Mongolia: an essence of investigation * Dorj Dorjnamjaa , Gundsambuu Altanshagai, Batkhuyag Enkhbaatar Department of Paleontology, Institute of Paleontology, Mongolian Academy of Sciences, Ulaanbaatar 15160, Mongolia *Corresponding author. Email: [email protected] ARTICLE INFO ABSTRACT Article history: We review the initial development of Bacterial Paleontology in Mongolia and Received 10 September 2019 present some electron microscopic images of fossil bacteria in different stages of Accepted 9 October 2019 preservation in sedimentary rocks. Indeed bacterial paleontology is one the youngest branches of paleontology. It has began in the end of 20th century and has developed rapidly in recent years. The main tasks of bacterial paleontology are detailed investigation of fossil microorganisms, in particular their morphology and sizes, conditions of burial and products of habitation that are reflected in lithological and geochemical features of rocks. Bacterial paleontology deals with fossil materials and is useful in analysis of the genesis of sedimentary rocks, and sedimentary mineral resources including oil and gas. The traditional paleontology is especially significant for evolution theory, biostratigraphy, biogeography and paleoecology; however bacterial paleontology is an essential first of all for sedimentology and for theories sedimentary ore genesis or biometallogeny Keywords: microfossils, phosphorite, sedimentary rocks, lagerstatten, biometallogeny INTRODUCTION all the microorganisms had lived and propagated Bacteria or microbes preserved well as fossils in without breakdowns. Bacterial paleontological various rocks, especially in sedimentary rocks data accompanied by the data on the first origin alike natural substances. -
Ctenophore Relationships and Their Placement As the Sister Group to All Other Animals
ARTICLES DOI: 10.1038/s41559-017-0331-3 Ctenophore relationships and their placement as the sister group to all other animals Nathan V. Whelan 1,2*, Kevin M. Kocot3, Tatiana P. Moroz4, Krishanu Mukherjee4, Peter Williams4, Gustav Paulay5, Leonid L. Moroz 4,6* and Kenneth M. Halanych 1* Ctenophora, comprising approximately 200 described species, is an important lineage for understanding metazoan evolution and is of great ecological and economic importance. Ctenophore diversity includes species with unique colloblasts used for prey capture, smooth and striated muscles, benthic and pelagic lifestyles, and locomotion with ciliated paddles or muscular propul- sion. However, the ancestral states of traits are debated and relationships among many lineages are unresolved. Here, using 27 newly sequenced ctenophore transcriptomes, publicly available data and methods to control systematic error, we establish the placement of Ctenophora as the sister group to all other animals and refine the phylogenetic relationships within ctenophores. Molecular clock analyses suggest modern ctenophore diversity originated approximately 350 million years ago ± 88 million years, conflicting with previous hypotheses, which suggest it originated approximately 65 million years ago. We recover Euplokamis dunlapae—a species with striated muscles—as the sister lineage to other sampled ctenophores. Ancestral state reconstruction shows that the most recent common ancestor of extant ctenophores was pelagic, possessed tentacles, was bio- luminescent and did not have separate sexes. Our results imply at least two transitions from a pelagic to benthic lifestyle within Ctenophora, suggesting that such transitions were more common in animal diversification than previously thought. tenophores, or comb jellies, have successfully colonized from species across most of the known phylogenetic diversity of nearly every marine environment and can be key species in Ctenophora. -
Palaeobiology of the Early Ediacaran Shuurgat Formation, Zavkhan Terrane, South-Western Mongolia
Journal of Systematic Palaeontology ISSN: 1477-2019 (Print) 1478-0941 (Online) Journal homepage: http://www.tandfonline.com/loi/tjsp20 Palaeobiology of the early Ediacaran Shuurgat Formation, Zavkhan Terrane, south-western Mongolia Ross P. Anderson, Sean McMahon, Uyanga Bold, Francis A. Macdonald & Derek E. G. Briggs To cite this article: Ross P. Anderson, Sean McMahon, Uyanga Bold, Francis A. Macdonald & Derek E. G. Briggs (2016): Palaeobiology of the early Ediacaran Shuurgat Formation, Zavkhan Terrane, south-western Mongolia, Journal of Systematic Palaeontology, DOI: 10.1080/14772019.2016.1259272 To link to this article: http://dx.doi.org/10.1080/14772019.2016.1259272 Published online: 20 Dec 2016. Submit your article to this journal Article views: 48 View related articles View Crossmark data Full Terms & Conditions of access and use can be found at http://www.tandfonline.com/action/journalInformation?journalCode=tjsp20 Download by: [Harvard Library] Date: 31 January 2017, At: 11:48 Journal of Systematic Palaeontology, 2016 http://dx.doi.org/10.1080/14772019.2016.1259272 Palaeobiology of the early Ediacaran Shuurgat Formation, Zavkhan Terrane, south-western Mongolia Ross P. Anderson a*,SeanMcMahona,UyangaBoldb, Francis A. Macdonaldc and Derek E. G. Briggsa,d aDepartment of Geology and Geophysics, Yale University, 210 Whitney Avenue, New Haven, Connecticut, 06511, USA; bDepartment of Earth Science and Astronomy, The University of Tokyo, 3-8-1 Komaba, Meguro, Tokyo, 153-8902, Japan; cDepartment of Earth and Planetary Sciences, Harvard University, 20 Oxford Street, Cambridge, Massachusetts, 02138, USA; dPeabody Museum of Natural History, Yale University, 170 Whitney Avenue, New Haven, Connecticut, 06511, USA (Received 4 June 2016; accepted 27 September 2016) Early diagenetic chert nodules and small phosphatic clasts in carbonates from the early Ediacaran Shuurgat Formation on the Zavkhan Terrane of south-western Mongolia preserve diverse microfossil communities. -
Dornbos.Web.CV
Stephen Quinn Dornbos Associate Professor and Department Chair Department of Geosciences University of Wisconsin-Milwaukee Milwaukee, WI 53201-0413 Phone: (414) 229-6630 Fax: (414) 229-5452 E-mail: [email protected] http://uwm.edu/geosciences/people/dornbos-stephen/ EDUCATION 2003 Ph.D., Geological Sciences, University of Southern California, Los Angeles, CA. 1999 M.S., Geological Sciences, University of Southern California, Los Angeles, CA. 1997 B.A., Geology, The College of Wooster, Wooster, OH. ADDITIONAL EDUCATION 2002 University of Washington, Summer Marine Invertebrate Zoology Course, Friday Harbor Laboratories. 1997 Louisiana State University, Summer Field Geology Course. PROFESSIONAL EXPERIENCE 2017-Present Department Chair, Department of Geosciences, University of Wisconsin-Milwaukee. 2010-Present Associate Professor, Department of Geosciences, University of Wisconsin-Milwaukee. 2004-2010 Assistant Professor, Department of Geosciences, University of Wisconsin-Milwaukee. 2012-Present Adjunct Curator, Geology Department, Milwaukee Public Museum. 2004-Present Curator, Greene Geological Museum, University of Wisconsin- Milwaukee. 2003-2004 Postdoctoral Research Fellow, Department of Earth Sciences, University of Southern California. 2002 Research Assistant, Invertebrate Paleontology Department, Natural History Museum of Los Angeles County. EDITORIAL POSITIONS 2017-Present Editorial Board, Heliyon. 2015-Present Board of Directors, Coquina Press. 2014-Present Commentaries Editor, Palaeontologia Electronica. 2006-Present Associate Editor, Palaeontologia Electronica. Curriculum Vitae – Stephen Q. Dornbos 2 RESEARCH INTERESTS 1) Evolution and preservation of early life on Earth. 2) Evolutionary paleoecology of early animals during the Cambrian radiation. 3) Geobiology of microbial structures in Precambrian–Cambrian sedimentary rocks. 4) Cambrian reef evolution, paleoecology, and extinction. 5) Exceptional fossil preservation. HONORS AND AWARDS 2013 UWM Authors Recognition Ceremony. 2011 Full Member, Sigma Xi. -
Geobiological Events in the Ediacaran Period
Geobiological Events in the Ediacaran Period Shuhai Xiao Department of Geosciences, Virginia Tech, Blacksburg, VA 24061, USA NSF; NASA; PRF; NSFC; Virginia Tech Geobiology Group; CAS; UNLV; UCR; ASU; UMD; Amherst; Subcommission of Neoproterozoic Stratigraphy; 1 Goals To review biological (e.g., acanthomorphic acritarchs; animals; rangeomorphs; biomineralizing animals), chemical (e.g., carbon and sulfur isotopes, oxygenation of deep oceans), and climatic (e.g., glaciations) events in the Ediacaran Period; To discuss integration and future directions in Ediacaran geobiology; 2 Knoll and Walter, 1992 • Acanthomorphic acritarchs in early and Ediacara fauna in late Ediacaran Period; • Strong carbon isotope variations; • Varanger-Laplandian glaciation; • What has happened since 1992? 3 Age Constraints: South China (538.2±1.5 Ma) 541 Ma Cambrian Dengying Ediacaran Sinian 551.1±0.7 Ma Doushantuo 632.5±0.5 Ma 635 Ma 635.2±0.6 Ma Nantuo (Tillite) 636 ± 5Ma Cryogenian Nanhuan 654 ± 4Ma Datangpo 663±4 Ma Neoproterozoic Neoproterozoic Jiangkou Group Banxi Group 725±10 Ma Tonian Qingbaikouan 1000 Ma • South China radiometric ages: Condon et al., 2005; Hoffmann et al., 2004; Zhou et al., 2004; Bowring et al., 2007; S. Zhang et al., 2008; Q. Zhang et al., 2008; • Additional ages from Nama Group (Namibia), Conception Group (Newfoundland), and Vendian (White Sea); 4 The Ediacaran Period Ediacara fossils Cambrian 545 Ma Nama assemblage 555 Ma White Sea assemblage 565 Ma Avalon assemblage 575 Ma 585 Ma Doushantuo biota 595 Ma 605 Ma Ediacaran Period 615 Ma -
Cambrian Small Bilaterian Fossils from 40 to 55 Million Years Before
Supporting Online Material Systematic Paleontology Genus Vernanimalcula gen. et sp. nov. Etymology: Generic name denotes (from Latin) small spring animal (i.e., after Snowball Earth winter). Diagnosis: Small triploblastic bilaterian animal (about 120-180 microns in length), with an oval-shaped dorsal view. The alimentary canal is differentiated into a pharynx, which is muscular and multi-layered (three, possibly four single cell layers), running anterior- posterior with a collared mouth situating ventrally near anterior margin of the body. The pharynx opens into an expanded stomach/intestine, which terminates at the posterior end with an anus. Alimentary canal is flanked by paired coeloms, which are bounded with single-cell mesodermal layers. Externally the mesodermal layers are covered with ectoderm layers and internally they abut the endodermal wall of the alimentary tract. The body is convex dorsally and there are at least three pits on each side of the outer surface. These pits are floored with small cells. The ventral surface is interpreted to be flat. Type species: Vernanimalcula guizhouena gen. et sp. nov. (Fig. 1 A; Table 1). Etymology: Specific name refers to Guizhou Province, where the fossils came from. Holotype: The holotype represents a complete animal preserved; the section runs nearly parallel to the ventral surface of the animal. Material: Five specimens, all of which are nearly complete. Specimen numbers are given in Table 1. Diagnosis: Same as the generic diagnosis. This and the other specimens described are housed at the Early Life Research Center in Chengjiang, Yunnan, China. Locality and Stratigraphy: Badoushan, Weng'an County, Central Guizhou; from ~2-m- thick basal black bituminous phosphorite layer of the Precambrian lower Weng'an Phosphate Member, Doushantuo Formation. -
“Modern-Type Plate Tectonics”?
SILEIR RA A D B E E G D E A O D L Special Session, “A tribute to Edilton Santos, a leader in Precambrian O E I G C I A Geology in Northeastern Brazil”, edited by A.N. Sial and V.P. Ferreira O BJGEO S DOI: 10.1590/2317-4889202020190095 Brazilian Journal of Geology D ESDE 1946 Dawn of metazoans: to what extent was this influenced by the onset of “modern-type plate tectonics”? Umberto G. Cordani1* , Thomas R. Fairchild1 , Carlos E. Ganade1 , Marly Babinski1 , Juliana de Moraes Leme1 Abstract The appearance of complex megascopic multicellular eukaryotes in the Ediacaran occurred just when the dynamics of a cooling Earth allowed establishment of a new style of global tectonics that continues to the present as “modern-type plate tectonics”. The advent of this style was first registered in 620 Ma-old coesite-bearing Ultra-High Pressure eclogites within the Transbrasiliano-Kandi mega-shear zone along the site of the West Gondwana Orogeny (WGO). These eclogites comprise the oldest evidence of slab-pull deep subduction capable of inducing con- tinental collisions and producing high-relief Himalayan-type mega-mountains. Life, prior to this time, was essentially microscopic. Yet with increasing Neoproterozoic oxygenation and intensified influx of nutrients to Ediacaran oceans, resulting from the erosion of these mountains, complex macroscopic heterotrophic eukaryotes arose and diversified, taking the biosphere to a new evolutionary threshold. The repeated elevation of Himalayan-type mega-mountains ever since then has continued to play a fundamental role in nutrient supply and biosphere evolution. Other authors have alluded to the influence of Gondwana mountain-building upon Ediacaran evolution, however we claim here to have identified when and where it began.