A Without Prejudice List of Generic Names of Fungi for Protection Under
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<I>Sarcoporia Polyspora</I>
ISSN (print) 0093-4666 © 2015. Mycotaxon, Ltd. ISSN (online) 2154-8889 MYCOTAXON http://dx.doi.org/10.5248/130.279 Volume 130, pp. 279–287 January–March 2015 Geographic distribution of Sarcoporia polyspora and S. longitubulata sp. nov. Josef Vlasák1*, Josef Vlasák Jr., Juha Kinnunen2, & Viacheslav Spirin2 1Biol. Centre of the Academy of Sciences of the Czech Republic, Branišovská 31, CZ-370 05 České Budějovice, Czech Rep. 2Botanical Museum, P.O. Box 7, FI-00014 University of Helsinki, Finland * Correspondence to: [email protected] Abstract — DNA study of Sarcoporia polyspora (= Parmastomyces transmutans) revealed only negligible sequence differences between conifer-dwelling specimens with cartilaginous layer in the context from USA, Brazil, Europe, and Far East Asia, but a very different sequence from three resupinate and hardwood-bound collections without such a layer and with slightly narrower and pale brown spores from USA and Madeira Islands. This fungus, found also among historical USA collections of S. polyspora in the BPI herbarium, is described here as Sarcoporia longitubulata. The phylogenetic position ofSarcoporia is discussed. Key words — Basidiomycota, brown rot fungi, molecular taxonomy, Parmastomyces kravtzevianus Introduction Sarcoporia polyspora P. Karst. is a very distinct, brown-rot polypore with soft, resupinate to effused-reflexed basidiomes that are white to crème at first but turn reddish-brown after bruising or drying. It can be easily recognized by its ellipsoid and thick-walled, dextrinoid spores, which are quite unique in polypores. The species is rare in Europe but rather common in North America (on Tsuga spp. and Pinus spp.) and in Asia (Vlasák & Kout 2010, Dai 2012). -
Axpcoords & Parallel Axparafit: Statistical Co-Phylogenetic Analyses
BMC Bioinformatics BioMed Central Software Open Access AxPcoords & parallel AxParafit: statistical co-phylogenetic analyses on thousands of taxa Alexandros Stamatakis*1,2, Alexander F Auch3, Jan Meier-Kolthoff3 and Markus Göker4 Address: 1École Polytechnique Fédérale de Lausanne, School of Computer & Communication Sciences, Laboratory for Computational Biology and Bioinformatics STATION 14, CH-1015 Lausanne, Switzerland, 2Swiss Institute of Bioinformatics, 3Center for Bioinformatics (ZBIT), Sand 14, Tübingen, University of Tübingen, Germany and 4Organismic Botany/Mycology, Auf der Morgenstelle 1, Tübingen, University of Tübingen, Germany Email: Alexandros Stamatakis* - [email protected]; Alexander F Auch - [email protected]; Jan Meier- Kolthoff - [email protected]; Markus Göker - [email protected] * Corresponding author Published: 22 October 2007 Received: 26 June 2007 Accepted: 22 October 2007 BMC Bioinformatics 2007, 8:405 doi:10.1186/1471-2105-8-405 This article is available from: http://www.biomedcentral.com/1471-2105/8/405 © 2007 Stamatakis et al.; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Abstract Background: Current tools for Co-phylogenetic analyses are not able to cope with the continuous accumulation of phylogenetic data. The sophisticated statistical test for host-parasite co-phylogenetic analyses implemented in Parafit does not allow it to handle large datasets in reasonable times. The Parafit and DistPCoA programs are the by far most compute-intensive components of the Parafit analysis pipeline. -
Lichenicolous Biota (Nos 201–230)
ZOBODAT - www.zobodat.at Zoologisch-Botanische Datenbank/Zoological-Botanical Database Digitale Literatur/Digital Literature Zeitschrift/Journal: Fritschiana Jahr/Year: 2015 Band/Volume: 80 Autor(en)/Author(s): Hafellner Josef Artikel/Article: Lichenicolous Biota (Nos 201-230) 21-41 - 21 - Lichenicolous Biota (Nos 201–230) Josef HAFELLNER* HAFELLNER Josef 2015: Lichenicolous Biota (Nos 201–230). – Frit- schiana (Graz) 80: 21–41. - ISSN 1024-0306. Abstract: The 9th fascicle (30 numbers) of the exsiccata 'Lichenicolous Biota' is published. The issue contains ma- terial of 20 non-lichenized fungal taxa (14 teleomorphs of ascomycetes, 4 anamorphic states of ascomycetes, 2 an- amorphic states of basidiomycetes) and 9 lichenized as- comycetes, including paratype material of Dimelaena li- chenicola K.Knudsen et al. (no 223), Miriquidica invadens Hafellner et al. (no 226, 227), and Stigmidium xantho- parmeliarum Hafellner (no 210). Furthermore, collections of the type species of the following genera are distributed: Illosporiopsis (I. christiansenii), Illosporium (I. carneum), Marchandiomyces (M. corallinus), Marchandiobasidium (M. aurantiacum, sub Erythricium aurantiacum), Micro- calicium (M. disseminatum), Nigropuncta (N. rugulosa), Paralecanographa (P. grumulosa), Phaeopyxis (P. punc- tum), Placocarpus (P. schaereri), Rhagadostoma (R. li- chenicola), and Stigmidium (S. schaereri). *Institut für Pflanzenwissenschaften, NAWI Graz, Karl-Franzens-Universität, Holteigasse 6, 8010 Graz, AUSTRIA e-mail: [email protected] Introduction The exsiccata 'Lichenicolous Biota' is continued with fascicle 9, containing 30 numbers. The exsiccata covers all lichenicolous biota, i.e., it is open not only to non- lichenized and lichenized fungi, but also to myxomycetes, bacteria, and even animals, whenever they cause a characteristic symptom on their host (e.g. discoloration or galls). -
Opuscula Philolichenum, 6: 1-XXXX
Opuscula Philolichenum, 15: 56-81. 2016. *pdf effectively published online 25July2016 via (http://sweetgum.nybg.org/philolichenum/) Lichens, lichenicolous fungi, and allied fungi of Pipestone National Monument, Minnesota, U.S.A., revisited M.K. ADVAITA, CALEB A. MORSE1,2 AND DOUGLAS LADD3 ABSTRACT. – A total of 154 lichens, four lichenicolous fungi, and one allied fungus were collected by the authors from 2004 to 2015 from Pipestone National Monument (PNM), in Pipestone County, on the Prairie Coteau of southwestern Minnesota. Twelve additional species collected by previous researchers, but not found by the authors, bring the total number of taxa known for PNM to 171. This represents a substantial increase over previous reports for PNM, likely due to increased intensity of field work, and also to the marked expansion of corticolous and anthropogenic substrates since the site was first surveyed in 1899. Reexamination of 116 vouchers deposited in MIN and the PNM herbarium led to the exclusion of 48 species previously reported from the site. Crustose lichens are the most common growth form, comprising 65% of the lichen diversity. Sioux Quartzite provided substrate for 43% of the lichen taxa collected. Saxicolous lichen communities were characterized by sampling four transects on cliff faces and low outcrops. An annotated checklist of the lichens of the site is provided, as well as a list of excluded taxa. We report 24 species (including 22 lichens and two lichenicolous fungi) new for Minnesota: Acarospora boulderensis, A. contigua, A. erythrophora, A. strigata, Agonimia opuntiella, Arthonia clemens, A. muscigena, Aspicilia americana, Bacidina delicata, Buellia tyrolensis, Caloplaca flavocitrina, C. lobulata, C. -
A New Species of Antrodia (Basidiomycota, Polypores) from China
Mycosphere 8(7): 878–885 (2017) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/8/7/4 Copyright © Guizhou Academy of Agricultural Sciences A new species of Antrodia (Basidiomycota, Polypores) from China Chen YY, Wu F* Institute of Microbiology, Beijing Forestry University, Beijing 100083, China Chen YY, Wu F 2017 –A new species of Antrodia (Basidiomycota, Polypores) from China. Mycosphere 8(7), 878–885, Doi 10.5943/mycosphere/8/7/4 Abstract A new species, Antrodia monomitica sp. nov., is described and illustrated from China based on morphological characters and molecular evidence. It is characterized by producing annual, fragile and nodulose basidiomata, a monomitic hyphal system with clamp connections on generative hyphae, hyaline, thin-walled and fusiform to mango-shaped basidiospores (6–7.5 × 2.3– 3 µm), and causing a typical brown rot. In phylogenetic analysis inferred from ITS and nLSU rDNA sequences, the new species forms a distinct lineage in the Antrodia s. l., and has a close relationship with A. oleracea. Key words – Fomitopsidaceae – phylogenetic analysis – taxonomy – wood-decaying fungi Introduction Antrodia P. Karst., typified with Polyporus serpens Fr. (=Antrodia albida (Fr.) Donk (Donk 1960, Ryvarden 1991), is characterized by a resupinate to effused-reflexed growth habit, white or pale colour of the context, a dimitic hyphal system with clamp connections on generative hyphae, hyaline, thin-walled, cylindrical to very narrow ellipsoid basidiospores which are negative in Melzer’s reagent and Cotton Blue, and causing a brown rot (Ryvarden & Melo 2014). Antrodia is a highly heterogeneous genus which is closely related to Fomitopsis P. -
Die Gattung Aspicilia, Ihre Ableitungen Nebst
Acta Botánica Malacitana, 16(1): 133-140 Malaga, 1991 DIE GAUG ASPICILIA, IE AEIUGE ES EMEKUGE OE CYOECAOIE ASCOCAOGAISAIO EI AEE GENERA E LECANORALES (ASCOMYCEES ICEISAI Josef HAFELLNER SUMMARY: Some evolutionary lines are shown within Aspicilia coll, and the taxonomical and nomenclatural consequences for species commonly classified in Sphaerothallia Nees are discussed. The generic rank (Lobothallia (Clauzade & Roux) Hafellner) is proposed for the Aspicilia radiosa group and the following new combinations are introduced: Lobothallia alphoplaca (Wahlenb. in Ach.)Haf., Lobothallia melanaspis (Ach.)Haf., Lobothallia praeradiosa (Nyl.)Haf. and Lobothallia radiosa (Hoffm.)Haf. Key words: Lichenized Ascomycetes, Aspicilia, Lobothallia, taxonomy. ZUSAMMENFASSUNG: Innerhalb der Gattung Aspicilia coll. werden einige Evolutionslinien aufgezeigt und taxonomische wie nomenklatorische Konsequenzen für gewtihnlich als Sphaerothallia Nees bezeichnete Arten werden diskutiert. Lobothallia (Clauzade & Roux) Hafellner wird in den Gattungsrang erhoben und folgende neue Kombinationen werden vorgeschlagen: Lobythallia alphoplaca (Wahlenb. in Ach) Haf., Lobothallia melanaspis (Ach) Haf., Lobothallia praeradiosa (NYL.) Haf. und Lobothallia radiosa (Hoffm.)Haf. Schltisselwórter: Licheniscerte Ascomyceten, Aspiclia, Lobothallia, Taxonomie. EINLEITUNG Der schon von Massalongo (1852) beschriebenen Gattung Aspicilia war emn wechselvolles Schicksal beschieden. Ober lange Zeit in Lecanora eingeschlossen und oft in dieser als Subgenus bewertet (z.B. Magnusson 1939, Poelt 1958, Eigler 1969), hat sich erst in jtingerer Zeit die Erkenntnis allgemein durchgesetzt, daB Aspicilia mit Lecanora nicht ndher verwandt ist (Poelt 1974, Roux 1977, Hawksworth & al. 1980, Santesson 1984, Clauzade & Roux 1984, 1987, Hafellner 1984, Esnault 1985), obwohl einige Autoren schon früh die Selbstdndigkeit betont hatten (z.B. Kürber 1855, Hue 1910, Choisy 1929). Poelt (1974) hat sogar die neue Familie Aspiciliaceae vorgeschlagen, urn die taxonomische Distanz zwischen Aspicilia und Lecanora augenfdllig zu machen. -
A Phylogenetic Overview of the Antrodia Clade (Basidiomycota, Polyporales)
Mycologia, 105(6), 2013, pp. 1391–1411. DOI: 10.3852/13-051 # 2013 by The Mycological Society of America, Lawrence, KS 66044-8897 A phylogenetic overview of the antrodia clade (Basidiomycota, Polyporales) Beatriz Ortiz-Santana1 phylogenetic studies also have recognized the genera Daniel L. Lindner Amylocystis, Dacryobolus, Melanoporia, Pycnoporellus, US Forest Service, Northern Research Station, Center for Sarcoporia and Wolfiporia as part of the antrodia clade Forest Mycology Research, One Gifford Pinchot Drive, (SY Kim and Jung 2000, 2001; Binder and Hibbett Madison, Wisconsin 53726 2002; Hibbett and Binder 2002; SY Kim et al. 2003; Otto Miettinen Binder et al. 2005), while the genera Antrodia, Botanical Museum, University of Helsinki, PO Box 7, Daedalea, Fomitopsis, Laetiporus and Sparassis have 00014, Helsinki, Finland received attention in regard to species delimitation (SY Kim et al. 2001, 2003; KM Kim et al. 2005, 2007; Alfredo Justo Desjardin et al. 2004; Wang et al. 2004; Wu et al. 2004; David S. Hibbett Dai et al. 2006; Blanco-Dios et al. 2006; Chiu 2007; Clark University, Biology Department, 950 Main Street, Worcester, Massachusetts 01610 Lindner and Banik 2008; Yu et al. 2010; Banik et al. 2010, 2012; Garcia-Sandoval et al. 2011; Lindner et al. 2011; Rajchenberg et al. 2011; Zhou and Wei 2012; Abstract: Phylogenetic relationships among mem- Bernicchia et al. 2012; Spirin et al. 2012, 2013). These bers of the antrodia clade were investigated with studies also established that some of the genera are molecular data from two nuclear ribosomal DNA not monophyletic and several modifications have regions, LSU and ITS. A total of 123 species been proposed: the segregation of Antrodia s.l. -
1307 Fungi Representing 1139 Infrageneric Taxa, 317 Genera and 66 Families ⇑ Jolanta Miadlikowska A, , Frank Kauff B,1, Filip Högnabba C, Jeffrey C
Molecular Phylogenetics and Evolution 79 (2014) 132–168 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families ⇑ Jolanta Miadlikowska a, , Frank Kauff b,1, Filip Högnabba c, Jeffrey C. Oliver d,2, Katalin Molnár a,3, Emily Fraker a,4, Ester Gaya a,5, Josef Hafellner e, Valérie Hofstetter a,6, Cécile Gueidan a,7, Mónica A.G. Otálora a,8, Brendan Hodkinson a,9, Martin Kukwa f, Robert Lücking g, Curtis Björk h, Harrie J.M. Sipman i, Ana Rosa Burgaz j, Arne Thell k, Alfredo Passo l, Leena Myllys c, Trevor Goward h, Samantha Fernández-Brime m, Geir Hestmark n, James Lendemer o, H. Thorsten Lumbsch g, Michaela Schmull p, Conrad L. Schoch q, Emmanuël Sérusiaux r, David R. Maddison s, A. Elizabeth Arnold t, François Lutzoni a,10, Soili Stenroos c,10 a Department of Biology, Duke University, Durham, NC 27708-0338, USA b FB Biologie, Molecular Phylogenetics, 13/276, TU Kaiserslautern, Postfach 3049, 67653 Kaiserslautern, Germany c Botanical Museum, Finnish Museum of Natural History, FI-00014 University of Helsinki, Finland d Department of Ecology and Evolutionary Biology, Yale University, 358 ESC, 21 Sachem Street, New Haven, CT 06511, USA e Institut für Botanik, Karl-Franzens-Universität, Holteigasse 6, A-8010 Graz, Austria f Department of Plant Taxonomy and Nature Conservation, University of Gdan´sk, ul. Wita Stwosza 59, 80-308 Gdan´sk, Poland g Science and Education, The Field Museum, 1400 S. -
(12) Patent Application Publication (10) Pub. No.: US 2009/0005340 A1 Kristiansen (43) Pub
US 20090005340A1 (19) United States (12) Patent Application Publication (10) Pub. No.: US 2009/0005340 A1 Kristiansen (43) Pub. Date: Jan. 1, 2009 54) BOACTIVE AGENTS PRODUCED BY 3O Foreigngn AppApplication PrioritVty Data SUBMERGED CULTIVATION OFA BASDOMYCETE CELL Jun. 15, 2005 (DK) ........................... PA 2005 OO881 Jan. 25, 2006 (DK)........................... PA 2006 OO115 (75) Inventor: Bjorn Kristiansen, Frederikstad Publication Classification (NO)NO (51) Int. Cl. Correspondence Address: A 6LX 3L/75 (2006.01) BROWDY AND NEIMARK, P.L.L.C. CI2P I/02 (2006.01) 624 NINTH STREET, NW A6IP37/00 (2006.01) SUTE 300 CI2P 19/04 (2006.01) WASHINGTON, DC 20001-5303 (US) (52) U.S. Cl. ............................ 514/54:435/171; 435/101 (57) ABSTRACT (73) Assignee: MediMush A/S, Horsholm (DK) - The invention in one aspect is directed to a method for culti (21) Appl. No.: 11/917,516 Vating a Basidiomycete cell in liquid culture medium, said method comprising the steps of providing a Basidiomycete (22) PCT Filed: Jun. 14, 2006 cell capable of being cultivated in a liquid growth medium, e - rs and cultivating the Basidiomycete cell under conditions (86). PCT No.: PCT/DK2OO6/OOO340 resulting in the production intracellularly or extracellularly of one or more bioactive agent(s) selected from the group con S371 (c)(1) sisting of oligosaccharides, polysaccharides, optionally gly (2), (4) Date: Ul. 31, 2008 cosylated peptides or polypeptides, oligonucleotides, poly s e a v-9 nucleotides, lipids, fatty acids, fatty acid esters, secondary O O metabolites Such as polyketides, terpenes, steroids, shikimic Related U.S. Application Data acids, alkaloids and benzodiazepine, wherein said bioactive (60) Provisional application No. -
<I>Thecaphora Capensis</I>
Persoonia 21, 2008: 147–152 www.persoonia.org RESEARCH ARTICLE doi:10.3767/003158508X387462 Thecaphora capensis sp. nov., an unusual new anther smut on Oxalis in South Africa F. Roets 1, L.L. Dreyer 2, M.J. Wingfield 3, D. Begerow 4 Key words Abstract The smut genus Thecaphora contains plant parasitic microfungi that typically infect very specific plant organs. In this study, we describe a new species of Thecaphora from Oxalis lanata var. rosea (Oxalidaceae) in the anther-smut Cape Floristic Region of South Africa. Molecular phylogenetic reconstructions based on large subunit ribosomal Cape Floristic Region DNA sequence data confirmed the generic placement of the fungus and confirmed that it represents an undescribed Oxalis species for which the name T. capensis sp. nov. is provided. The closest known sister species of the new taxon is phylogeny T. oxalidis that infects the fruits of Oxalis spp. in Europe, Asia and the Americas. In contrast, T. capensis produces Thecaphora teliospores within the anthers of its host. This is the first documented case of an anther-smut from an African spe- cies of Oxalis and the first Thecaphora species described from Africa. Article info Received: 24 August 2008; Accepted: 30 October 2008; Published: 10 November 2008. INTRODUCTION The smut genus Thecaphora resides in the Glomosporiaceae (Goldblatt & Manning 2000) and the largest bulbous genus in (Bauer et al. 2001, Vánky et al. 2008) and includes c. 60 de- the region. The CFR Oxalis spp. flower during the wet winter scribed species. Species of Thecaphora produce sori within months (April to August), and escape the drier summer months various plant organs including seeds, flowers, leaves, stems below ground, only to emerge again at the onset of the next and roots. -
Boletus Edulis and Cistus Ladanifer: Characterization of Its Ectomycorrhizae, in Vitro Synthesis, and Realised Niche
UNIVERSIDAD DE MURCIA ESCUELA INTERNACIONAL DE DOCTORADO Boletus edulis and Cistus ladanifer: characterization of its ectomycorrhizae, in vitro synthesis, and realised niche. Boletus edulis y Cistus ladanifer: caracterización de sus ectomicorrizas, síntesis in vitro y área potencial. Dª. Beatriz Águeda Hernández 2014 UNIVERSIDAD DE MURCIA ESCUELA INTERNACIONAL DE DOCTORADO Boletus edulis AND Cistus ladanifer: CHARACTERIZATION OF ITS ECTOMYCORRHIZAE, in vitro SYNTHESIS, AND REALISED NICHE tesis doctoral BEATRIZ ÁGUEDA HERNÁNDEZ Memoria presentada para la obtención del grado de Doctor por la Universidad de Murcia: Dra. Luz Marina Fernández Toirán Directora, Universidad de Valladolid Dra. Asunción Morte Gómez Tutora, Universidad de Murcia 2014 Dª. Luz Marina Fernández Toirán, Profesora Contratada Doctora de la Universidad de Valladolid, como Directora, y Dª. Asunción Morte Gómez, Profesora Titular de la Universidad de Murcia, como Tutora, AUTORIZAN: La presentación de la Tesis Doctoral titulada: ‘Boletus edulis and Cistus ladanifer: characterization of its ectomycorrhizae, in vitro synthesis, and realised niche’, realizada por Dª Beatriz Águeda Hernández, bajo nuestra inmediata dirección y supervisión, y que presenta para la obtención del grado de Doctor por la Universidad de Murcia. En Murcia, a 31 de julio de 2014 Dra. Luz Marina Fernández Toirán Dra. Asunción Morte Gómez Área de Botánica. Departamento de Biología Vegetal Campus Universitario de Espinardo. 30100 Murcia T. 868 887 007 – www.um.es/web/biologia-vegetal Not everything that can be counted counts, and not everything that counts can be counted. Albert Einstein Le petit prince, alors, ne put contenir son admiration: -Que vous êtes belle! -N´est-ce pas, répondit doucement la fleur. Et je suis née meme temps que le soleil.. -
Septal Pore Caps in Basidiomycetes Composition and Ultrastructure
Septal Pore Caps in Basidiomycetes Composition and Ultrastructure Septal Pore Caps in Basidiomycetes Composition and Ultrastructure Septumporie-kappen in Basidiomyceten Samenstelling en Ultrastructuur (met een samenvatting in het Nederlands) Proefschrift ter verkrijging van de graad van doctor aan de Universiteit Utrecht op gezag van de rector magnificus, prof.dr. J.C. Stoof, ingevolge het besluit van het college voor promoties in het openbaar te verdedigen op maandag 17 december 2007 des middags te 16.15 uur door Kenneth Gregory Anthony van Driel geboren op 31 oktober 1975 te Terneuzen Promotoren: Prof. dr. A.J. Verkleij Prof. dr. H.A.B. Wösten Co-promotoren: Dr. T. Boekhout Dr. W.H. Müller voor mijn ouders Cover design by Danny Nooren. Scanning electron micrographs of septal pore caps of Rhizoctonia solani made by Wally Müller. Printed at Ponsen & Looijen b.v., Wageningen, The Netherlands. ISBN 978-90-6464-191-6 CONTENTS Chapter 1 General Introduction 9 Chapter 2 Septal Pore Complex Morphology in the Agaricomycotina 27 (Basidiomycota) with Emphasis on the Cantharellales and Hymenochaetales Chapter 3 Laser Microdissection of Fungal Septa as Visualized by 63 Scanning Electron Microscopy Chapter 4 Enrichment of Perforate Septal Pore Caps from the 79 Basidiomycetous Fungus Rhizoctonia solani by Combined Use of French Press, Isopycnic Centrifugation, and Triton X-100 Chapter 5 SPC18, a Novel Septal Pore Cap Protein of Rhizoctonia 95 solani Residing in Septal Pore Caps and Pore-plugs Chapter 6 Summary and General Discussion 113 Samenvatting 123 Nawoord 129 List of Publications 131 Curriculum vitae 133 Chapter 1 General Introduction Kenneth G.A. van Driel*, Arend F.